Wall clock time and date at job start Tue Mar 31 2020 15:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46807 * 2 1 4 4 H 1.08998 * 109.47026 * 304.99864 * 3 2 1 5 5 O 1.42898 * 109.47129 * 65.00375 * 3 2 1 6 6 C 1.42905 * 113.99615 * 269.99836 * 5 3 2 7 7 C 1.54266 * 110.03129 * 267.16510 * 6 5 3 8 8 C 1.54886 * 104.19636 * 217.10931 * 7 6 5 9 9 C 1.54881 * 102.75204 * 37.94063 * 8 7 6 10 10 C 1.53873 * 110.03082 * 150.00063 * 6 5 3 11 11 C 1.50698 * 109.46730 * 185.00035 * 3 2 1 12 12 O 1.21286 * 119.99968 * 244.99806 * 11 3 2 13 13 N 1.34777 * 120.00214 * 65.00272 * 11 3 2 14 14 C 1.46925 * 120.62958 * 359.71986 * 13 11 3 15 15 C 1.53619 * 108.54801 * 126.36996 * 14 13 11 16 16 C 1.53045 * 109.24343 * 54.85232 * 15 14 13 17 17 N 1.46493 * 109.44962 * 178.49898 * 16 15 14 18 18 C 1.36932 * 120.00250 * 275.06049 * 17 16 15 19 19 H 1.07998 * 119.99965 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00340 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99619 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00263 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46870 * 60.00729 * 22 20 18 24 24 H 1.48500 * 109.46945 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47092 * 300.00510 * 22 20 18 26 26 C 1.53044 * 109.53579 * 298.51560 * 16 15 14 27 27 C 1.46925 * 120.63227 * 179.97438 * 13 11 3 28 28 H 1.08998 * 109.46712 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46806 * 300.00180 * 1 2 3 30 30 H 1.08996 * 109.47227 * 60.00062 * 1 2 3 31 31 H 1.09000 * 109.47066 * 240.00539 * 2 1 3 32 32 H 1.08996 * 109.47227 * 119.99938 * 2 1 3 33 33 H 1.09000 * 110.01842 * 28.60855 * 6 5 3 34 34 H 1.08998 * 110.48638 * 335.78856 * 7 6 5 35 35 H 1.09001 * 110.48707 * 98.42943 * 7 6 5 36 36 H 1.09004 * 110.75377 * 279.62714 * 8 7 6 37 37 H 1.09002 * 110.75623 * 156.26319 * 8 7 6 38 38 H 1.09000 * 110.48953 * 203.37904 * 9 8 7 39 39 H 1.09000 * 110.59588 * 80.79038 * 9 8 7 40 40 H 1.08996 * 110.02961 * 238.56738 * 10 6 5 41 41 H 1.09003 * 110.03151 * 359.95149 * 10 6 5 42 42 H 1.09007 * 109.58441 * 246.20270 * 14 13 11 43 43 H 1.09000 * 109.59014 * 6.62188 * 14 13 11 44 44 H 1.09005 * 109.63370 * 294.86301 * 15 14 13 45 45 H 1.09000 * 109.43249 * 174.72432 * 15 14 13 46 46 H 1.08997 * 109.45506 * 58.53136 * 16 15 14 47 47 H 0.97002 * 119.99910 * 95.06360 * 17 16 15 48 48 H 0.97004 * 119.99977 * 179.97438 * 21 20 18 49 49 H 1.08993 * 109.49863 * 301.41071 * 26 16 15 50 50 H 1.09007 * 109.52212 * 181.32928 * 26 16 15 51 51 H 1.08997 * 109.58825 * 353.37292 * 27 13 11 52 52 H 1.09008 * 109.58412 * 113.65513 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0814 1.2211 6 6 0.3927 2.7356 1.1660 7 6 0.5780 4.2168 0.7766 8 6 -0.4851 4.9664 1.6172 9 6 -0.4581 4.2014 2.9636 10 6 -0.2661 2.7258 2.5565 11 6 3.5419 1.4444 -0.1238 12 8 4.2250 1.8612 0.7875 13 7 4.1260 0.9829 -1.2474 14 6 3.3121 0.4692 -2.3575 15 6 3.7150 1.2091 -3.6420 16 6 5.2245 1.0690 -3.8525 17 7 5.6083 1.7427 -5.0954 18 6 5.5115 1.0816 -6.2906 19 1 5.1517 0.0637 -6.3171 20 6 5.8747 1.7202 -7.4685 21 7 6.3127 2.9610 -7.4362 22 14 5.7432 0.8181 -9.0989 23 1 4.3326 0.4156 -9.3295 24 1 6.1889 1.7130 -10.1970 25 1 6.6042 -0.3914 -9.0663 26 6 5.9666 1.7075 -2.6762 27 6 5.5890 0.9787 -1.3831 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 -0.2531 2.2368 0.4434 34 1 1.5801 4.5572 1.0374 35 1 0.3914 4.3576 -0.2880 36 1 -1.4678 4.8934 1.1511 37 1 -0.2004 6.0090 1.7593 38 1 -1.4009 4.3310 3.4951 39 1 0.3755 4.5388 3.5796 40 1 -1.2320 2.2230 2.5085 41 1 0.3820 2.2213 3.2732 42 1 3.4900 -0.5996 -2.4770 43 1 2.2568 0.6448 -2.1487 44 1 3.4565 2.2644 -3.5533 45 1 3.1874 0.7750 -4.4913 46 1 5.4856 0.0127 -3.9163 47 1 5.9311 2.6571 -5.0717 48 1 6.5668 3.4071 -8.2592 49 1 5.6869 2.7579 -2.5965 50 1 7.0418 1.6285 -2.8377 51 1 6.0364 1.4907 -0.5312 52 1 5.9494 -0.0493 -1.4221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997058945.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:13 Heat of formation + Delta-G solvation = -100.751480 kcal Electronic energy + Delta-G solvation = -29046.832052 eV Core-core repulsion = 25238.183073 eV Total energy + Delta-G solvation = -3808.648979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 5.68 seconds Orbital eigenvalues (eV) -41.62534 -40.02149 -38.67790 -37.17139 -36.21529 -34.39049 -33.52925 -32.06334 -31.04415 -29.78537 -29.36752 -27.64341 -26.33156 -24.58203 -24.03126 -22.91061 -21.71473 -21.59226 -21.31075 -20.31998 -19.06589 -18.46029 -18.03409 -17.03858 -16.75621 -16.59507 -16.31891 -15.89459 -15.49316 -15.38373 -15.32397 -15.12012 -14.73336 -14.68936 -14.37391 -14.27542 -13.84018 -13.46320 -13.31369 -13.18804 -13.13391 -12.94962 -12.88487 -12.78580 -12.64884 -12.22636 -12.19708 -12.15546 -12.04006 -12.01303 -11.95031 -11.86435 -11.65874 -11.49442 -11.34463 -11.31503 -10.94775 -10.74227 -10.32674 -9.72187 -9.00061 -7.91948 -5.20881 1.48980 1.50143 1.51790 1.57717 1.72607 2.57906 2.78897 3.38271 3.41892 3.62734 3.65837 3.79555 3.80727 3.86162 3.97537 4.01055 4.03735 4.13982 4.26135 4.33236 4.35647 4.39046 4.48857 4.51564 4.56536 4.61919 4.70328 4.72295 4.75740 4.81748 4.82727 4.87058 4.92567 4.99245 5.01517 5.05533 5.07149 5.11766 5.16709 5.20442 5.28382 5.29585 5.36757 5.44340 5.48432 5.54377 5.60718 6.18363 6.29277 6.39791 7.09548 7.35333 8.11141 8.34050 9.31636 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.002647 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.118624 B =10577.374957 C =10805.060270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.144 4.144 3 C 0.078 3.922 4 H 0.098 0.902 5 O -0.373 6.373 6 C 0.069 3.931 7 C -0.157 4.157 8 C -0.118 4.118 9 C -0.123 4.123 10 C -0.121 4.121 11 C 0.510 3.490 12 O -0.575 6.575 13 N -0.602 5.602 14 C 0.108 3.892 15 C -0.141 4.141 16 C 0.173 3.827 17 N -0.739 5.739 18 C -0.234 4.234 19 H 0.081 0.919 20 C -0.080 4.080 21 N -0.973 5.973 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.301 1.301 25 H -0.278 1.278 26 C -0.128 4.128 27 C 0.123 3.877 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.369 0.631 48 H 0.249 0.751 49 H 0.046 0.954 50 H 0.072 0.928 51 H 0.078 0.922 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.844 -4.958 18.758 26.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.182 4.182 3 C 0.017 3.983 4 H 0.116 0.884 5 O -0.292 6.292 6 C 0.012 3.988 7 C -0.195 4.195 8 C -0.156 4.156 9 C -0.160 4.160 10 C -0.158 4.158 11 C 0.299 3.701 12 O -0.454 6.454 13 N -0.336 5.336 14 C -0.014 4.014 15 C -0.182 4.182 16 C 0.065 3.935 17 N -0.378 5.378 18 C -0.366 4.366 19 H 0.099 0.901 20 C -0.271 4.271 21 N -0.624 5.624 22 Si 0.801 3.199 23 H -0.201 1.201 24 H -0.228 1.228 25 H -0.204 1.204 26 C -0.167 4.167 27 C 0.000 4.000 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.126 0.874 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.071 0.929 47 H 0.200 0.800 48 H 0.058 0.942 49 H 0.065 0.935 50 H 0.091 0.909 51 H 0.097 0.903 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.394 -4.894 19.280 26.424 hybrid contribution 0.693 0.524 -1.394 1.642 sum -16.700 -4.371 17.887 24.859 Atomic orbital electron populations 1.21946 0.93144 1.03609 1.02638 1.22191 0.98589 0.93247 1.04182 1.22002 0.90211 0.96647 0.89489 0.88426 1.88083 1.37809 1.70984 1.32327 1.23352 0.84177 0.91919 0.99333 1.22978 0.99779 0.96083 1.00623 1.22429 0.98860 0.98947 0.95341 1.22347 1.02249 0.94134 0.97305 1.22245 1.00738 0.97941 0.94911 1.21010 0.91080 0.76473 0.81586 1.90661 1.66177 1.48106 1.40468 1.48175 1.07458 1.61958 1.16008 1.22249 0.95807 0.99110 0.84244 1.22553 0.98726 0.99923 0.97026 1.20416 0.92567 0.95748 0.84745 1.42671 1.78191 1.14700 1.02224 1.19606 1.34625 0.96861 0.85481 0.90085 1.25568 1.03027 0.97222 1.01321 1.69826 1.52344 1.13099 1.27172 0.85237 0.78062 0.77264 0.79369 1.20110 1.22768 1.20432 1.22053 1.00838 0.99332 0.94438 1.21516 0.79641 1.01616 0.97226 0.90593 0.91957 0.91265 0.88447 0.91541 0.88882 0.93176 0.91070 0.89657 0.91276 0.89558 0.92653 0.88755 0.91783 0.88684 0.87361 0.93730 0.91049 0.92890 0.79964 0.94231 0.93498 0.90919 0.90327 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.58 71.98 0.62 -1.15 16 2 C -0.14 -2.33 5.18 30.60 0.16 -2.17 16 3 C 0.08 1.73 1.84 29.85 0.05 1.78 16 4 H 0.10 1.88 7.10 -2.39 -0.02 1.87 16 5 O -0.37 -9.46 9.01 -129.99 -1.17 -10.63 16 6 C 0.07 1.25 2.08 31.32 0.07 1.32 16 7 C -0.16 -2.99 6.56 31.67 0.21 -2.78 16 8 C -0.12 -1.68 6.91 31.88 0.22 -1.46 16 9 C -0.12 -1.71 6.83 31.67 0.22 -1.49 16 10 C -0.12 -1.82 6.44 31.32 0.20 -1.62 16 11 C 0.51 15.12 7.12 87.66 0.62 15.74 16 12 O -0.57 -22.21 15.92 15.94 0.25 -21.96 16 13 N -0.60 -15.97 2.97 -818.13 -2.43 -18.40 16 14 C 0.11 2.35 4.92 86.51 0.43 2.78 16 15 C -0.14 -4.33 5.67 30.82 0.17 -4.15 16 16 C 0.17 6.33 2.73 45.02 0.12 6.45 16 17 N -0.74 -35.94 5.12 -322.82 -1.65 -37.59 16 18 C -0.23 -12.42 9.93 84.03 0.83 -11.59 16 19 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 20 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 21 N -0.97 -59.23 13.06 21.65 0.28 -58.94 16 22 Si 0.97 44.99 29.55 68.60 2.03 47.02 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 C -0.13 -4.20 5.55 30.66 0.17 -4.03 16 27 C 0.12 3.45 6.43 86.35 0.55 4.01 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.74 5.79 -2.39 -0.01 0.72 16 30 H 0.07 0.64 8.01 -2.39 -0.02 0.62 16 31 H 0.10 1.32 5.41 -2.39 -0.01 1.31 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.28 5.34 -2.39 -0.01 1.27 16 34 H 0.05 1.24 8.08 -2.39 -0.02 1.22 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 1.17 7.95 -2.39 -0.02 1.15 16 42 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.11 1.79 4.73 -2.39 -0.01 1.78 16 44 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 47 H 0.37 19.86 7.80 -92.71 -0.72 19.14 16 48 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 49 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 51 H 0.08 2.41 7.01 -2.39 -0.02 2.40 16 52 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -71.45 394.63 2.60 -68.85 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: 0.17 Total: 34.03 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 5.12 Total: -2.37 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -3.80 Total: -114.94 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.92 Total: -32.58 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -71.45 2.60 -68.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997058945.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.906 kcal (2) G-P(sol) polarization free energy of solvation -71.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.68 seconds