Wall clock time and date at job start Tue Mar 31 2020 14:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47304 * 2 1 4 4 H 1.09001 * 109.48157 * 304.97640 * 3 2 1 5 5 C 1.53284 * 109.46639 * 184.98688 * 3 2 1 6 6 C 1.53182 * 109.06259 * 182.44551 * 5 3 2 7 7 H 1.08990 * 109.54168 * 176.85573 * 6 5 3 8 8 C 1.53005 * 109.54015 * 297.03251 * 6 5 3 9 9 C 1.50699 * 109.46959 * 184.82360 * 8 6 5 10 10 O 1.21282 * 120.00091 * 359.97438 * 9 8 6 11 11 N 1.34780 * 120.00046 * 179.97438 * 9 8 6 12 12 C 1.48208 * 119.97082 * 179.97438 * 11 9 8 13 13 C 1.47140 * 110.34511 * 102.50985 * 12 11 9 14 14 C 1.53240 * 111.81469 * 58.22428 * 13 12 11 15 15 N 1.43464 * 108.26151 * 281.68179 * 14 13 12 16 16 C 1.36942 * 118.94072 * 273.77507 * 15 14 13 17 17 H 1.07994 * 119.99705 * 25.03422 * 16 15 14 18 18 C 1.38807 * 120.00016 * 205.03320 * 16 15 14 19 19 N 1.31621 * 120.00079 * 16.13161 * 18 16 15 20 20 Si 1.86803 * 119.99973 * 196.12955 * 18 16 15 21 21 H 1.48495 * 109.47206 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47017 * 300.00114 * 20 18 16 23 23 H 1.48504 * 109.46820 * 60.00186 * 20 18 16 24 24 C 1.48859 * 122.11904 * 93.50083 * 15 14 13 25 25 C 1.43617 * 119.96868 * 359.97438 * 11 9 8 26 26 C 1.53181 * 109.10901 * 56.93982 * 6 5 3 27 27 C 1.53089 * 109.16299 * 302.97781 * 26 6 5 28 28 O 1.42901 * 109.41843 * 57.60937 * 27 26 6 29 29 H 1.08991 * 109.47219 * 300.00169 * 1 2 3 30 30 H 1.09003 * 109.46807 * 60.00453 * 1 2 3 31 31 H 1.09000 * 109.47138 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47517 * 239.99480 * 2 1 3 33 33 H 1.09007 * 109.47241 * 120.00147 * 2 1 3 34 34 H 1.09003 * 109.64257 * 62.52732 * 5 3 2 35 35 H 1.08999 * 109.50502 * 302.27599 * 5 3 2 36 36 H 1.08993 * 109.47423 * 64.82051 * 8 6 5 37 37 H 1.09008 * 109.46814 * 304.82064 * 8 6 5 38 38 H 1.09003 * 109.32601 * 222.77540 * 12 11 9 39 39 H 1.09001 * 109.32317 * 342.23955 * 12 11 9 40 40 H 1.09002 * 109.00664 * 178.90719 * 13 12 11 41 41 H 1.09004 * 109.00554 * 297.76716 * 13 12 11 42 42 H 1.08994 * 109.49358 * 162.04270 * 14 13 12 43 43 H 1.09001 * 109.73519 * 41.46071 * 14 13 12 44 44 H 0.96997 * 119.99679 * 179.97438 * 19 18 16 45 45 H 1.09008 * 109.47904 * 80.87967 * 24 15 14 46 46 H 1.09003 * 109.47722 * 200.90723 * 24 15 14 47 47 H 1.09002 * 108.86967 * 149.86331 * 25 11 9 48 48 H 1.08998 * 108.79739 * 31.37250 * 25 11 9 49 49 H 1.08994 * 109.51839 * 62.88287 * 26 6 5 50 50 H 1.08995 * 109.52144 * 183.07180 * 26 6 5 51 51 H 1.09001 * 109.48113 * 177.59623 * 27 26 6 52 52 H 1.09000 * 109.48385 * 297.61305 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9816 -0.8420 5 6 3.5677 1.4441 -0.1256 6 6 4.0732 2.8888 -0.0632 7 1 5.1626 2.8955 -0.0957 8 6 3.5207 3.6762 -1.2531 9 6 4.1123 5.0622 -1.2564 10 8 4.8980 5.3883 -0.3919 11 7 3.7682 5.9395 -2.2200 12 6 4.3499 7.3026 -2.2223 13 6 5.4158 7.4023 -3.2317 14 6 4.9021 7.0706 -4.6369 15 7 4.8018 5.6443 -4.7538 16 6 5.9073 4.9312 -5.1343 17 1 6.8948 5.3302 -4.9562 18 6 5.7584 3.6955 -5.7489 19 7 4.5932 3.3469 -6.2521 20 14 7.2118 2.5274 -5.8619 21 1 6.7948 1.2845 -6.5593 22 1 8.3103 3.1761 -6.6219 23 1 7.6857 2.1933 -4.4948 24 6 3.5364 4.9139 -4.4691 25 6 2.8381 5.5525 -3.2436 26 6 3.5955 3.5312 1.2427 27 6 2.0685 3.4483 1.3143 28 8 1.6620 2.0815 1.2210 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8576 0.9975 -1.0768 35 1 4.0009 0.8709 0.6940 36 1 2.4360 3.7443 -1.1716 37 1 3.7842 3.1665 -2.1799 38 1 3.5686 8.0279 -2.4500 39 1 4.7640 7.5197 -1.2377 40 1 5.8143 8.4168 -3.2283 41 1 6.2145 6.7066 -2.9744 42 1 5.6022 7.4530 -5.3797 43 1 3.9216 7.5225 -4.7865 44 1 4.4894 2.4836 -6.6819 45 1 2.8781 4.9756 -5.3357 46 1 3.7601 3.8685 -4.2561 47 1 2.2876 6.4343 -3.5714 48 1 2.1342 4.8333 -2.8250 49 1 4.0292 3.0001 2.0899 50 1 3.9052 4.5759 1.2693 51 1 1.7258 3.8657 2.2611 52 1 1.6346 4.0138 0.4896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989434138.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:18 Heat of formation + Delta-G solvation = -86.318036 kcal Electronic energy + Delta-G solvation = -30481.326235 eV Core-core repulsion = 26673.303137 eV Total energy + Delta-G solvation = -3808.023098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -41.65299 -40.36260 -38.58687 -36.00226 -35.52751 -34.84521 -34.33233 -32.74795 -30.74085 -29.86312 -29.02154 -27.05082 -25.75480 -25.42162 -24.55422 -23.43703 -22.25014 -21.49084 -20.51978 -19.39494 -18.75498 -17.88872 -17.42490 -17.34266 -17.15701 -16.67171 -16.44613 -15.74689 -15.64549 -15.47390 -15.03587 -14.97830 -14.61663 -14.53735 -14.41474 -14.15694 -13.93852 -13.81537 -13.56670 -13.38453 -13.14317 -12.86076 -12.70189 -12.64098 -12.51902 -12.38845 -12.35617 -12.21490 -12.09253 -12.03794 -11.77715 -11.72077 -11.66102 -11.46001 -11.41300 -11.06029 -10.66876 -10.48419 -10.21429 -9.49225 -8.64750 -7.86805 -5.28636 1.40462 1.43228 1.49018 1.68837 2.21917 2.49479 2.87166 3.25995 3.53483 3.64991 3.72757 3.79748 3.91745 3.99898 4.12245 4.17887 4.22030 4.25302 4.26936 4.34080 4.42397 4.47868 4.51757 4.59414 4.61120 4.64662 4.72517 4.73536 4.76349 4.84494 4.91945 4.94283 4.99177 5.05539 5.12264 5.16072 5.17880 5.21060 5.25186 5.29029 5.33066 5.35411 5.48610 5.49692 5.60332 5.71422 5.83975 6.33242 6.39431 6.58396 7.18246 7.29251 7.95913 8.33359 9.17564 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.004730 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.363795 B = 5918.214973 C = 7173.065517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.089 3.911 4 H 0.060 0.940 5 C -0.141 4.141 6 C -0.071 4.071 7 H 0.053 0.947 8 C -0.130 4.130 9 C 0.514 3.486 10 O -0.582 6.582 11 N -0.588 5.588 12 C 0.127 3.873 13 C -0.154 4.154 14 C 0.159 3.841 15 N -0.604 5.604 16 C -0.261 4.261 17 H 0.049 0.951 18 C -0.035 4.035 19 N -0.926 5.926 20 Si 0.945 3.055 21 H -0.287 1.287 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.171 3.829 25 C 0.091 3.909 26 C -0.146 4.146 27 C 0.063 3.937 28 O -0.386 6.386 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.025 0.975 42 H 0.033 0.967 43 H 0.058 0.942 44 H 0.250 0.750 45 H 0.023 0.977 46 H 0.043 0.957 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.067 0.933 50 H 0.075 0.925 51 H 0.106 0.894 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 -0.058 12.075 15.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.031 3.969 4 H 0.078 0.922 5 C -0.179 4.179 6 C -0.090 4.090 7 H 0.072 0.928 8 C -0.170 4.170 9 C 0.304 3.696 10 O -0.464 6.464 11 N -0.318 5.318 12 C 0.005 3.995 13 C -0.195 4.195 14 C 0.032 3.968 15 N -0.327 5.327 16 C -0.392 4.392 17 H 0.067 0.933 18 C -0.231 4.231 19 N -0.572 5.572 20 Si 0.774 3.226 21 H -0.213 1.213 22 H -0.207 1.207 23 H -0.216 1.216 24 C 0.045 3.955 25 C -0.035 4.035 26 C -0.184 4.184 27 C -0.013 4.013 28 O -0.306 6.306 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.043 0.957 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.041 0.959 46 H 0.062 0.938 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.086 0.914 50 H 0.094 0.906 51 H 0.124 0.876 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.772 -0.091 12.549 15.905 hybrid contribution 1.581 -0.594 -0.826 1.880 sum -8.191 -0.685 11.722 14.317 Atomic orbital electron populations 1.21691 0.94738 1.02066 1.01911 1.21573 0.97143 0.93527 1.03092 1.22262 0.92896 0.94798 0.86934 0.92207 1.22265 0.96925 0.95574 1.03094 1.20866 0.99673 0.94567 0.93924 0.92798 1.21812 1.02373 0.92257 1.00547 1.20917 0.80804 0.87321 0.80543 1.90564 1.36831 1.79390 1.39575 1.47541 1.44824 1.13615 1.25845 1.20640 0.96763 0.82566 0.99494 1.21591 0.98683 1.00960 0.98297 1.20317 0.98698 0.84145 0.93659 1.43844 1.08950 1.01612 1.78273 1.19260 0.87090 1.01315 1.31486 0.93340 1.25417 0.98514 1.00826 0.98339 1.70118 1.24292 1.21803 1.40960 0.85688 0.80392 0.79232 0.77240 1.21305 1.20677 1.21646 1.21716 0.85949 0.95052 0.92744 1.22025 0.91082 1.01500 0.88845 1.22196 0.97052 1.02287 0.96824 1.22635 0.93255 0.82803 1.02635 1.87881 1.78560 1.25070 1.39071 0.92753 0.92780 0.91733 0.89826 0.91213 0.90775 0.90558 0.87290 0.89860 0.88646 0.90961 0.89727 0.95656 0.94881 0.92379 0.94030 0.95908 0.93841 0.89383 0.89182 0.91381 0.90646 0.87573 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.81 71.98 0.71 -1.83 16 2 C -0.12 -2.20 5.64 30.59 0.17 -2.02 16 3 C 0.09 1.98 2.37 30.69 0.07 2.05 16 4 H 0.06 1.34 6.71 -2.39 -0.02 1.32 16 5 C -0.14 -3.46 4.94 30.75 0.15 -3.31 16 6 C -0.07 -2.06 2.33 -10.67 -0.02 -2.09 16 7 H 0.05 1.84 7.96 -2.39 -0.02 1.82 16 8 C -0.13 -3.95 3.16 29.85 0.09 -3.85 16 9 C 0.51 18.30 7.37 87.66 0.65 18.95 16 10 O -0.58 -23.70 13.43 -3.04 -0.04 -23.74 16 11 N -0.59 -19.53 2.46 -831.32 -2.04 -21.57 16 12 C 0.13 3.86 5.69 84.23 0.48 4.34 16 13 C -0.15 -5.32 5.63 28.85 0.16 -5.16 16 14 C 0.16 6.14 5.59 87.02 0.49 6.63 16 15 N -0.60 -28.40 2.55 -699.28 -1.78 -30.18 16 16 C -0.26 -14.15 9.26 84.03 0.78 -13.37 16 17 H 0.05 2.71 7.88 -2.91 -0.02 2.69 16 18 C -0.03 -1.90 4.90 84.86 0.42 -1.49 16 19 N -0.93 -51.65 11.02 21.65 0.24 -51.42 16 20 Si 0.95 44.97 29.58 68.60 2.03 47.00 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 C 0.17 7.30 5.18 86.55 0.45 7.75 16 25 C 0.09 2.82 5.05 87.53 0.44 3.27 16 26 C -0.15 -3.85 5.40 30.68 0.17 -3.68 16 27 C 0.06 1.41 6.57 72.01 0.47 1.89 16 28 O -0.39 -9.23 9.94 -148.98 -1.48 -10.71 16 29 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.30 8.14 -2.38 -0.02 1.29 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.11 2.74 4.25 -2.39 -0.01 2.73 16 37 H 0.08 2.86 7.32 -2.38 -0.02 2.84 16 38 H 0.10 2.27 8.06 -2.39 -0.02 2.25 16 39 H 0.07 2.30 7.12 -2.39 -0.02 2.29 16 40 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.02 1.08 7.91 -2.38 -0.02 1.06 16 42 H 0.03 1.34 8.02 -2.39 -0.02 1.32 16 43 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16 44 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 45 H 0.02 1.06 8.00 -2.38 -0.02 1.04 16 46 H 0.04 2.11 5.79 -2.39 -0.01 2.09 16 47 H 0.09 2.32 7.73 -2.39 -0.02 2.31 16 48 H 0.09 2.36 6.37 -2.39 -0.02 2.35 16 49 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.08 2.28 5.93 -2.39 -0.01 2.27 16 51 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 52 H 0.05 1.10 6.49 -2.39 -0.02 1.08 16 Total: -1.00 -64.90 381.74 3.47 -61.43 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.88 Total: 21.12 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.67 Total: 8.07 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -3.59 Total: -103.17 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.52 Total: -34.45 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.90 3.47 -61.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989434138.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.890 kcal (2) G-P(sol) polarization free energy of solvation -64.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds