Wall clock time and date at job start Tue Mar 31 2020 14:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47304 * 2 1 4 4 H 1.09001 * 109.48157 * 304.97640 * 3 2 1 5 5 C 1.53284 * 109.46639 * 184.98688 * 3 2 1 6 6 C 1.53182 * 109.06259 * 182.44551 * 5 3 2 7 7 H 1.08990 * 109.54168 * 176.85573 * 6 5 3 8 8 C 1.53005 * 109.54015 * 297.03251 * 6 5 3 9 9 C 1.50699 * 109.46959 * 184.82360 * 8 6 5 10 10 O 1.21282 * 120.00091 * 359.97438 * 9 8 6 11 11 N 1.34780 * 120.00046 * 179.97438 * 9 8 6 12 12 C 1.48208 * 119.97082 * 179.97438 * 11 9 8 13 13 C 1.47140 * 110.34511 * 102.50985 * 12 11 9 14 14 C 1.53240 * 111.81469 * 58.22428 * 13 12 11 15 15 N 1.43464 * 108.26151 * 281.68179 * 14 13 12 16 16 C 1.36942 * 118.94072 * 273.77507 * 15 14 13 17 17 H 1.07994 * 119.99705 * 25.03422 * 16 15 14 18 18 C 1.38807 * 120.00016 * 205.03320 * 16 15 14 19 19 N 1.31621 * 120.00079 * 16.13161 * 18 16 15 20 20 Si 1.86803 * 119.99973 * 196.12955 * 18 16 15 21 21 H 1.48495 * 109.47206 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47017 * 300.00114 * 20 18 16 23 23 H 1.48504 * 109.46820 * 60.00186 * 20 18 16 24 24 C 1.48859 * 122.11904 * 93.50083 * 15 14 13 25 25 C 1.43617 * 119.96868 * 359.97438 * 11 9 8 26 26 C 1.53181 * 109.10901 * 56.93982 * 6 5 3 27 27 C 1.53089 * 109.16299 * 302.97781 * 26 6 5 28 28 O 1.42901 * 109.41843 * 57.60937 * 27 26 6 29 29 H 1.08991 * 109.47219 * 300.00169 * 1 2 3 30 30 H 1.09003 * 109.46807 * 60.00453 * 1 2 3 31 31 H 1.09000 * 109.47138 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47517 * 239.99480 * 2 1 3 33 33 H 1.09007 * 109.47241 * 120.00147 * 2 1 3 34 34 H 1.09003 * 109.64257 * 62.52732 * 5 3 2 35 35 H 1.08999 * 109.50502 * 302.27599 * 5 3 2 36 36 H 1.08993 * 109.47423 * 64.82051 * 8 6 5 37 37 H 1.09008 * 109.46814 * 304.82064 * 8 6 5 38 38 H 1.09003 * 109.32601 * 222.77540 * 12 11 9 39 39 H 1.09001 * 109.32317 * 342.23955 * 12 11 9 40 40 H 1.09002 * 109.00664 * 178.90719 * 13 12 11 41 41 H 1.09004 * 109.00554 * 297.76716 * 13 12 11 42 42 H 1.08994 * 109.49358 * 162.04270 * 14 13 12 43 43 H 1.09001 * 109.73519 * 41.46071 * 14 13 12 44 44 H 0.96997 * 119.99679 * 179.97438 * 19 18 16 45 45 H 1.09008 * 109.47904 * 80.87967 * 24 15 14 46 46 H 1.09003 * 109.47722 * 200.90723 * 24 15 14 47 47 H 1.09002 * 108.86967 * 149.86331 * 25 11 9 48 48 H 1.08998 * 108.79739 * 31.37250 * 25 11 9 49 49 H 1.08994 * 109.51839 * 62.88287 * 26 6 5 50 50 H 1.08995 * 109.52144 * 183.07180 * 26 6 5 51 51 H 1.09001 * 109.48113 * 177.59623 * 27 26 6 52 52 H 1.09000 * 109.48385 * 297.61305 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9816 -0.8420 5 6 3.5677 1.4441 -0.1256 6 6 4.0732 2.8888 -0.0632 7 1 5.1626 2.8955 -0.0957 8 6 3.5207 3.6762 -1.2531 9 6 4.1123 5.0622 -1.2564 10 8 4.8980 5.3883 -0.3919 11 7 3.7682 5.9395 -2.2200 12 6 4.3499 7.3026 -2.2223 13 6 5.4158 7.4023 -3.2317 14 6 4.9021 7.0706 -4.6369 15 7 4.8018 5.6443 -4.7538 16 6 5.9073 4.9312 -5.1343 17 1 6.8948 5.3302 -4.9562 18 6 5.7584 3.6955 -5.7489 19 7 4.5932 3.3469 -6.2521 20 14 7.2118 2.5274 -5.8619 21 1 6.7948 1.2845 -6.5593 22 1 8.3103 3.1761 -6.6219 23 1 7.6857 2.1933 -4.4948 24 6 3.5364 4.9139 -4.4691 25 6 2.8381 5.5525 -3.2436 26 6 3.5955 3.5312 1.2427 27 6 2.0685 3.4483 1.3143 28 8 1.6620 2.0815 1.2210 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8576 0.9975 -1.0768 35 1 4.0009 0.8709 0.6940 36 1 2.4360 3.7443 -1.1716 37 1 3.7842 3.1665 -2.1799 38 1 3.5686 8.0279 -2.4500 39 1 4.7640 7.5197 -1.2377 40 1 5.8143 8.4168 -3.2283 41 1 6.2145 6.7066 -2.9744 42 1 5.6022 7.4530 -5.3797 43 1 3.9216 7.5225 -4.7865 44 1 4.4894 2.4836 -6.6819 45 1 2.8781 4.9756 -5.3357 46 1 3.7601 3.8685 -4.2561 47 1 2.2876 6.4343 -3.5714 48 1 2.1342 4.8333 -2.8250 49 1 4.0292 3.0001 2.0899 50 1 3.9052 4.5759 1.2693 51 1 1.7258 3.8657 2.2611 52 1 1.6346 4.0138 0.4896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989434138.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:21 Heat of formation + Delta-G solvation = -70.714537 kcal Electronic energy + Delta-G solvation = -30480.649616 eV Core-core repulsion = 26673.303137 eV Total energy + Delta-G solvation = -3807.346479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.39068 -39.15090 -37.03716 -34.53929 -34.15453 -33.95251 -32.77814 -30.91009 -29.79793 -28.55087 -27.42604 -25.50133 -24.64780 -23.68925 -23.55828 -21.99974 -21.36670 -19.78878 -19.29379 -18.03612 -17.08733 -16.40094 -16.36411 -16.02276 -15.87794 -15.33241 -14.84145 -14.45633 -14.12612 -13.93670 -13.86584 -13.67745 -13.55711 -13.24585 -13.17287 -12.84568 -12.67350 -12.41303 -12.16180 -11.85753 -11.70784 -11.64451 -11.45233 -11.25913 -11.12696 -11.09953 -10.98190 -10.89823 -10.77025 -10.58590 -10.41313 -10.27832 -10.18804 -10.05431 -9.86238 -9.73124 -9.30838 -9.08929 -8.50436 -8.02952 -6.73367 -5.83498 -3.24346 3.11845 3.35188 3.40674 3.43965 3.55911 3.80867 4.47352 4.63018 4.80312 4.90494 5.00000 5.02767 5.11052 5.22896 5.24977 5.31600 5.33718 5.36699 5.44459 5.54330 5.58741 5.65072 5.70615 5.71682 5.78671 5.82001 5.89610 5.91825 5.92525 5.98874 6.03022 6.07440 6.11352 6.16232 6.26721 6.27668 6.35911 6.38777 6.44627 6.45517 6.53710 6.80867 6.91760 7.03313 7.29760 7.33782 7.43867 7.77230 7.99557 8.40338 8.70331 9.17113 9.84940 10.30284 11.24723 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.004730 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.363795 B = 5918.214973 C = 7173.065517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.089 3.911 4 H 0.060 0.940 5 C -0.146 4.146 6 C -0.071 4.071 7 H 0.082 0.918 8 C -0.141 4.141 9 C 0.523 3.477 10 O -0.556 6.556 11 N -0.585 5.585 12 C 0.130 3.870 13 C -0.170 4.170 14 C 0.163 3.837 15 N -0.590 5.590 16 C -0.253 4.253 17 H 0.063 0.937 18 C 0.006 3.994 19 N -0.908 5.908 20 Si 0.896 3.104 21 H -0.290 1.290 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.165 3.835 25 C 0.080 3.920 26 C -0.153 4.153 27 C 0.061 3.939 28 O -0.381 6.381 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.033 0.967 44 H 0.254 0.746 45 H 0.042 0.958 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.092 0.908 51 H 0.088 0.912 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 -0.511 11.269 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.031 3.969 4 H 0.078 0.922 5 C -0.184 4.184 6 C -0.090 4.090 7 H 0.100 0.900 8 C -0.180 4.180 9 C 0.312 3.688 10 O -0.436 6.436 11 N -0.316 5.316 12 C 0.008 3.992 13 C -0.211 4.211 14 C 0.035 3.965 15 N -0.311 5.311 16 C -0.382 4.382 17 H 0.081 0.919 18 C -0.192 4.192 19 N -0.553 5.553 20 Si 0.726 3.274 21 H -0.216 1.216 22 H -0.209 1.209 23 H -0.211 1.211 24 C 0.039 3.961 25 C -0.046 4.046 26 C -0.191 4.191 27 C -0.016 4.016 28 O -0.300 6.300 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.111 0.889 51 H 0.106 0.894 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.112 -0.571 11.743 14.284 hybrid contribution 1.004 -0.519 -0.562 1.262 sum -7.108 -1.090 11.180 13.293 Atomic orbital electron populations 1.21715 0.95426 1.01290 1.02237 1.21553 0.96562 0.94644 1.02630 1.22201 0.93761 0.93772 0.87170 0.92226 1.22302 0.96081 0.97000 1.02987 1.20898 1.01334 0.93217 0.93557 0.89971 1.21877 1.01144 0.93873 1.01127 1.20448 0.81146 0.86491 0.80745 1.90576 1.35772 1.78784 1.38461 1.47402 1.44851 1.13219 1.26162 1.20519 0.96150 0.82257 1.00275 1.21783 0.99469 1.00466 0.99360 1.20167 0.97575 0.85915 0.92889 1.43610 1.09223 1.00190 1.78099 1.19127 0.86406 1.00711 1.31995 0.91911 1.24922 0.96661 0.99758 0.97892 1.70012 1.23255 1.21813 1.40182 0.86460 0.82473 0.80677 0.77779 1.21580 1.20900 1.21088 1.21888 0.86796 0.96202 0.91248 1.22185 0.91564 0.99967 0.90899 1.22298 0.95728 1.03592 0.97476 1.22594 0.94645 0.82885 1.01453 1.87873 1.78656 1.24783 1.38686 0.92086 0.92849 0.92997 0.90575 0.91350 0.90583 0.91010 0.89614 0.88071 0.92323 0.90590 0.92708 0.91357 0.93693 0.94908 0.93633 0.94007 0.90788 0.92120 0.91771 0.91612 0.88917 0.89359 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.81 37.15 0.36 -1.08 16 2 C -0.12 -1.21 5.64 -26.73 -0.15 -1.36 16 3 C 0.09 1.06 2.37 -26.58 -0.06 1.00 16 4 H 0.06 0.72 6.71 -51.93 -0.35 0.38 16 5 C -0.15 -1.84 4.94 -26.49 -0.13 -1.97 16 6 C -0.07 -1.03 2.33 -90.43 -0.21 -1.24 16 7 H 0.08 1.35 7.96 -51.93 -0.41 0.94 16 8 C -0.14 -2.16 3.16 -27.88 -0.09 -2.25 16 9 C 0.52 9.44 7.37 -10.98 -0.08 9.36 16 10 O -0.56 -11.27 13.43 5.56 0.07 -11.19 16 11 N -0.59 -10.21 2.46 -176.69 -0.43 -10.65 16 12 C 0.13 2.13 5.69 -5.92 -0.03 2.10 16 13 C -0.17 -3.04 5.63 -29.42 -0.17 -3.20 16 14 C 0.16 3.24 5.59 -5.52 -0.03 3.21 16 15 N -0.59 -13.83 2.55 -172.38 -0.44 -14.27 16 16 C -0.25 -6.72 9.26 -15.06 -0.14 -6.86 16 17 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 18 C 0.01 0.15 4.90 -17.43 -0.09 0.07 16 19 N -0.91 -24.95 11.02 55.49 0.61 -24.34 16 20 Si 0.90 21.50 29.58 -169.99 -5.03 16.47 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.16 3.54 5.18 -1.78 -0.01 3.53 16 25 C 0.08 1.33 5.05 -4.61 -0.02 1.31 16 26 C -0.15 -2.08 5.40 -26.59 -0.14 -2.22 16 27 C 0.06 0.74 6.57 37.20 0.24 0.99 16 28 O -0.38 -4.94 9.94 -35.23 -0.35 -5.29 16 29 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.16 4.25 -51.93 -0.22 0.94 16 37 H 0.10 1.72 7.32 -51.92 -0.38 1.34 16 38 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 39 H 0.08 1.28 7.12 -51.93 -0.37 0.91 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.46 7.91 -51.93 -0.41 1.05 16 42 H 0.04 0.92 8.02 -51.93 -0.42 0.51 16 43 H 0.03 0.60 7.58 -51.93 -0.39 0.20 16 44 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 45 H 0.04 0.97 8.00 -51.92 -0.42 0.55 16 46 H 0.07 1.77 5.79 -51.93 -0.30 1.47 16 47 H 0.06 0.93 7.73 -51.93 -0.40 0.52 16 48 H 0.06 0.93 6.37 -51.93 -0.33 0.60 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.09 1.42 5.93 -51.93 -0.31 1.11 16 51 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 52 H 0.05 0.57 6.49 -51.93 -0.34 0.23 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -29.56 381.74 -9.79 -39.35 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -9.22 Total: 2.79 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -0.75 Total: 1.38 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.26 Total: -49.26 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.28 Total: -16.48 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.56 -9.79 -39.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989434138.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.368 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds