Wall clock time and date at job start Tue Mar 31 2020 16:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46796 * 2 1 4 4 H 1.09003 * 109.47355 * 53.92505 * 3 2 1 5 5 O 1.42900 * 109.46957 * 293.92721 * 3 2 1 6 6 C 1.42905 * 114.00071 * 150.79907 * 5 3 2 7 7 C 1.54262 * 110.03084 * 270.13212 * 6 5 3 8 8 C 1.54886 * 104.19814 * 217.10318 * 7 6 5 9 9 C 1.54885 * 102.74862 * 37.94169 * 8 7 6 10 10 C 1.53869 * 110.03565 * 152.96425 * 6 5 3 11 11 C 1.50694 * 109.47134 * 173.92937 * 3 2 1 12 12 O 1.21288 * 120.00368 * 113.12167 * 11 3 2 13 13 N 1.34777 * 119.99948 * 293.11615 * 11 3 2 14 14 C 1.46926 * 120.62883 * 355.42650 * 13 11 3 15 15 C 1.53193 * 108.77464 * 233.60441 * 14 13 11 16 16 C 1.53043 * 109.31349 * 305.36603 * 15 14 13 17 17 C 1.53039 * 109.53746 * 61.36640 * 16 15 14 18 18 H 1.08996 * 109.49978 * 58.58816 * 17 16 15 19 19 N 1.46504 * 109.49625 * 178.65048 * 17 16 15 20 20 C 1.36929 * 119.99754 * 274.99846 * 19 17 16 21 21 H 1.08000 * 120.00489 * 0.02562 * 20 19 17 22 22 C 1.38823 * 119.99841 * 180.02562 * 20 19 17 23 23 N 1.31619 * 119.99649 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00026 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47153 * 59.99807 * 24 22 20 26 26 H 1.48501 * 109.46985 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47143 * 300.00026 * 24 22 20 28 28 C 1.46928 * 120.63263 * 175.42071 * 13 11 3 29 29 H 1.09005 * 109.46852 * 185.19991 * 1 2 3 30 30 H 1.08997 * 109.47330 * 305.19692 * 1 2 3 31 31 H 1.09001 * 109.47257 * 65.20219 * 1 2 3 32 32 H 1.08996 * 109.47323 * 240.00384 * 2 1 3 33 33 H 1.08998 * 109.47609 * 119.99830 * 2 1 3 34 34 H 1.09005 * 110.01454 * 31.57388 * 6 5 3 35 35 H 1.08999 * 110.49064 * 335.78341 * 7 6 5 36 36 H 1.09004 * 110.48584 * 98.42576 * 7 6 5 37 37 H 1.09002 * 110.75700 * 279.62766 * 8 7 6 38 38 H 1.09004 * 110.75853 * 156.26183 * 8 7 6 39 39 H 1.08997 * 110.49012 * 203.38208 * 9 8 7 40 40 H 1.08999 * 110.59750 * 80.78986 * 9 8 7 41 41 H 1.08995 * 110.03545 * 238.56715 * 10 6 5 42 42 H 1.09006 * 110.03162 * 359.95196 * 10 6 5 43 43 H 1.09000 * 109.58502 * 113.82077 * 14 13 11 44 44 H 1.08996 * 109.58669 * 353.39557 * 14 13 11 45 45 H 1.09001 * 109.49743 * 65.32119 * 15 14 13 46 46 H 1.09001 * 109.49643 * 185.38293 * 15 14 13 47 47 H 1.08998 * 109.45594 * 181.38677 * 16 15 14 48 48 H 1.09000 * 109.46102 * 301.35675 * 16 15 14 49 49 H 0.96998 * 119.99580 * 94.99897 * 19 17 16 50 50 H 0.97001 * 119.99592 * 180.02562 * 23 22 20 51 51 H 1.09005 * 109.58648 * 6.61054 * 28 13 11 52 52 H 1.09000 * 109.70701 * 246.24974 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5905 1.9868 0.8306 5 8 1.6835 2.0737 -1.2315 6 6 1.4929 3.4861 -1.1269 7 6 0.0206 3.7970 -0.7873 8 6 -0.2908 5.0844 -1.5901 9 6 0.4774 4.8551 -2.9153 10 6 1.7834 4.1589 -2.4799 11 6 3.5393 1.4453 0.1503 12 8 4.2399 1.8245 -0.7644 13 7 4.1021 1.0264 1.3011 14 6 3.2666 0.6590 2.4525 15 6 3.7343 1.4550 3.6750 16 6 5.2325 1.2242 3.8863 17 6 6.0045 1.7213 2.6620 18 1 5.7982 2.7803 2.5071 19 7 7.4407 1.5296 2.8787 20 6 8.1634 2.4759 3.5548 21 1 7.6747 3.3635 3.9287 22 6 9.5244 2.2945 3.7596 23 7 10.1201 1.2131 3.3035 24 14 10.5102 3.5851 4.6826 25 1 9.9591 3.7428 6.0525 26 1 11.9296 3.1570 4.7668 27 1 10.4253 4.8812 3.9627 28 6 5.5625 0.9283 1.4280 29 1 -0.3633 -1.0235 0.0931 30 1 -0.3634 0.5923 0.8397 31 1 -0.3634 0.4310 -0.9329 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.1486 3.8951 -0.3582 35 1 -0.6258 2.9807 -1.1096 36 1 -0.0946 3.9767 0.2816 37 1 0.0886 5.9646 -1.0710 38 1 -1.3613 5.1751 -1.7748 39 1 0.6956 5.8069 -3.3995 40 1 -0.0941 4.2105 -3.5832 41 1 2.5793 4.8950 -2.3677 42 1 2.0706 3.4081 -3.2162 43 1 3.3669 -0.4081 2.6510 44 1 2.2246 0.8966 2.2385 45 1 3.5493 2.5165 3.5105 46 1 3.1866 1.1226 4.5568 47 1 5.5627 1.7700 4.7701 48 1 5.4198 0.1596 4.0259 49 1 7.8796 0.7323 2.5431 50 1 11.0710 1.0862 3.4469 51 1 6.0354 1.3437 0.5381 52 1 5.8523 -0.1163 1.5419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000347500.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:29 Heat of formation + Delta-G solvation = -88.122030 kcal Electronic energy + Delta-G solvation = -29194.925746 eV Core-core repulsion = 25386.824422 eV Total energy + Delta-G solvation = -3808.101325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.48763 -38.91791 -37.31997 -36.20310 -34.63986 -33.43486 -32.08123 -31.25681 -28.93315 -28.82615 -28.05807 -26.87990 -24.93366 -23.69872 -22.26698 -21.92131 -21.03403 -20.54076 -20.05671 -19.02519 -17.56170 -17.19514 -17.00742 -16.08881 -15.66087 -15.15877 -14.96450 -14.58347 -14.50391 -14.11956 -14.04560 -13.83246 -13.55127 -13.47779 -13.40325 -12.91911 -12.79701 -12.64922 -12.41736 -12.31668 -12.08381 -11.86579 -11.40516 -11.33731 -11.30298 -11.13791 -11.02750 -10.93635 -10.90279 -10.84427 -10.68935 -10.63092 -10.43005 -10.35887 -10.27149 -10.09082 -9.71176 -9.10507 -8.91680 -8.39816 -6.99839 -5.78348 -3.07999 2.69927 2.98775 3.43250 3.47723 3.48683 3.54455 4.33546 4.36082 4.45117 4.57544 4.65345 4.68689 4.72475 4.90465 4.99671 5.08746 5.11953 5.18700 5.24684 5.27824 5.32320 5.40872 5.43516 5.48268 5.54849 5.55450 5.61480 5.65204 5.65611 5.71382 5.74687 5.79098 5.79909 5.84702 5.96067 6.00808 6.02540 6.07573 6.10724 6.14839 6.23105 6.37119 6.52963 6.68445 6.85931 7.02956 7.06150 7.57348 7.67760 8.32363 8.39870 9.50692 10.06014 10.41201 11.44099 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.002944 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.862666 B = 9507.973860 C =10365.310397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.078 3.922 4 H 0.082 0.918 5 O -0.346 6.346 6 C 0.085 3.915 7 C -0.148 4.148 8 C -0.123 4.123 9 C -0.123 4.123 10 C -0.120 4.120 11 C 0.487 3.513 12 O -0.525 6.525 13 N -0.604 5.604 14 C 0.104 3.896 15 C -0.134 4.134 16 C -0.137 4.137 17 C 0.169 3.831 18 H 0.048 0.952 19 N -0.721 5.721 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.106 3.894 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.384 0.616 50 H 0.256 0.744 51 H 0.092 0.908 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.422 0.526 -6.187 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.016 3.984 4 H 0.100 0.900 5 O -0.263 6.263 6 C 0.027 3.973 7 C -0.186 4.186 8 C -0.161 4.161 9 C -0.160 4.160 10 C -0.158 4.158 11 C 0.273 3.727 12 O -0.400 6.400 13 N -0.340 5.340 14 C -0.019 4.019 15 C -0.173 4.173 16 C -0.178 4.178 17 C 0.058 3.942 18 H 0.066 0.934 19 N -0.362 5.362 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.017 4.017 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.218 0.782 50 H 0.066 0.934 51 H 0.110 0.890 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.961 0.785 -6.804 25.883 hybrid contribution 0.905 0.528 0.901 1.382 sum -24.056 1.313 -5.903 24.804 Atomic orbital electron populations 1.21724 0.94468 1.01836 1.02395 1.21662 0.97121 0.93091 1.03922 1.22089 0.91146 0.96267 0.88893 0.90020 1.88041 1.88301 1.20194 1.29774 1.22848 0.94992 0.81141 0.98300 1.22949 0.97002 0.98591 1.00062 1.22427 1.00123 0.97396 0.96132 1.22344 0.96131 1.00310 0.97255 1.22158 0.97707 0.99518 0.96367 1.21352 0.91242 0.77742 0.82351 1.90713 1.63721 1.45975 1.39604 1.48165 1.07660 1.65805 1.12323 1.21877 0.94054 0.99636 0.86287 1.21950 0.98414 1.00210 0.96708 1.22281 0.92412 1.01610 1.01449 1.20465 0.85844 0.97072 0.90815 0.93353 1.42298 1.01892 1.24787 1.67208 1.19156 0.90552 0.99674 1.27733 0.91248 1.24749 0.96703 0.97843 1.01484 1.69652 1.10311 1.27222 1.50801 0.86260 0.79305 0.80969 0.79602 1.21271 1.21652 1.21225 1.21989 0.78072 1.00703 1.00948 0.92294 0.92779 0.91854 0.90354 0.89787 0.92005 0.90364 0.91652 0.91384 0.91410 0.91538 0.91460 0.90938 0.90132 0.91152 0.90375 0.91958 0.91252 0.91551 0.92415 0.78188 0.93391 0.88998 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.77 37.16 0.36 -0.71 16 2 C -0.12 -1.13 5.25 -26.73 -0.14 -1.27 16 3 C 0.08 0.91 1.49 -27.89 -0.04 0.86 16 4 H 0.08 0.80 6.81 -51.93 -0.35 0.44 16 5 O -0.35 -4.45 8.76 -55.05 -0.48 -4.93 16 6 C 0.09 0.96 3.14 -25.62 -0.08 0.88 16 7 C -0.15 -1.26 6.54 -25.08 -0.16 -1.43 16 8 C -0.12 -0.94 6.91 -24.74 -0.17 -1.11 16 9 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 10 C -0.12 -1.30 6.61 -25.61 -0.17 -1.47 16 11 C 0.49 7.62 6.98 -10.99 -0.08 7.54 16 12 O -0.52 -10.54 15.93 -14.26 -0.23 -10.77 16 13 N -0.60 -8.91 2.97 -172.76 -0.51 -9.42 16 14 C 0.10 1.15 4.91 -3.71 -0.02 1.14 16 15 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 16 C -0.14 -2.30 5.46 -26.69 -0.15 -2.45 16 17 C 0.17 3.38 2.92 -67.81 -0.20 3.18 16 18 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 19 N -0.72 -18.06 5.13 -53.30 -0.27 -18.34 16 20 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 C 0.11 1.90 5.91 -3.71 -0.02 1.88 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.51 7.99 -51.93 -0.41 0.09 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.70 6.01 -51.93 -0.31 0.38 16 34 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 35 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 43 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 44 H 0.08 0.66 5.08 -51.93 -0.26 0.39 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.38 10.20 7.80 -40.82 -0.32 9.89 16 50 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 51 H 0.09 1.90 7.00 -51.93 -0.36 1.54 16 52 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 401.83 15.07 6.06 6.06 Total: -1.00 -32.65 401.83 -10.75 -43.41 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -9.57 Total: 7.20 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -1.44 Total: -3.20 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.06 Total: -55.20 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.71 Total: -15.70 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.65 -10.75 -43.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000347500.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.716 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds