Wall clock time and date at job start Tue Mar 31 2020 15:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46807 * 2 1 4 4 H 1.08998 * 109.47026 * 304.99864 * 3 2 1 5 5 O 1.42898 * 109.47129 * 65.00375 * 3 2 1 6 6 C 1.42905 * 113.99615 * 269.99836 * 5 3 2 7 7 C 1.54266 * 110.03129 * 267.16510 * 6 5 3 8 8 C 1.54886 * 104.19636 * 217.10931 * 7 6 5 9 9 C 1.54881 * 102.75204 * 37.94063 * 8 7 6 10 10 C 1.53873 * 110.03082 * 150.00063 * 6 5 3 11 11 C 1.50698 * 109.46730 * 185.00035 * 3 2 1 12 12 O 1.21286 * 119.99968 * 244.99806 * 11 3 2 13 13 N 1.34777 * 120.00214 * 65.00272 * 11 3 2 14 14 C 1.46925 * 120.62958 * 359.71986 * 13 11 3 15 15 C 1.53619 * 108.54801 * 126.36996 * 14 13 11 16 16 C 1.53045 * 109.24343 * 54.85232 * 15 14 13 17 17 N 1.46493 * 109.44962 * 178.49898 * 16 15 14 18 18 C 1.36932 * 120.00250 * 275.06049 * 17 16 15 19 19 H 1.07998 * 119.99965 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00340 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99619 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00263 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46870 * 60.00729 * 22 20 18 24 24 H 1.48500 * 109.46945 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47092 * 300.00510 * 22 20 18 26 26 C 1.53044 * 109.53579 * 298.51560 * 16 15 14 27 27 C 1.46925 * 120.63227 * 179.97438 * 13 11 3 28 28 H 1.08998 * 109.46712 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46806 * 300.00180 * 1 2 3 30 30 H 1.08996 * 109.47227 * 60.00062 * 1 2 3 31 31 H 1.09000 * 109.47066 * 240.00539 * 2 1 3 32 32 H 1.08996 * 109.47227 * 119.99938 * 2 1 3 33 33 H 1.09000 * 110.01842 * 28.60855 * 6 5 3 34 34 H 1.08998 * 110.48638 * 335.78856 * 7 6 5 35 35 H 1.09001 * 110.48707 * 98.42943 * 7 6 5 36 36 H 1.09004 * 110.75377 * 279.62714 * 8 7 6 37 37 H 1.09002 * 110.75623 * 156.26319 * 8 7 6 38 38 H 1.09000 * 110.48953 * 203.37904 * 9 8 7 39 39 H 1.09000 * 110.59588 * 80.79038 * 9 8 7 40 40 H 1.08996 * 110.02961 * 238.56738 * 10 6 5 41 41 H 1.09003 * 110.03151 * 359.95149 * 10 6 5 42 42 H 1.09007 * 109.58441 * 246.20270 * 14 13 11 43 43 H 1.09000 * 109.59014 * 6.62188 * 14 13 11 44 44 H 1.09005 * 109.63370 * 294.86301 * 15 14 13 45 45 H 1.09000 * 109.43249 * 174.72432 * 15 14 13 46 46 H 1.08997 * 109.45506 * 58.53136 * 16 15 14 47 47 H 0.97002 * 119.99910 * 95.06360 * 17 16 15 48 48 H 0.97004 * 119.99977 * 179.97438 * 21 20 18 49 49 H 1.08993 * 109.49863 * 301.41071 * 26 16 15 50 50 H 1.09007 * 109.52212 * 181.32928 * 26 16 15 51 51 H 1.08997 * 109.58825 * 353.37292 * 27 13 11 52 52 H 1.09008 * 109.58412 * 113.65513 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0814 1.2211 6 6 0.3927 2.7356 1.1660 7 6 0.5780 4.2168 0.7766 8 6 -0.4851 4.9664 1.6172 9 6 -0.4581 4.2014 2.9636 10 6 -0.2661 2.7258 2.5565 11 6 3.5419 1.4444 -0.1238 12 8 4.2250 1.8612 0.7875 13 7 4.1260 0.9829 -1.2474 14 6 3.3121 0.4692 -2.3575 15 6 3.7150 1.2091 -3.6420 16 6 5.2245 1.0690 -3.8525 17 7 5.6083 1.7427 -5.0954 18 6 5.5115 1.0816 -6.2906 19 1 5.1517 0.0637 -6.3171 20 6 5.8747 1.7202 -7.4685 21 7 6.3127 2.9610 -7.4362 22 14 5.7432 0.8181 -9.0989 23 1 4.3326 0.4156 -9.3295 24 1 6.1889 1.7130 -10.1970 25 1 6.6042 -0.3914 -9.0663 26 6 5.9666 1.7075 -2.6762 27 6 5.5890 0.9787 -1.3831 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 -0.2531 2.2368 0.4434 34 1 1.5801 4.5572 1.0374 35 1 0.3914 4.3576 -0.2880 36 1 -1.4678 4.8934 1.1511 37 1 -0.2004 6.0090 1.7593 38 1 -1.4009 4.3310 3.4951 39 1 0.3755 4.5388 3.5796 40 1 -1.2320 2.2230 2.5085 41 1 0.3820 2.2213 3.2732 42 1 3.4900 -0.5996 -2.4770 43 1 2.2568 0.6448 -2.1487 44 1 3.4565 2.2644 -3.5533 45 1 3.1874 0.7750 -4.4913 46 1 5.4856 0.0127 -3.9163 47 1 5.9311 2.6571 -5.0717 48 1 6.5668 3.4071 -8.2592 49 1 5.6869 2.7579 -2.5965 50 1 7.0418 1.6285 -2.8377 51 1 6.0364 1.4907 -0.5312 52 1 5.9494 -0.0493 -1.4221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997058945.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:18 Heat of formation + Delta-G solvation = -82.405032 kcal Electronic energy + Delta-G solvation = -29046.036490 eV Core-core repulsion = 25238.183073 eV Total energy + Delta-G solvation = -3807.853417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 3.94 seconds Orbital eigenvalues (eV) -40.53299 -39.10189 -37.36571 -36.32273 -34.61877 -33.33911 -31.95150 -30.85326 -29.43223 -29.02937 -28.55447 -26.71099 -24.76836 -23.16507 -22.71864 -21.95149 -20.97844 -20.58403 -20.35716 -19.05398 -17.51087 -17.12160 -16.98603 -15.93945 -15.79479 -15.57360 -14.87315 -14.83040 -14.42003 -14.08162 -14.04608 -13.71355 -13.60002 -13.53665 -13.39169 -13.08639 -12.79303 -12.56875 -12.34839 -12.19220 -12.00565 -11.93046 -11.66088 -11.42950 -11.39205 -11.29276 -11.16016 -11.00071 -10.90013 -10.87351 -10.82408 -10.60324 -10.49113 -10.29065 -9.87466 -9.78980 -9.69288 -9.35437 -8.93548 -8.50151 -7.01388 -5.80569 -3.10049 2.66465 2.77706 3.40248 3.44910 3.46170 3.69130 4.28469 4.31593 4.42936 4.54534 4.61490 4.65565 4.72869 4.92687 4.99228 5.04055 5.15431 5.19669 5.23330 5.28248 5.32445 5.37396 5.38607 5.41464 5.47757 5.50333 5.54977 5.59920 5.63228 5.68517 5.70705 5.74940 5.77899 5.90036 5.91866 5.94433 5.96567 5.99911 6.09069 6.20116 6.33230 6.36769 6.48171 6.58834 6.85743 6.99613 7.05335 7.49880 7.64472 8.26338 8.37610 9.48706 10.06249 10.40865 11.41875 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.002647 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.118624 B =10577.374957 C =10805.060270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.150 4.150 3 C 0.075 3.925 4 H 0.085 0.915 5 O -0.346 6.346 6 C 0.074 3.926 7 C -0.152 4.152 8 C -0.123 4.123 9 C -0.123 4.123 10 C -0.122 4.122 11 C 0.516 3.484 12 O -0.529 6.529 13 N -0.604 5.604 14 C 0.101 3.899 15 C -0.151 4.151 16 C 0.179 3.821 17 N -0.724 5.724 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.139 4.139 27 C 0.117 3.883 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.048 0.952 47 H 0.384 0.616 48 H 0.256 0.744 49 H 0.063 0.937 50 H 0.077 0.923 51 H 0.088 0.912 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.170 -2.905 18.555 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.188 4.188 3 C 0.014 3.986 4 H 0.103 0.897 5 O -0.264 6.264 6 C 0.016 3.984 7 C -0.190 4.190 8 C -0.160 4.160 9 C -0.160 4.160 10 C -0.160 4.160 11 C 0.303 3.697 12 O -0.404 6.404 13 N -0.339 5.339 14 C -0.022 4.022 15 C -0.193 4.193 16 C 0.069 3.931 17 N -0.364 5.364 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.178 4.178 27 C -0.005 4.005 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.066 0.934 47 H 0.217 0.783 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.106 0.894 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.681 -2.789 19.053 24.214 hybrid contribution -0.167 -0.125 -1.415 1.431 sum -14.849 -2.914 17.637 23.239 Atomic orbital electron populations 1.21946 0.95018 1.02495 1.02108 1.22206 0.97036 0.95385 1.04167 1.21924 0.92718 0.94780 0.89202 0.89731 1.88099 1.36112 1.70485 1.31743 1.23111 0.84995 0.92340 0.97916 1.22958 1.00697 0.95340 0.99961 1.22421 0.98776 0.99203 0.95621 1.22331 1.01744 0.94595 0.97379 1.22209 1.00127 0.97496 0.96150 1.20303 0.89599 0.77664 0.82148 1.90685 1.64860 1.46098 1.38796 1.48101 1.07588 1.62435 1.15780 1.22149 0.94561 0.98529 0.87004 1.22775 1.01192 1.00252 0.95040 1.20156 0.90657 0.96034 0.86248 1.42430 1.77879 1.15178 1.00940 1.19178 1.36850 0.96566 0.84623 0.91225 1.24756 1.01976 0.96343 0.97821 1.69654 1.50064 1.11355 1.26957 0.86281 0.77683 0.78569 0.83716 1.21282 1.21707 1.21253 1.22202 1.01311 1.00192 0.94075 1.21609 0.78911 1.00894 0.99085 0.91958 0.91825 0.92461 0.89608 0.90441 0.90887 0.90178 0.91492 0.91445 0.91305 0.91565 0.91289 0.91105 0.90239 0.91160 0.90291 0.92175 0.90601 0.93378 0.78251 0.93417 0.91845 0.90486 0.89360 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.58 37.16 0.32 -0.87 16 2 C -0.15 -1.42 5.18 -26.73 -0.14 -1.56 16 3 C 0.08 0.90 1.84 -27.88 -0.05 0.85 16 4 H 0.08 0.92 7.10 -51.93 -0.37 0.55 16 5 O -0.35 -4.49 9.01 -55.09 -0.50 -4.99 16 6 C 0.07 0.72 2.08 -25.61 -0.05 0.67 16 7 C -0.15 -1.49 6.56 -25.07 -0.16 -1.65 16 8 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 9 C -0.12 -0.94 6.83 -25.07 -0.17 -1.11 16 10 C -0.12 -1.02 6.44 -25.61 -0.16 -1.19 16 11 C 0.52 7.82 7.12 -10.99 -0.08 7.74 16 12 O -0.53 -10.01 15.92 -14.31 -0.23 -10.24 16 13 N -0.60 -8.46 2.97 -172.52 -0.51 -8.97 16 14 C 0.10 1.25 4.92 -3.49 -0.02 1.23 16 15 C -0.15 -2.44 5.67 -26.39 -0.15 -2.58 16 16 C 0.18 3.34 2.73 -67.89 -0.19 3.16 16 17 N -0.72 -17.50 5.12 -53.39 -0.27 -17.77 16 18 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 19 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 22 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 C -0.14 -2.28 5.55 -26.63 -0.15 -2.43 16 27 C 0.12 1.70 6.43 -3.73 -0.02 1.67 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.48 5.79 -51.93 -0.30 0.18 16 30 H 0.06 0.39 8.01 -51.93 -0.42 -0.03 16 31 H 0.09 0.75 5.41 -51.93 -0.28 0.47 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.61 5.34 -51.93 -0.28 0.33 16 34 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.75 7.95 -51.93 -0.41 0.34 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.81 4.73 -51.93 -0.25 0.56 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 46 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 47 H 0.38 10.03 7.80 -40.82 -0.32 9.72 16 48 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 51 H 0.09 1.34 7.01 -51.93 -0.36 0.98 16 52 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -32.08 394.63 -10.59 -42.67 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -9.29 Total: 7.78 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.44 Total: -4.27 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.06 Total: -53.77 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.72 Total: -15.23 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.08 -10.59 -42.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997058945.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.733 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.94 seconds