Wall clock time and date at job start Tue Mar 31 2020 16:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47036 * 2 1 4 4 H 1.09001 * 109.47332 * 305.45582 * 3 2 1 5 5 O 1.42898 * 109.47132 * 65.45480 * 3 2 1 6 6 C 1.42896 * 114.00437 * 270.00075 * 5 3 2 7 7 C 1.54263 * 110.03586 * 267.17120 * 6 5 3 8 8 C 1.54894 * 104.19403 * 217.10382 * 7 6 5 9 9 C 1.54888 * 102.75203 * 37.93858 * 8 7 6 10 10 C 1.53876 * 110.03682 * 149.99780 * 6 5 3 11 11 C 1.50704 * 109.47322 * 185.45802 * 3 2 1 12 12 O 1.21280 * 119.99822 * 255.27140 * 11 3 2 13 13 N 1.34773 * 119.99956 * 75.27046 * 11 3 2 14 14 C 1.47019 * 125.64961 * 355.26275 * 13 11 3 15 15 C 1.54325 * 107.27191 * 178.97747 * 14 13 11 16 16 C 1.55160 * 102.94135 * 337.80736 * 15 14 13 17 17 H 1.08995 * 111.03888 * 277.41012 * 16 15 14 18 18 N 1.46500 * 110.99993 * 153.57479 * 16 15 14 19 19 C 1.46497 * 120.00306 * 307.80000 * 18 16 15 20 20 C 1.36943 * 119.99815 * 127.80782 * 18 16 15 21 21 H 1.08004 * 119.99779 * 27.57942 * 20 18 16 22 22 C 1.38807 * 119.99787 * 207.57897 * 20 18 16 23 23 N 1.31617 * 120.00322 * 8.67305 * 22 20 18 24 24 Si 1.86801 * 119.99616 * 188.66556 * 22 20 18 25 25 H 1.48501 * 109.47034 * 90.00475 * 24 22 20 26 26 H 1.48507 * 109.46956 * 210.00176 * 24 22 20 27 27 H 1.48493 * 109.47445 * 329.99917 * 24 22 20 28 28 C 1.47429 * 125.64565 * 175.30882 * 13 11 3 29 29 H 1.08997 * 109.46967 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47147 * 299.99556 * 1 2 3 31 31 H 1.08992 * 109.47340 * 59.99815 * 1 2 3 32 32 H 1.09003 * 109.47147 * 240.00444 * 2 1 3 33 33 H 1.08995 * 109.47816 * 120.00034 * 2 1 3 34 34 H 1.09002 * 110.01448 * 28.60933 * 6 5 3 35 35 H 1.09002 * 110.48503 * 335.77537 * 7 6 5 36 36 H 1.09000 * 110.49150 * 98.42336 * 7 6 5 37 37 H 1.08998 * 110.75359 * 279.61826 * 8 7 6 38 38 H 1.09005 * 110.75514 * 156.25435 * 8 7 6 39 39 H 1.08988 * 110.48679 * 203.37951 * 9 8 7 40 40 H 1.09003 * 110.48278 * 80.72943 * 9 8 7 41 41 H 1.09000 * 110.03550 * 238.57328 * 10 6 5 42 42 H 1.09000 * 110.02659 * 0.02562 * 10 6 5 43 43 H 1.08998 * 109.88233 * 59.56066 * 14 13 11 44 44 H 1.08997 * 110.01479 * 298.47269 * 14 13 11 45 45 H 1.08997 * 110.72164 * 219.44499 * 15 14 13 46 46 H 1.09001 * 110.86993 * 96.24343 * 15 14 13 47 47 H 1.09005 * 109.46722 * 85.81306 * 19 18 16 48 48 H 1.09000 * 109.47086 * 205.81097 * 19 18 16 49 49 H 1.09002 * 109.47109 * 325.81890 * 19 18 16 50 50 H 0.96999 * 120.00246 * 179.97438 * 23 22 20 51 51 H 1.08998 * 110.36691 * 85.25187 * 28 13 11 52 52 H 1.08995 * 110.36583 * 322.92596 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9838 -0.8371 5 8 1.6711 2.0782 1.2255 6 6 0.4015 2.7325 1.1818 7 6 0.5838 4.2147 0.7948 8 6 -0.4731 4.9621 1.6454 9 6 -0.4358 4.1935 2.9896 10 6 -0.2469 2.7191 2.5772 11 6 3.5409 1.4447 -0.1351 12 8 4.2363 1.6803 0.8302 13 7 4.1104 1.1849 -1.3287 14 6 3.3959 0.7890 -2.5510 15 6 4.4505 0.6259 -3.6658 16 6 5.6343 1.4879 -3.1531 17 1 5.4846 2.5406 -3.3930 18 7 6.9078 1.0052 -3.6929 19 6 7.2714 -0.4077 -3.5596 20 6 7.7583 1.8747 -4.3221 21 1 7.7515 2.9222 -4.0589 22 6 8.6291 1.4098 -5.2979 23 7 8.5229 0.1749 -5.7405 24 14 9.9517 2.5371 -5.9831 25 1 11.1867 2.4030 -5.1694 26 1 10.2427 2.1608 -7.3900 27 1 9.4773 3.9433 -5.9349 28 6 5.5533 1.2497 -1.6245 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 -0.2498 2.2356 0.4627 35 1 1.5878 4.5545 1.0491 36 1 0.3892 4.3583 -0.2680 37 1 -1.4591 4.8903 1.1865 38 1 -0.1872 6.0042 1.7882 39 1 -1.3745 4.3216 3.5284 40 1 0.4036 4.5299 3.5982 41 1 -1.2132 2.2164 2.5352 42 1 0.4071 2.2138 3.2878 43 1 2.6796 1.5623 -2.8286 44 1 2.8771 -0.1560 -2.3903 45 1 4.0737 1.0126 -4.6127 46 1 4.7490 -0.4174 -3.7683 47 1 6.8409 -0.9731 -4.3861 48 1 8.3568 -0.5068 -3.5780 49 1 6.8871 -0.7943 -2.6157 50 1 9.1312 -0.1499 -6.4227 51 1 6.0372 0.3093 -1.3609 52 1 6.0139 2.0782 -1.0866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972466939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:43 Heat of formation + Delta-G solvation = -64.688623 kcal Electronic energy + Delta-G solvation = -28970.176709 eV Core-core repulsion = 25163.091533 eV Total energy + Delta-G solvation = -3807.085176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.29065 -39.04878 -37.43619 -36.22737 -34.85040 -33.25716 -31.60800 -29.85021 -29.16974 -28.79937 -27.93878 -26.37907 -26.02020 -23.59138 -22.48439 -21.89435 -20.98441 -20.57001 -19.40289 -19.25753 -17.36361 -17.06205 -16.91151 -15.90409 -15.83429 -15.61233 -15.02497 -14.82470 -14.40835 -14.01602 -13.88765 -13.60872 -13.37574 -13.32866 -12.95671 -12.74768 -12.63363 -12.52318 -12.32163 -12.21893 -12.00428 -11.85005 -11.46176 -11.39384 -11.37460 -11.29031 -11.18625 -10.94721 -10.88115 -10.83202 -10.60323 -10.51015 -10.46227 -10.24997 -9.96644 -9.86624 -9.79053 -9.30704 -8.58996 -8.34427 -6.77671 -5.81841 -3.31365 2.75277 2.85846 3.35319 3.41933 3.42873 3.77992 4.29120 4.31476 4.43635 4.50656 4.65139 4.66266 4.77419 4.93361 4.98563 5.00232 5.16723 5.18895 5.22817 5.27846 5.34382 5.37208 5.39653 5.46496 5.50476 5.56180 5.60547 5.62550 5.67350 5.73207 5.78369 5.79739 5.88785 5.91654 5.96217 5.98950 6.03070 6.07710 6.29242 6.37612 6.52106 6.61489 6.80465 6.86535 7.08211 7.31310 7.63921 7.75644 7.76715 8.34685 8.39098 9.16513 9.77069 10.28054 11.24455 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.002583 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.572986 B =10837.160218 C =11437.197227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.144 4.144 3 C 0.080 3.920 4 H 0.081 0.919 5 O -0.347 6.347 6 C 0.074 3.926 7 C -0.152 4.152 8 C -0.123 4.123 9 C -0.123 4.123 10 C -0.123 4.123 11 C 0.527 3.473 12 O -0.526 6.526 13 N -0.612 5.612 14 C 0.099 3.901 15 C -0.150 4.150 16 C 0.173 3.827 17 H 0.078 0.922 18 N -0.584 5.584 19 C 0.159 3.841 20 C -0.262 4.262 21 H 0.068 0.932 22 C 0.008 3.992 23 N -0.905 5.905 24 Si 0.908 3.092 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.278 1.278 28 C 0.087 3.913 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.022 0.978 48 H 0.056 0.944 49 H -0.003 1.003 50 H 0.254 0.746 51 H 0.068 0.932 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.497 2.372 10.928 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.182 4.182 3 C 0.018 3.982 4 H 0.099 0.901 5 O -0.265 6.265 6 C 0.016 3.984 7 C -0.189 4.189 8 C -0.160 4.160 9 C -0.161 4.161 10 C -0.160 4.160 11 C 0.313 3.687 12 O -0.402 6.402 13 N -0.348 5.348 14 C -0.025 4.025 15 C -0.190 4.190 16 C 0.063 3.937 17 H 0.096 0.904 18 N -0.304 5.304 19 C 0.015 3.985 20 C -0.391 4.391 21 H 0.086 0.914 22 C -0.191 4.191 23 N -0.549 5.549 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.204 1.204 28 C -0.037 4.037 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.040 0.960 48 H 0.075 0.925 49 H 0.016 0.984 50 H 0.064 0.936 51 H 0.086 0.914 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.891 2.411 11.545 23.991 hybrid contribution 0.546 0.418 -0.831 1.079 sum -20.346 2.830 10.714 23.168 Atomic orbital electron populations 1.21935 0.95047 1.02429 1.01983 1.22032 0.96812 0.95400 1.03956 1.21901 0.92615 0.94791 0.88847 0.90134 1.88112 1.35997 1.70577 1.31804 1.23106 0.85102 0.92260 0.97914 1.22960 1.00736 0.95421 0.99819 1.22424 0.98758 0.99183 0.95652 1.22335 1.01767 0.94608 0.97361 1.22213 1.00211 0.97491 0.96119 1.19943 0.89360 0.77484 0.81889 1.90704 1.64199 1.48306 1.36942 1.48431 1.09426 1.67753 1.09161 1.22157 0.95914 0.99131 0.85249 1.23180 0.96234 1.02919 0.96697 1.21435 0.86123 0.97040 0.89152 0.90371 1.43768 1.15112 1.06349 1.65167 1.20793 0.99925 0.83631 0.94158 1.19213 1.14217 0.91456 1.14243 0.91414 1.25138 1.00625 0.96752 0.96627 1.70035 1.38489 1.15579 1.30755 0.86215 0.81841 0.80132 0.78085 1.21341 1.21650 1.20371 1.23012 0.79010 1.02070 0.99648 0.92005 0.91844 0.92566 0.90157 0.90357 0.90915 0.90202 0.91565 0.91477 0.91325 0.91544 0.91260 0.91099 0.90168 0.92002 0.91874 0.90469 0.90389 0.96012 0.92516 0.98440 0.93580 0.91351 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 8.59 37.16 0.32 -0.90 16 2 C -0.14 -1.49 5.56 -26.73 -0.15 -1.64 16 3 C 0.08 1.01 2.06 -27.88 -0.06 0.95 16 4 H 0.08 0.86 7.36 -51.93 -0.38 0.48 16 5 O -0.35 -4.68 9.06 -54.66 -0.50 -5.17 16 6 C 0.07 0.72 2.09 -25.61 -0.05 0.67 16 7 C -0.15 -1.44 6.56 -25.07 -0.16 -1.61 16 8 C -0.12 -0.93 6.91 -24.74 -0.17 -1.10 16 9 C -0.12 -0.94 6.83 -25.07 -0.17 -1.11 16 10 C -0.12 -1.04 6.46 -25.61 -0.17 -1.21 16 11 C 0.53 8.82 7.14 -10.99 -0.08 8.74 16 12 O -0.53 -11.08 16.86 -13.87 -0.23 -11.31 16 13 N -0.61 -9.84 3.33 -170.52 -0.57 -10.40 16 14 C 0.10 1.30 6.10 -3.06 -0.02 1.28 16 15 C -0.15 -2.44 6.50 -24.89 -0.16 -2.60 16 16 C 0.17 3.41 3.55 -65.78 -0.23 3.17 16 17 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 18 N -0.58 -14.09 2.95 -171.03 -0.50 -14.59 16 19 C 0.16 3.78 7.71 59.85 0.46 4.24 16 20 C -0.26 -6.99 9.57 -15.06 -0.14 -7.13 16 21 H 0.07 1.78 7.84 -52.48 -0.41 1.37 16 22 C 0.01 0.21 5.12 -17.43 -0.09 0.12 16 23 N -0.90 -25.59 10.82 55.49 0.60 -24.99 16 24 Si 0.91 21.43 29.56 -169.99 -5.03 16.40 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 C 0.09 1.62 6.48 -2.52 -0.02 1.61 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.49 5.79 -51.93 -0.30 0.19 16 31 H 0.06 0.38 8.03 -51.93 -0.42 -0.04 16 32 H 0.08 0.79 5.85 -51.93 -0.30 0.48 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.60 5.34 -51.93 -0.28 0.32 16 35 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.41 8.14 -51.94 -0.42 -0.01 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.79 7.95 -51.93 -0.41 0.37 16 43 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 44 H 0.06 0.71 6.24 -51.93 -0.32 0.38 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.08 1.35 6.91 -51.93 -0.36 0.99 16 47 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 48 H 0.06 1.48 6.91 -51.93 -0.36 1.12 16 49 H 0.00 -0.06 6.37 -51.93 -0.33 -0.39 16 50 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 51 H 0.07 1.35 6.33 -51.93 -0.33 1.02 16 52 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -31.46 393.20 -10.39 -41.85 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -9.20 Total: -1.18 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.89 Total: 3.48 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.47 Total: -49.99 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.73 Total: -16.48 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.46 -10.39 -41.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972466939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.836 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds