Wall clock time and date at job start Tue Mar 31 2020 16:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47036 * 2 1 4 4 H 1.09001 * 109.47332 * 305.45582 * 3 2 1 5 5 O 1.42898 * 109.47132 * 65.45480 * 3 2 1 6 6 C 1.42896 * 114.00437 * 270.00075 * 5 3 2 7 7 C 1.54263 * 110.03586 * 267.17120 * 6 5 3 8 8 C 1.54894 * 104.19403 * 217.10382 * 7 6 5 9 9 C 1.54888 * 102.75203 * 37.93858 * 8 7 6 10 10 C 1.53876 * 110.03682 * 149.99780 * 6 5 3 11 11 C 1.50704 * 109.47322 * 185.45802 * 3 2 1 12 12 O 1.21280 * 119.99822 * 255.27140 * 11 3 2 13 13 N 1.34773 * 119.99956 * 75.27046 * 11 3 2 14 14 C 1.47019 * 125.64961 * 355.26275 * 13 11 3 15 15 C 1.54325 * 107.27191 * 178.97747 * 14 13 11 16 16 C 1.55160 * 102.94135 * 337.80736 * 15 14 13 17 17 H 1.08995 * 111.03888 * 277.41012 * 16 15 14 18 18 N 1.46500 * 110.99993 * 153.57479 * 16 15 14 19 19 C 1.46497 * 120.00306 * 307.80000 * 18 16 15 20 20 C 1.36943 * 119.99815 * 127.80782 * 18 16 15 21 21 H 1.08004 * 119.99779 * 27.57942 * 20 18 16 22 22 C 1.38807 * 119.99787 * 207.57897 * 20 18 16 23 23 N 1.31617 * 120.00322 * 8.67305 * 22 20 18 24 24 Si 1.86801 * 119.99616 * 188.66556 * 22 20 18 25 25 H 1.48501 * 109.47034 * 90.00475 * 24 22 20 26 26 H 1.48507 * 109.46956 * 210.00176 * 24 22 20 27 27 H 1.48493 * 109.47445 * 329.99917 * 24 22 20 28 28 C 1.47429 * 125.64565 * 175.30882 * 13 11 3 29 29 H 1.08997 * 109.46967 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47147 * 299.99556 * 1 2 3 31 31 H 1.08992 * 109.47340 * 59.99815 * 1 2 3 32 32 H 1.09003 * 109.47147 * 240.00444 * 2 1 3 33 33 H 1.08995 * 109.47816 * 120.00034 * 2 1 3 34 34 H 1.09002 * 110.01448 * 28.60933 * 6 5 3 35 35 H 1.09002 * 110.48503 * 335.77537 * 7 6 5 36 36 H 1.09000 * 110.49150 * 98.42336 * 7 6 5 37 37 H 1.08998 * 110.75359 * 279.61826 * 8 7 6 38 38 H 1.09005 * 110.75514 * 156.25435 * 8 7 6 39 39 H 1.08988 * 110.48679 * 203.37951 * 9 8 7 40 40 H 1.09003 * 110.48278 * 80.72943 * 9 8 7 41 41 H 1.09000 * 110.03550 * 238.57328 * 10 6 5 42 42 H 1.09000 * 110.02659 * 0.02562 * 10 6 5 43 43 H 1.08998 * 109.88233 * 59.56066 * 14 13 11 44 44 H 1.08997 * 110.01479 * 298.47269 * 14 13 11 45 45 H 1.08997 * 110.72164 * 219.44499 * 15 14 13 46 46 H 1.09001 * 110.86993 * 96.24343 * 15 14 13 47 47 H 1.09005 * 109.46722 * 85.81306 * 19 18 16 48 48 H 1.09000 * 109.47086 * 205.81097 * 19 18 16 49 49 H 1.09002 * 109.47109 * 325.81890 * 19 18 16 50 50 H 0.96999 * 120.00246 * 179.97438 * 23 22 20 51 51 H 1.08998 * 110.36691 * 85.25187 * 28 13 11 52 52 H 1.08995 * 110.36583 * 322.92596 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9838 -0.8371 5 8 1.6711 2.0782 1.2255 6 6 0.4015 2.7325 1.1818 7 6 0.5838 4.2147 0.7948 8 6 -0.4731 4.9621 1.6454 9 6 -0.4358 4.1935 2.9896 10 6 -0.2469 2.7191 2.5772 11 6 3.5409 1.4447 -0.1351 12 8 4.2363 1.6803 0.8302 13 7 4.1104 1.1849 -1.3287 14 6 3.3959 0.7890 -2.5510 15 6 4.4505 0.6259 -3.6658 16 6 5.6343 1.4879 -3.1531 17 1 5.4846 2.5406 -3.3930 18 7 6.9078 1.0052 -3.6929 19 6 7.2714 -0.4077 -3.5596 20 6 7.7583 1.8747 -4.3221 21 1 7.7515 2.9222 -4.0589 22 6 8.6291 1.4098 -5.2979 23 7 8.5229 0.1749 -5.7405 24 14 9.9517 2.5371 -5.9831 25 1 11.1867 2.4030 -5.1694 26 1 10.2427 2.1608 -7.3900 27 1 9.4773 3.9433 -5.9349 28 6 5.5533 1.2497 -1.6245 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 -0.2498 2.2356 0.4627 35 1 1.5878 4.5545 1.0491 36 1 0.3892 4.3583 -0.2680 37 1 -1.4591 4.8903 1.1865 38 1 -0.1872 6.0042 1.7882 39 1 -1.3745 4.3216 3.5284 40 1 0.4036 4.5299 3.5982 41 1 -1.2132 2.2164 2.5352 42 1 0.4071 2.2138 3.2878 43 1 2.6796 1.5623 -2.8286 44 1 2.8771 -0.1560 -2.3903 45 1 4.0737 1.0126 -4.6127 46 1 4.7490 -0.4174 -3.7683 47 1 6.8409 -0.9731 -4.3861 48 1 8.3568 -0.5068 -3.5780 49 1 6.8871 -0.7943 -2.6157 50 1 9.1312 -0.1499 -6.4227 51 1 6.0372 0.3093 -1.3609 52 1 6.0139 2.0782 -1.0866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972466939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:42 Heat of formation + Delta-G solvation = -82.004512 kcal Electronic energy + Delta-G solvation = -28970.927582 eV Core-core repulsion = 25163.091533 eV Total energy + Delta-G solvation = -3807.836049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.47231 -40.06117 -38.82900 -37.11788 -36.59374 -34.18069 -33.33034 -31.37481 -30.08942 -29.61185 -29.05669 -28.06348 -27.33062 -25.09764 -23.94966 -22.81197 -21.61656 -21.29809 -20.99745 -20.51844 -18.94652 -18.40680 -17.98682 -17.52014 -16.77421 -16.53855 -16.33371 -16.01906 -15.70897 -15.28187 -14.98312 -14.83432 -14.63924 -14.41666 -14.27651 -14.24982 -13.97249 -13.48542 -13.43361 -13.14957 -13.00045 -12.95780 -12.89947 -12.81867 -12.52253 -12.38496 -12.17476 -12.15046 -12.10461 -12.02655 -11.93888 -11.90560 -11.86178 -11.48748 -11.44581 -11.29828 -10.90017 -10.63875 -10.35048 -9.71324 -8.74416 -7.87846 -5.39128 1.46267 1.47607 1.48652 1.56425 1.67454 2.48828 2.82578 3.26638 3.41089 3.53573 3.63956 3.67935 3.82716 3.87257 3.94560 3.98207 4.04283 4.18485 4.22947 4.31200 4.38634 4.42416 4.49221 4.53040 4.57512 4.63567 4.73842 4.75123 4.77460 4.85368 4.89205 4.94069 4.98480 5.01977 5.08679 5.11110 5.14188 5.19179 5.21738 5.23028 5.29905 5.30499 5.36616 5.40222 5.45893 5.62075 5.68064 6.22548 6.33302 6.50970 7.06986 7.13074 7.81121 8.27417 9.16833 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.002583 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.572986 B =10837.160218 C =11437.197227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.140 4.140 3 C 0.088 3.912 4 H 0.108 0.892 5 O -0.377 6.377 6 C 0.068 3.932 7 C -0.156 4.156 8 C -0.117 4.117 9 C -0.124 4.124 10 C -0.123 4.123 11 C 0.520 3.480 12 O -0.581 6.581 13 N -0.610 5.610 14 C 0.104 3.896 15 C -0.139 4.139 16 C 0.167 3.833 17 H 0.074 0.926 18 N -0.601 5.601 19 C 0.177 3.823 20 C -0.271 4.271 21 H 0.067 0.933 22 C -0.043 4.043 23 N -0.932 5.932 24 Si 0.969 3.031 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.269 1.269 28 C 0.097 3.903 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.067 0.933 47 H 0.007 0.993 48 H 0.025 0.975 49 H 0.020 0.980 50 H 0.250 0.750 51 H 0.055 0.945 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.938 2.748 10.377 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.178 4.178 3 C 0.027 3.973 4 H 0.125 0.875 5 O -0.296 6.296 6 C 0.011 3.989 7 C -0.193 4.193 8 C -0.155 4.155 9 C -0.162 4.162 10 C -0.160 4.160 11 C 0.309 3.691 12 O -0.460 6.460 13 N -0.344 5.344 14 C -0.018 4.018 15 C -0.179 4.179 16 C 0.058 3.942 17 H 0.092 0.908 18 N -0.322 5.322 19 C 0.032 3.968 20 C -0.401 4.401 21 H 0.084 0.916 22 C -0.239 4.239 23 N -0.578 5.578 24 Si 0.797 3.203 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.193 1.193 28 C -0.028 4.028 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.085 0.915 47 H 0.025 0.975 48 H 0.044 0.956 49 H 0.038 0.962 50 H 0.060 0.940 51 H 0.073 0.927 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -24.387 2.797 10.993 26.896 hybrid contribution 1.614 0.331 -0.576 1.745 sum -22.774 3.128 10.417 25.238 Atomic orbital electron populations 1.21924 0.92551 1.03584 1.02891 1.22027 0.98871 0.93424 1.03457 1.21934 0.89071 0.96663 0.89634 0.87465 1.88100 1.38009 1.71115 1.32412 1.23387 0.84062 0.92134 0.99279 1.22982 0.99707 0.95716 1.00944 1.22432 0.99055 0.98896 0.95110 1.22356 1.02125 0.94129 0.97554 1.22261 1.00788 0.98000 0.94989 1.20892 0.91287 0.75976 0.80972 1.90673 1.65824 1.50761 1.38783 1.48475 1.08308 1.67416 1.10236 1.22341 0.95073 1.01922 0.82466 1.23020 0.95338 1.01280 0.98283 1.21530 0.85796 0.97459 0.89393 0.90776 1.43918 1.16842 1.06048 1.65401 1.20498 0.97805 0.83813 0.94635 1.19486 1.14838 0.91791 1.13970 0.91561 1.25833 1.02685 0.98091 0.97301 1.70173 1.39280 1.16976 1.31341 0.85255 0.79184 0.78882 0.77002 1.21551 1.21785 1.19342 1.22638 0.81077 1.00416 0.98673 0.90820 0.91916 0.90611 0.89232 0.92342 0.88505 0.93306 0.90353 0.89426 0.91244 0.89579 0.92887 0.88672 0.92181 0.88567 0.88791 0.89429 0.91453 0.97465 0.95615 0.96168 0.94033 0.92719 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.59 71.98 0.62 -1.12 16 2 C -0.14 -2.51 5.56 30.59 0.17 -2.34 16 3 C 0.09 2.03 2.06 29.85 0.06 2.09 16 4 H 0.11 1.87 7.36 -2.39 -0.02 1.85 16 5 O -0.38 -9.85 9.06 -130.40 -1.18 -11.03 16 6 C 0.07 1.19 2.09 31.32 0.07 1.25 16 7 C -0.16 -2.71 6.56 31.67 0.21 -2.50 16 8 C -0.12 -1.51 6.91 31.89 0.22 -1.29 16 9 C -0.12 -1.70 6.83 31.67 0.22 -1.48 16 10 C -0.12 -1.86 6.46 31.32 0.20 -1.66 16 11 C 0.52 17.15 7.14 87.66 0.63 17.77 16 12 O -0.58 -25.31 16.86 15.55 0.26 -25.05 16 13 N -0.61 -18.88 3.33 -811.80 -2.70 -21.58 16 14 C 0.10 2.37 6.10 86.73 0.53 2.90 16 15 C -0.14 -4.25 6.50 31.78 0.21 -4.05 16 16 C 0.17 6.55 3.55 46.39 0.16 6.71 16 17 H 0.07 2.94 7.96 -2.39 -0.02 2.92 16 18 N -0.60 -29.42 2.95 -695.01 -2.05 -31.47 16 19 C 0.18 8.60 7.71 127.77 0.99 9.59 16 20 C -0.27 -14.66 9.57 84.03 0.80 -13.85 16 21 H 0.07 3.53 7.84 -2.91 -0.02 3.50 16 22 C -0.04 -2.37 5.12 84.86 0.43 -1.94 16 23 N -0.93 -53.73 10.82 21.65 0.23 -53.50 16 24 Si 0.97 44.51 29.56 68.60 2.03 46.54 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 26 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 28 C 0.10 3.69 6.48 86.86 0.56 4.25 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.74 5.79 -2.39 -0.01 0.73 16 31 H 0.07 0.60 8.03 -2.39 -0.02 0.58 16 32 H 0.09 1.42 5.85 -2.39 -0.01 1.40 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 1.20 5.34 -2.39 -0.01 1.19 16 35 H 0.05 1.14 8.08 -2.39 -0.02 1.12 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 1.16 7.95 -2.39 -0.02 1.14 16 43 H 0.10 1.64 7.87 -2.39 -0.02 1.63 16 44 H 0.09 1.67 6.24 -2.39 -0.01 1.65 16 45 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.07 2.22 6.91 -2.39 -0.02 2.21 16 47 H 0.01 0.36 7.57 -2.38 -0.02 0.34 16 48 H 0.02 1.37 6.91 -2.39 -0.02 1.35 16 49 H 0.02 0.86 6.37 -2.39 -0.02 0.85 16 50 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 51 H 0.05 2.21 6.33 -2.39 -0.02 2.20 16 52 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 Total: -1.00 -71.78 393.20 3.55 -68.22 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.88 Total: 13.53 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 6.07 Total: 14.33 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -4.51 Total: -106.55 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.92 Total: -36.08 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -71.78 3.55 -68.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972466939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.782 kcal (2) G-P(sol) polarization free energy of solvation -71.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds