Wall clock time and date at job start Tue Mar 31 2020 16:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46796 * 2 1 4 4 H 1.09003 * 109.47355 * 53.92505 * 3 2 1 5 5 O 1.42900 * 109.46957 * 293.92721 * 3 2 1 6 6 C 1.42905 * 114.00071 * 150.79907 * 5 3 2 7 7 C 1.54262 * 110.03084 * 270.13212 * 6 5 3 8 8 C 1.54886 * 104.19814 * 217.10318 * 7 6 5 9 9 C 1.54885 * 102.74862 * 37.94169 * 8 7 6 10 10 C 1.53869 * 110.03565 * 152.96425 * 6 5 3 11 11 C 1.50694 * 109.47134 * 173.92937 * 3 2 1 12 12 O 1.21288 * 120.00368 * 113.12167 * 11 3 2 13 13 N 1.34777 * 119.99948 * 293.11615 * 11 3 2 14 14 C 1.46926 * 120.62883 * 355.42650 * 13 11 3 15 15 C 1.53193 * 108.77464 * 233.60441 * 14 13 11 16 16 C 1.53043 * 109.31349 * 305.36603 * 15 14 13 17 17 C 1.53039 * 109.53746 * 61.36640 * 16 15 14 18 18 H 1.08996 * 109.49978 * 58.58816 * 17 16 15 19 19 N 1.46504 * 109.49625 * 178.65048 * 17 16 15 20 20 C 1.36929 * 119.99754 * 274.99846 * 19 17 16 21 21 H 1.08000 * 120.00489 * 0.02562 * 20 19 17 22 22 C 1.38823 * 119.99841 * 180.02562 * 20 19 17 23 23 N 1.31619 * 119.99649 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00026 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47153 * 59.99807 * 24 22 20 26 26 H 1.48501 * 109.46985 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47143 * 300.00026 * 24 22 20 28 28 C 1.46928 * 120.63263 * 175.42071 * 13 11 3 29 29 H 1.09005 * 109.46852 * 185.19991 * 1 2 3 30 30 H 1.08997 * 109.47330 * 305.19692 * 1 2 3 31 31 H 1.09001 * 109.47257 * 65.20219 * 1 2 3 32 32 H 1.08996 * 109.47323 * 240.00384 * 2 1 3 33 33 H 1.08998 * 109.47609 * 119.99830 * 2 1 3 34 34 H 1.09005 * 110.01454 * 31.57388 * 6 5 3 35 35 H 1.08999 * 110.49064 * 335.78341 * 7 6 5 36 36 H 1.09004 * 110.48584 * 98.42576 * 7 6 5 37 37 H 1.09002 * 110.75700 * 279.62766 * 8 7 6 38 38 H 1.09004 * 110.75853 * 156.26183 * 8 7 6 39 39 H 1.08997 * 110.49012 * 203.38208 * 9 8 7 40 40 H 1.08999 * 110.59750 * 80.78986 * 9 8 7 41 41 H 1.08995 * 110.03545 * 238.56715 * 10 6 5 42 42 H 1.09006 * 110.03162 * 359.95196 * 10 6 5 43 43 H 1.09000 * 109.58502 * 113.82077 * 14 13 11 44 44 H 1.08996 * 109.58669 * 353.39557 * 14 13 11 45 45 H 1.09001 * 109.49743 * 65.32119 * 15 14 13 46 46 H 1.09001 * 109.49643 * 185.38293 * 15 14 13 47 47 H 1.08998 * 109.45594 * 181.38677 * 16 15 14 48 48 H 1.09000 * 109.46102 * 301.35675 * 16 15 14 49 49 H 0.96998 * 119.99580 * 94.99897 * 19 17 16 50 50 H 0.97001 * 119.99592 * 180.02562 * 23 22 20 51 51 H 1.09005 * 109.58648 * 6.61054 * 28 13 11 52 52 H 1.09000 * 109.70701 * 246.24974 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5905 1.9868 0.8306 5 8 1.6835 2.0737 -1.2315 6 6 1.4929 3.4861 -1.1269 7 6 0.0206 3.7970 -0.7873 8 6 -0.2908 5.0844 -1.5901 9 6 0.4774 4.8551 -2.9153 10 6 1.7834 4.1589 -2.4799 11 6 3.5393 1.4453 0.1503 12 8 4.2399 1.8245 -0.7644 13 7 4.1021 1.0264 1.3011 14 6 3.2666 0.6590 2.4525 15 6 3.7343 1.4550 3.6750 16 6 5.2325 1.2242 3.8863 17 6 6.0045 1.7213 2.6620 18 1 5.7982 2.7803 2.5071 19 7 7.4407 1.5296 2.8787 20 6 8.1634 2.4759 3.5548 21 1 7.6747 3.3635 3.9287 22 6 9.5244 2.2945 3.7596 23 7 10.1201 1.2131 3.3035 24 14 10.5102 3.5851 4.6826 25 1 9.9591 3.7428 6.0525 26 1 11.9296 3.1570 4.7668 27 1 10.4253 4.8812 3.9627 28 6 5.5625 0.9283 1.4280 29 1 -0.3633 -1.0235 0.0931 30 1 -0.3634 0.5923 0.8397 31 1 -0.3634 0.4310 -0.9329 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.1486 3.8951 -0.3582 35 1 -0.6258 2.9807 -1.1096 36 1 -0.0946 3.9767 0.2816 37 1 0.0886 5.9646 -1.0710 38 1 -1.3613 5.1751 -1.7748 39 1 0.6956 5.8069 -3.3995 40 1 -0.0941 4.2105 -3.5832 41 1 2.5793 4.8950 -2.3677 42 1 2.0706 3.4081 -3.2162 43 1 3.3669 -0.4081 2.6510 44 1 2.2246 0.8966 2.2385 45 1 3.5493 2.5165 3.5105 46 1 3.1866 1.1226 4.5568 47 1 5.5627 1.7700 4.7701 48 1 5.4198 0.1596 4.0259 49 1 7.8796 0.7323 2.5431 50 1 11.0710 1.0862 3.4469 51 1 6.0354 1.3437 0.5381 52 1 5.8523 -0.1163 1.5419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000347500.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:28 Heat of formation + Delta-G solvation = -107.433854 kcal Electronic energy + Delta-G solvation = -29195.763170 eV Core-core repulsion = 25386.824422 eV Total energy + Delta-G solvation = -3808.938748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.64304 -39.90383 -38.61983 -37.13484 -36.29312 -34.48556 -33.53932 -32.78862 -30.37436 -29.65672 -28.97495 -27.89790 -26.26409 -25.48500 -23.45900 -22.92456 -21.78745 -21.43744 -21.28492 -20.29546 -19.19719 -18.58291 -18.07372 -17.05605 -16.80933 -16.63308 -16.17192 -15.81289 -15.65448 -15.33964 -15.22477 -15.02948 -14.82167 -14.69716 -14.49906 -14.27172 -13.93193 -13.71555 -13.47093 -13.21816 -12.98619 -12.87300 -12.85490 -12.70541 -12.38477 -12.23931 -12.21294 -12.03122 -12.01667 -11.92524 -11.84143 -11.83070 -11.70968 -11.60687 -11.54055 -11.46087 -11.23771 -10.93008 -10.21930 -9.71572 -9.05972 -7.98085 -5.27913 1.43985 1.47528 1.49274 1.53599 1.81872 2.53455 2.63712 3.33759 3.38757 3.59891 3.66566 3.74766 3.86522 3.90108 3.99059 4.00156 4.06085 4.11369 4.23393 4.26599 4.32973 4.40158 4.51508 4.53522 4.54932 4.59019 4.69908 4.74177 4.79048 4.80004 4.84135 4.91032 4.92964 5.03242 5.04281 5.08461 5.13878 5.14462 5.20176 5.25660 5.27416 5.37905 5.39501 5.44050 5.48313 5.49683 5.57051 6.12705 6.23397 6.41706 7.10544 7.29124 8.01826 8.26432 9.25070 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.002944 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.862666 B = 9507.973860 C =10365.310397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.085 3.915 4 H 0.111 0.889 5 O -0.362 6.362 6 C 0.078 3.922 7 C -0.139 4.139 8 C -0.120 4.120 9 C -0.118 4.118 10 C -0.127 4.127 11 C 0.478 3.522 12 O -0.582 6.582 13 N -0.600 5.600 14 C 0.099 3.901 15 C -0.125 4.125 16 C -0.127 4.127 17 C 0.168 3.832 18 H 0.027 0.973 19 N -0.736 5.736 20 C -0.242 4.242 21 H 0.072 0.928 22 C -0.074 4.074 23 N -0.969 5.969 24 Si 0.974 3.026 25 H -0.274 1.274 26 H -0.294 1.294 27 H -0.281 1.281 28 C 0.118 3.882 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.117 0.883 45 H 0.060 0.940 46 H 0.107 0.893 47 H 0.046 0.954 48 H 0.059 0.941 49 H 0.373 0.627 50 H 0.252 0.748 51 H 0.054 0.946 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.197 0.665 -4.537 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.129 0.871 5 O -0.280 6.280 6 C 0.020 3.980 7 C -0.177 4.177 8 C -0.157 4.157 9 C -0.155 4.155 10 C -0.164 4.164 11 C 0.267 3.733 12 O -0.461 6.461 13 N -0.334 5.334 14 C -0.022 4.022 15 C -0.163 4.163 16 C -0.168 4.168 17 C 0.059 3.941 18 H 0.045 0.955 19 N -0.376 5.376 20 C -0.374 4.374 21 H 0.090 0.910 22 C -0.266 4.266 23 N -0.619 5.619 24 Si 0.802 3.198 25 H -0.200 1.200 26 H -0.220 1.220 27 H -0.208 1.208 28 C -0.006 4.006 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.135 0.865 45 H 0.078 0.922 46 H 0.126 0.874 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.205 0.795 50 H 0.061 0.939 51 H 0.073 0.927 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -28.820 0.931 -5.124 29.287 hybrid contribution 2.073 0.492 0.328 2.156 sum -26.746 1.423 -4.796 27.210 Atomic orbital electron populations 1.21697 0.92332 1.03091 1.02719 1.21723 0.98824 0.91070 1.03872 1.22266 0.87734 0.98161 0.89493 0.87142 1.88036 1.88107 1.20997 1.30872 1.23001 0.96848 0.80423 0.97733 1.22897 0.94471 0.99156 1.01145 1.22448 1.01097 0.97011 0.95163 1.22328 0.94686 1.00440 0.98075 1.22206 0.99062 0.99009 0.96163 1.22337 0.93087 0.76282 0.81560 1.90686 1.65356 1.48492 1.41607 1.48249 1.06310 1.65290 1.13590 1.22261 0.95159 1.00770 0.84003 1.21917 0.94899 1.00604 0.98903 1.22066 0.95424 1.01027 0.98241 1.20622 0.83854 0.96316 0.93317 0.95522 1.42480 1.04025 1.23947 1.67135 1.19505 0.91057 0.99952 1.26867 0.90962 1.25572 0.97846 1.00038 1.03144 1.69812 1.10182 1.29202 1.52681 0.85214 0.77397 0.78416 0.78756 1.19967 1.22011 1.20766 1.21559 0.80629 1.00181 0.98263 0.90878 0.90876 0.92837 0.92295 0.88052 0.93758 0.89744 0.90150 0.91140 0.89475 0.90681 0.90968 0.92099 0.92196 0.88963 0.86499 0.92163 0.87430 0.93525 0.92256 0.79499 0.93922 0.92697 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.77 71.98 0.70 -0.82 16 2 C -0.12 -1.88 5.25 30.59 0.16 -1.72 16 3 C 0.08 1.82 1.49 29.85 0.04 1.87 16 4 H 0.11 1.74 6.81 -2.39 -0.02 1.72 16 5 O -0.36 -9.16 8.76 -130.03 -1.14 -10.30 16 6 C 0.08 1.71 3.14 31.32 0.10 1.81 16 7 C -0.14 -2.01 6.54 31.67 0.21 -1.80 16 8 C -0.12 -1.51 6.91 31.88 0.22 -1.29 16 9 C -0.12 -1.82 6.83 31.67 0.22 -1.61 16 10 C -0.13 -2.84 6.61 31.32 0.21 -2.63 16 11 C 0.48 14.99 6.98 87.65 0.61 15.61 16 12 O -0.58 -24.72 15.93 15.89 0.25 -24.46 16 13 N -0.60 -17.21 2.97 -818.89 -2.43 -19.65 16 14 C 0.10 1.82 4.91 86.36 0.42 2.24 16 15 C -0.12 -2.64 6.08 30.67 0.19 -2.45 16 16 C -0.13 -4.15 5.46 30.62 0.17 -3.98 16 17 C 0.17 6.89 2.92 45.07 0.13 7.02 16 18 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 19 N -0.74 -38.24 5.13 -322.56 -1.65 -39.89 16 20 C -0.24 -13.77 9.93 84.04 0.83 -12.93 16 21 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 22 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 23 N -0.97 -60.24 13.06 21.66 0.28 -59.96 16 24 Si 0.97 46.87 29.55 68.60 2.03 48.90 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 26 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 27 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 28 C 0.12 4.39 5.91 86.36 0.51 4.90 16 29 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.70 7.99 -2.39 -0.02 0.68 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.26 6.01 -2.39 -0.01 1.24 16 34 H 0.04 1.11 7.84 -2.38 -0.02 1.09 16 35 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 36 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.55 7.96 -2.38 -0.02 1.54 16 43 H 0.09 1.40 8.13 -2.39 -0.02 1.38 16 44 H 0.12 1.32 5.08 -2.39 -0.01 1.30 16 45 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 48 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.37 20.74 7.80 -92.71 -0.72 20.02 16 50 H 0.25 15.21 8.31 -92.71 -0.77 14.43 16 51 H 0.05 2.44 7.00 -2.38 -0.02 2.43 16 52 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -76.12 401.83 2.68 -73.44 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.16 Total: 31.56 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 5.19 Total: 0.38 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -3.80 Total: -119.50 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.89 Total: -34.76 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -76.12 2.68 -73.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000347500.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.998 kcal (2) G-P(sol) polarization free energy of solvation -76.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds