Wall clock time and date at job start Tue Mar 31 2020 16:00:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53003 * 109.47078 * 2 1
4 4 H 1.09010 * 109.46940 * 54.63679 * 3 2 1
5 5 O 1.42895 * 109.47109 * 294.63910 * 3 2 1
6 6 C 1.42902 * 114.00131 * 146.74789 * 5 3 2
7 7 C 1.54268 * 110.03237 * 271.58318 * 6 5 3
8 8 C 1.54889 * 104.19699 * 217.10475 * 7 6 5
9 9 C 1.54891 * 102.74847 * 37.93867 * 8 7 6
10 10 C 1.53876 * 110.03302 * 154.41587 * 6 5 3
11 11 C 1.50699 * 109.46960 * 174.63271 * 3 2 1
12 12 O 1.21288 * 119.99637 * 112.46919 * 11 3 2
13 13 N 1.34769 * 120.00419 * 292.46237 * 11 3 2
14 14 C 1.46926 * 120.62924 * 355.69333 * 13 11 3
15 15 C 1.53203 * 108.77577 * 126.41177 * 14 13 11
16 16 C 1.53039 * 109.31007 * 54.63310 * 15 14 13
17 17 C 1.53037 * 109.54014 * 298.63382 * 16 15 14
18 18 H 1.09001 * 109.52540 * 301.40023 * 17 16 15
19 19 N 1.46498 * 109.49820 * 181.31601 * 17 16 15
20 20 C 1.36944 * 119.99936 * 85.16685 * 19 17 16
21 21 H 1.07998 * 119.99536 * 359.71791 * 20 19 17
22 22 C 1.38810 * 120.00251 * 179.72697 * 20 19 17
23 23 N 1.31616 * 120.00037 * 179.97438 * 22 20 19
24 24 Si 1.86799 * 119.99738 * 359.97438 * 22 20 19
25 25 H 1.48497 * 109.47299 * 90.00349 * 24 22 20
26 26 H 1.48506 * 109.47131 * 210.00181 * 24 22 20
27 27 H 1.48500 * 109.47526 * 329.99815 * 24 22 20
28 28 C 1.46922 * 120.63366 * 175.71162 * 13 11 3
29 29 H 1.08997 * 109.47418 * 65.12472 * 1 2 3
30 30 H 1.09002 * 109.47217 * 185.12560 * 1 2 3
31 31 H 1.09000 * 109.47285 * 305.12679 * 1 2 3
32 32 H 1.08996 * 109.46911 * 240.00305 * 2 1 3
33 33 H 1.09001 * 109.46969 * 119.99650 * 2 1 3
34 34 H 1.09006 * 110.01660 * 33.02190 * 6 5 3
35 35 H 1.09002 * 110.48027 * 335.78226 * 7 6 5
36 36 H 1.09001 * 110.48876 * 98.42346 * 7 6 5
37 37 H 1.08997 * 110.75728 * 279.62764 * 8 7 6
38 38 H 1.08997 * 110.91281 * 156.32757 * 8 7 6
39 39 H 1.08993 * 110.48628 * 203.37656 * 9 8 7
40 40 H 1.09010 * 110.48557 * 80.73458 * 9 8 7
41 41 H 1.09003 * 110.02886 * 238.56957 * 10 6 5
42 42 H 1.08997 * 110.03338 * 359.97438 * 10 6 5
43 43 H 1.08994 * 109.58985 * 246.19546 * 14 13 11
44 44 H 1.08997 * 109.59178 * 6.48463 * 14 13 11
45 45 H 1.08995 * 109.49688 * 174.58889 * 15 14 13
46 46 H 1.09001 * 109.49554 * 294.68372 * 15 14 13
47 47 H 1.09005 * 109.45584 * 178.61571 * 16 15 14
48 48 H 1.09004 * 109.45943 * 58.65860 * 16 15 14
49 49 H 0.97000 * 120.00542 * 264.88686 * 19 17 16
50 50 H 0.96998 * 120.00001 * 179.97438 * 23 22 20
51 51 H 1.09004 * 109.58792 * 113.79857 * 28 13 11
52 52 H 1.09002 * 109.70286 * 353.44623 * 28 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6003 1.9834 0.8381
5 8 1.6692 2.0788 -1.2246
6 6 1.3911 3.4744 -1.0935
7 6 -0.0959 3.6861 -0.7414
8 6 -0.4920 4.9655 -1.5193
9 6 0.2814 4.8085 -2.8521
10 6 1.6310 4.1880 -2.4355
11 6 3.5411 1.4446 0.1329
12 8 4.2313 1.8164 -0.7926
13 7 4.1167 1.0334 1.2800
14 6 3.2941 0.6698 2.4419
15 6 3.6893 -0.7360 2.9053
16 6 5.1969 -0.7782 3.1646
17 6 5.9482 -0.4681 1.8679
18 1 5.6710 -1.1942 1.1037
19 7 7.3913 -0.5396 2.1098
20 6 8.0387 -1.7442 2.0383
21 1 7.4845 -2.6421 1.8080
22 6 9.4070 -1.8112 2.2619
23 7 10.0291 -2.9691 2.1936
24 14 10.3655 -0.2580 2.6597
25 1 10.3864 -0.0522 4.1302
26 1 11.7570 -0.3931 2.1590
27 1 9.7152 0.9061 2.0061
28 6 5.5786 0.9406 1.3928
29 1 -0.3634 0.4323 -0.9323
30 1 -0.3634 -1.0236 0.0918
31 1 -0.3634 0.5913 0.8405
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 2.0243 3.9100 -0.3205
35 1 -0.6916 2.8366 -1.0756
36 1 -0.2160 3.8391 0.3311
37 1 -0.1655 5.8584 -0.9862
38 1 -1.5669 4.9953 -1.6977
39 1 0.4366 5.7806 -3.3199
40 1 -0.2534 4.1402 -3.5271
41 1 2.3799 4.9705 -2.3136
42 1 1.9600 3.4699 -3.1867
43 1 3.4660 1.3822 3.2487
44 1 2.2407 0.6818 2.1620
45 1 3.1551 -0.9799 3.8235
46 1 3.4328 -1.4596 2.1315
47 1 5.4769 -1.7706 3.5180
48 1 5.4562 -0.0371 3.9207
49 1 7.8890 0.2669 2.3167
50 1 10.9853 -3.0158 2.3495
51 1 5.9369 1.6753 2.1140
52 1 6.0349 1.1300 0.4211
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001000347507.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:00:38
Heat of formation + Delta-G solvation = -82.653238 kcal
Electronic energy + Delta-G solvation = -29217.436003 eV
Core-core repulsion = 25409.571823 eV
Total energy + Delta-G solvation = -3807.864180 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-40.57168 -39.01292 -37.41916 -36.27629 -34.79865 -33.42417 -32.16204 -31.41477
-29.22457 -29.00053 -28.22792 -26.99627 -24.99115 -23.58441 -22.07328 -21.98923
-21.09584 -20.61942 -20.24255 -19.03120 -17.66547 -17.61261 -17.07281 -16.14635
-15.73939 -15.28476 -14.96699 -14.78825 -14.47768 -14.25613 -14.08044 -13.87252
-13.69402 -13.61255 -13.42820 -12.89536 -12.77606 -12.63539 -12.53838 -12.42919
-12.08158 -11.94662 -11.49467 -11.41753 -11.37987 -11.19262 -11.15595 -11.06417
-11.01539 -10.90826 -10.75048 -10.69349 -10.53212 -10.43326 -10.31369 -10.10236
-9.61677 -9.17473 -8.95322 -8.49013 -7.31178 -5.78836 -3.15518 2.61672
2.91821 3.37104 3.40223 3.44965 3.49527 4.26146 4.28889 4.39322
4.57674 4.60803 4.66477 4.69017 4.80344 4.95373 5.03235 5.05102
5.14780 5.17458 5.21084 5.26691 5.33754 5.35909 5.37782 5.41857
5.49276 5.50931 5.55810 5.60525 5.63331 5.68146 5.70262 5.75082
5.80382 5.88402 5.93679 5.97827 6.01406 6.02848 6.04685 6.11660
6.28748 6.42009 6.56207 6.76533 6.92291 7.00366 7.48695 7.95882
8.25389 8.39542 9.17058 9.89510 10.08255 11.39238
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.020024 B = 0.002863 C = 0.002658
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1398.000797 B = 9778.737101 C =10531.141423
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.125 4.125
3 C 0.079 3.921
4 H 0.081 0.919
5 O -0.344 6.344
6 C 0.085 3.915
7 C -0.149 4.149
8 C -0.123 4.123
9 C -0.123 4.123
10 C -0.120 4.120
11 C 0.489 3.511
12 O -0.524 6.524
13 N -0.604 5.604
14 C 0.100 3.900
15 C -0.134 4.134
16 C -0.137 4.137
17 C 0.173 3.827
18 H 0.059 0.941
19 N -0.745 5.745
20 C -0.243 4.243
21 H 0.091 0.909
22 C 0.006 3.994
23 N -0.932 5.932
24 Si 0.884 3.116
25 H -0.284 1.284
26 H -0.291 1.291
27 H -0.276 1.276
28 C 0.103 3.897
29 H 0.062 0.938
30 H 0.059 0.941
31 H 0.052 0.948
32 H 0.079 0.921
33 H 0.088 0.912
34 H 0.060 0.940
35 H 0.079 0.921
36 H 0.065 0.935
37 H 0.066 0.934
38 H 0.068 0.932
39 H 0.066 0.934
40 H 0.068 0.932
41 H 0.071 0.929
42 H 0.081 0.919
43 H 0.068 0.932
44 H 0.082 0.918
45 H 0.071 0.929
46 H 0.066 0.934
47 H 0.071 0.929
48 H 0.056 0.944
49 H 0.361 0.639
50 H 0.260 0.740
51 H 0.062 0.938
52 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.629 13.789 -2.237 29.189
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.163 4.163
3 C 0.017 3.983
4 H 0.099 0.901
5 O -0.261 6.261
6 C 0.027 3.973
7 C -0.187 4.187
8 C -0.161 4.161
9 C -0.161 4.161
10 C -0.158 4.158
11 C 0.275 3.725
12 O -0.400 6.400
13 N -0.340 5.340
14 C -0.023 4.023
15 C -0.173 4.173
16 C -0.177 4.177
17 C 0.063 3.937
18 H 0.077 0.923
19 N -0.388 5.388
20 C -0.373 4.373
21 H 0.108 0.892
22 C -0.190 4.190
23 N -0.580 5.580
24 Si 0.714 3.286
25 H -0.211 1.211
26 H -0.217 1.217
27 H -0.202 1.202
28 C -0.020 4.020
29 H 0.081 0.919
30 H 0.078 0.922
31 H 0.071 0.929
32 H 0.098 0.902
33 H 0.106 0.894
34 H 0.078 0.922
35 H 0.098 0.902
36 H 0.083 0.917
37 H 0.085 0.915
38 H 0.086 0.914
39 H 0.085 0.915
40 H 0.086 0.914
41 H 0.090 0.910
42 H 0.100 0.900
43 H 0.087 0.913
44 H 0.100 0.900
45 H 0.089 0.911
46 H 0.085 0.915
47 H 0.090 0.910
48 H 0.074 0.926
49 H 0.194 0.806
50 H 0.070 0.930
51 H 0.080 0.920
52 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -25.183 13.653 -2.984 28.801
hybrid contribution 0.984 1.111 0.766 1.671
sum -24.199 14.765 -2.218 28.434
Atomic orbital electron populations
1.21726 0.94460 1.01947 1.02263 1.21761 0.97140 0.93076 1.04306
1.22078 0.90942 0.96299 0.88948 0.90083 1.88068 1.87119 1.21517
1.29445 1.22862 0.94592 0.81735 0.98145 1.22967 0.96696 0.98929
1.00077 1.22425 1.00025 0.97441 0.96193 1.22350 0.95762 1.00654
0.97291 1.22157 0.97546 0.99455 0.96620 1.21343 0.91213 0.77737
0.82188 1.90709 1.64479 1.46244 1.38531 1.48125 1.07454 1.65923
1.12482 1.21927 0.94735 0.97329 0.88264 1.21954 0.98349 0.95662
1.01318 1.22234 0.92508 1.02876 1.00099 1.20447 0.84832 0.93698
0.94736 0.92340 1.42678 1.02835 1.07347 1.85909 1.19029 0.91314
0.86072 1.40898 0.89162 1.24666 0.96322 0.96317 1.01686 1.69696
1.09243 1.23010 1.56042 0.86556 0.79932 0.83894 0.78202 1.21081
1.21693 1.20248 1.21991 0.78548 0.98365 1.03061 0.91887 0.92173
0.92871 0.90194 0.89397 0.92202 0.90233 0.91674 0.91485 0.91367
0.91525 0.91368 0.91041 0.90026 0.91336 0.89970 0.91054 0.91498
0.90981 0.92555 0.80602 0.93007 0.91983 0.88939
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.10 9.76 37.16 0.36 -0.73 16
2 C -0.13 -1.22 5.19 -26.73 -0.14 -1.36 16
3 C 0.08 0.89 1.49 -27.88 -0.04 0.85 16
4 H 0.08 0.72 6.96 -51.92 -0.36 0.36 16
5 O -0.34 -4.29 8.73 -55.03 -0.48 -4.77 16
6 C 0.08 0.87 3.16 -25.61 -0.08 0.79 16
7 C -0.15 -1.15 6.51 -25.07 -0.16 -1.31 16
8 C -0.12 -0.83 6.91 -24.74 -0.17 -1.00 16
9 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16
10 C -0.12 -1.19 6.61 -25.61 -0.17 -1.36 16
11 C 0.49 7.39 7.06 -10.99 -0.08 7.31 16
12 O -0.52 -10.23 15.95 -14.24 -0.23 -10.45 16
13 N -0.60 -8.50 2.97 -172.77 -0.51 -9.02 16
14 C 0.10 1.04 5.47 -3.71 -0.02 1.02 16
15 C -0.13 -1.54 5.90 -26.61 -0.16 -1.70 16
16 C -0.14 -2.18 5.47 -26.69 -0.15 -2.32 16
17 C 0.17 3.29 2.92 -67.81 -0.20 3.09 16
18 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16
19 N -0.75 -17.48 4.93 -53.31 -0.26 -17.74 16
20 C -0.24 -6.81 10.41 -15.06 -0.16 -6.97 16
21 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16
22 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16
23 N -0.93 -29.26 13.97 55.49 0.78 -28.49 16
24 Si 0.88 22.14 27.73 -169.99 -4.71 17.43 16
25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16
26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16
27 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16
28 C 0.10 1.75 5.89 -3.71 -0.02 1.73 16
29 H 0.06 0.51 7.97 -51.93 -0.41 0.10 16
30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16
32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
33 H 0.09 0.78 5.11 -51.93 -0.27 0.52 16
34 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16
35 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16
36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
40 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16
41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
42 H 0.08 0.93 7.95 -51.93 -0.41 0.52 16
43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
44 H 0.08 0.65 4.54 -51.93 -0.24 0.41 16
45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
46 H 0.07 0.79 7.54 -51.93 -0.39 0.40 16
47 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16
48 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16
49 H 0.36 8.34 5.66 -40.82 -0.23 8.11 16
50 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16
51 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
52 H 0.09 1.80 7.04 -51.93 -0.37 1.43 16
LS Contribution 397.25 15.07 5.99 5.99
Total: -1.00 -33.61 397.25 -10.32 -43.93
By element:
Atomic # 1 Polarization: 15.52 SS G_CDS: -9.44 Total: 6.09 kcal
Atomic # 6 Polarization: -1.52 SS G_CDS: -1.45 Total: -2.97 kcal
Atomic # 7 Polarization: -55.24 SS G_CDS: 0.00 Total: -55.24 kcal
Atomic # 8 Polarization: -14.52 SS G_CDS: -0.71 Total: -15.23 kcal
Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -33.61 -10.32 -43.93 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001000347507.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.721 kcal
(2) G-P(sol) polarization free energy of solvation -33.614 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.334 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds