Wall clock time and date at job start Tue Mar 31 2020 16:00:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53003 * 109.47078 * 2 1
4 4 H 1.09010 * 109.46940 * 54.63679 * 3 2 1
5 5 O 1.42895 * 109.47109 * 294.63910 * 3 2 1
6 6 C 1.42902 * 114.00131 * 146.74789 * 5 3 2
7 7 C 1.54268 * 110.03237 * 271.58318 * 6 5 3
8 8 C 1.54889 * 104.19699 * 217.10475 * 7 6 5
9 9 C 1.54891 * 102.74847 * 37.93867 * 8 7 6
10 10 C 1.53876 * 110.03302 * 154.41587 * 6 5 3
11 11 C 1.50699 * 109.46960 * 174.63271 * 3 2 1
12 12 O 1.21288 * 119.99637 * 112.46919 * 11 3 2
13 13 N 1.34769 * 120.00419 * 292.46237 * 11 3 2
14 14 C 1.46926 * 120.62924 * 355.69333 * 13 11 3
15 15 C 1.53203 * 108.77577 * 126.41177 * 14 13 11
16 16 C 1.53039 * 109.31007 * 54.63310 * 15 14 13
17 17 C 1.53037 * 109.54014 * 298.63382 * 16 15 14
18 18 H 1.09001 * 109.52540 * 301.40023 * 17 16 15
19 19 N 1.46498 * 109.49820 * 181.31601 * 17 16 15
20 20 C 1.36944 * 119.99936 * 85.16685 * 19 17 16
21 21 H 1.07998 * 119.99536 * 359.71791 * 20 19 17
22 22 C 1.38810 * 120.00251 * 179.72697 * 20 19 17
23 23 N 1.31616 * 120.00037 * 179.97438 * 22 20 19
24 24 Si 1.86799 * 119.99738 * 359.97438 * 22 20 19
25 25 H 1.48497 * 109.47299 * 90.00349 * 24 22 20
26 26 H 1.48506 * 109.47131 * 210.00181 * 24 22 20
27 27 H 1.48500 * 109.47526 * 329.99815 * 24 22 20
28 28 C 1.46922 * 120.63366 * 175.71162 * 13 11 3
29 29 H 1.08997 * 109.47418 * 65.12472 * 1 2 3
30 30 H 1.09002 * 109.47217 * 185.12560 * 1 2 3
31 31 H 1.09000 * 109.47285 * 305.12679 * 1 2 3
32 32 H 1.08996 * 109.46911 * 240.00305 * 2 1 3
33 33 H 1.09001 * 109.46969 * 119.99650 * 2 1 3
34 34 H 1.09006 * 110.01660 * 33.02190 * 6 5 3
35 35 H 1.09002 * 110.48027 * 335.78226 * 7 6 5
36 36 H 1.09001 * 110.48876 * 98.42346 * 7 6 5
37 37 H 1.08997 * 110.75728 * 279.62764 * 8 7 6
38 38 H 1.08997 * 110.91281 * 156.32757 * 8 7 6
39 39 H 1.08993 * 110.48628 * 203.37656 * 9 8 7
40 40 H 1.09010 * 110.48557 * 80.73458 * 9 8 7
41 41 H 1.09003 * 110.02886 * 238.56957 * 10 6 5
42 42 H 1.08997 * 110.03338 * 359.97438 * 10 6 5
43 43 H 1.08994 * 109.58985 * 246.19546 * 14 13 11
44 44 H 1.08997 * 109.59178 * 6.48463 * 14 13 11
45 45 H 1.08995 * 109.49688 * 174.58889 * 15 14 13
46 46 H 1.09001 * 109.49554 * 294.68372 * 15 14 13
47 47 H 1.09005 * 109.45584 * 178.61571 * 16 15 14
48 48 H 1.09004 * 109.45943 * 58.65860 * 16 15 14
49 49 H 0.97000 * 120.00542 * 264.88686 * 19 17 16
50 50 H 0.96998 * 120.00001 * 179.97438 * 23 22 20
51 51 H 1.09004 * 109.58792 * 113.79857 * 28 13 11
52 52 H 1.09002 * 109.70286 * 353.44623 * 28 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6003 1.9834 0.8381
5 8 1.6692 2.0788 -1.2246
6 6 1.3911 3.4744 -1.0935
7 6 -0.0959 3.6861 -0.7414
8 6 -0.4920 4.9655 -1.5193
9 6 0.2814 4.8085 -2.8521
10 6 1.6310 4.1880 -2.4355
11 6 3.5411 1.4446 0.1329
12 8 4.2313 1.8164 -0.7926
13 7 4.1167 1.0334 1.2800
14 6 3.2941 0.6698 2.4419
15 6 3.6893 -0.7360 2.9053
16 6 5.1969 -0.7782 3.1646
17 6 5.9482 -0.4681 1.8679
18 1 5.6710 -1.1942 1.1037
19 7 7.3913 -0.5396 2.1098
20 6 8.0387 -1.7442 2.0383
21 1 7.4845 -2.6421 1.8080
22 6 9.4070 -1.8112 2.2619
23 7 10.0291 -2.9691 2.1936
24 14 10.3655 -0.2580 2.6597
25 1 10.3864 -0.0522 4.1302
26 1 11.7570 -0.3931 2.1590
27 1 9.7152 0.9061 2.0061
28 6 5.5786 0.9406 1.3928
29 1 -0.3634 0.4323 -0.9323
30 1 -0.3634 -1.0236 0.0918
31 1 -0.3634 0.5913 0.8405
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 2.0243 3.9100 -0.3205
35 1 -0.6916 2.8366 -1.0756
36 1 -0.2160 3.8391 0.3311
37 1 -0.1655 5.8584 -0.9862
38 1 -1.5669 4.9953 -1.6977
39 1 0.4366 5.7806 -3.3199
40 1 -0.2534 4.1402 -3.5271
41 1 2.3799 4.9705 -2.3136
42 1 1.9600 3.4699 -3.1867
43 1 3.4660 1.3822 3.2487
44 1 2.2407 0.6818 2.1620
45 1 3.1551 -0.9799 3.8235
46 1 3.4328 -1.4596 2.1315
47 1 5.4769 -1.7706 3.5180
48 1 5.4562 -0.0371 3.9207
49 1 7.8890 0.2669 2.3167
50 1 10.9853 -3.0158 2.3495
51 1 5.9369 1.6753 2.1140
52 1 6.0349 1.1300 0.4211
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001000347507.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:00:37
Heat of formation + Delta-G solvation = -103.330502 kcal
Electronic energy + Delta-G solvation = -29218.332636 eV
Core-core repulsion = 25409.571823 eV
Total energy + Delta-G solvation = -3808.760813 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-41.66797 -39.92361 -38.67331 -37.14339 -36.40903 -34.45615 -33.68012 -32.95515
-30.76475 -29.64142 -29.03043 -27.92654 -26.20378 -25.30891 -23.37556 -22.87270
-21.87816 -21.53862 -21.31309 -20.33915 -19.53334 -18.61059 -18.08131 -16.97035
-16.88423 -16.62304 -16.30601 -15.83701 -15.65082 -15.49011 -15.26321 -15.06402
-14.80207 -14.70550 -14.49523 -14.25893 -14.05393 -13.84589 -13.51020 -13.22550
-13.12440 -13.00410 -12.83873 -12.66890 -12.53378 -12.19381 -12.10164 -12.02219
-11.98691 -11.88491 -11.82828 -11.82241 -11.76980 -11.67637 -11.53990 -11.43782
-11.22900 -10.97166 -10.22281 -9.74693 -9.34216 -8.05631 -5.40313 1.35455
1.39107 1.45195 1.46954 1.82025 2.45446 2.64527 3.25320 3.36870
3.53990 3.61132 3.67656 3.85571 3.86650 3.97566 3.99897 4.03202
4.06807 4.15179 4.24965 4.31386 4.37143 4.51998 4.52906 4.53897
4.59078 4.69846 4.71517 4.77155 4.78804 4.80843 4.90010 4.93846
5.03038 5.04519 5.08314 5.14029 5.15323 5.20863 5.25427 5.28313
5.38627 5.41495 5.44342 5.49183 5.52994 5.73409 6.14550 6.17526
6.40550 7.02455 7.09835 7.77191 7.96848 9.15739
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.020024 B = 0.002863 C = 0.002658
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1398.000797 B = 9778.737101 C =10531.141423
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.123 4.123
3 C 0.086 3.914
4 H 0.117 0.883
5 O -0.365 6.365
6 C 0.076 3.924
7 C -0.141 4.141
8 C -0.119 4.119
9 C -0.119 4.119
10 C -0.127 4.127
11 C 0.480 3.520
12 O -0.580 6.580
13 N -0.601 5.601
14 C 0.097 3.903
15 C -0.126 4.126
16 C -0.129 4.129
17 C 0.170 3.830
18 H 0.029 0.971
19 N -0.750 5.750
20 C -0.229 4.229
21 H 0.055 0.945
22 C -0.063 4.063
23 N -0.983 5.983
24 Si 0.956 3.044
25 H -0.272 1.272
26 H -0.297 1.297
27 H -0.256 1.256
28 C 0.114 3.886
29 H 0.053 0.947
30 H 0.069 0.931
31 H 0.076 0.924
32 H 0.052 0.948
33 H 0.099 0.901
34 H 0.053 0.947
35 H 0.080 0.920
36 H 0.083 0.917
37 H 0.073 0.927
38 H 0.083 0.917
39 H 0.076 0.924
40 H 0.067 0.933
41 H 0.066 0.934
42 H 0.056 0.944
43 H 0.093 0.907
44 H 0.118 0.882
45 H 0.108 0.892
46 H 0.061 0.939
47 H 0.044 0.956
48 H 0.067 0.933
49 H 0.366 0.634
50 H 0.258 0.742
51 H 0.079 0.921
52 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.979 16.260 -0.125 33.229
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.161 4.161
3 C 0.025 3.975
4 H 0.135 0.865
5 O -0.283 6.283
6 C 0.019 3.981
7 C -0.178 4.178
8 C -0.157 4.157
9 C -0.157 4.157
10 C -0.164 4.164
11 C 0.269 3.731
12 O -0.459 6.459
13 N -0.335 5.335
14 C -0.024 4.024
15 C -0.165 4.165
16 C -0.169 4.169
17 C 0.061 3.939
18 H 0.047 0.953
19 N -0.393 5.393
20 C -0.360 4.360
21 H 0.073 0.927
22 C -0.254 4.254
23 N -0.633 5.633
24 Si 0.783 3.217
25 H -0.198 1.198
26 H -0.224 1.224
27 H -0.181 1.181
28 C -0.010 4.010
29 H 0.072 0.928
30 H 0.088 0.912
31 H 0.095 0.905
32 H 0.071 0.929
33 H 0.118 0.882
34 H 0.071 0.929
35 H 0.098 0.902
36 H 0.102 0.898
37 H 0.092 0.908
38 H 0.102 0.898
39 H 0.094 0.906
40 H 0.086 0.914
41 H 0.085 0.915
42 H 0.075 0.925
43 H 0.111 0.889
44 H 0.136 0.864
45 H 0.126 0.874
46 H 0.080 0.920
47 H 0.063 0.937
48 H 0.086 0.914
49 H 0.199 0.801
50 H 0.067 0.933
51 H 0.097 0.903
52 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -28.619 16.147 -0.845 32.871
hybrid contribution 1.989 0.270 0.034 2.007
sum -26.631 16.417 -0.810 31.295
Atomic orbital electron populations
1.21694 0.92187 1.03019 1.02838 1.21795 0.98988 0.91716 1.03593
1.22216 0.87808 0.97643 0.89856 0.86544 1.88063 1.87015 1.22695
1.30522 1.23059 0.96518 0.80675 0.97863 1.22921 0.94229 0.99364
1.01331 1.22441 1.00760 0.97267 0.95192 1.22337 0.94352 1.00859
0.98143 1.22208 0.99009 0.98941 0.96273 1.22269 0.92960 0.76453
0.81395 1.90682 1.66022 1.48794 1.40436 1.48223 1.06339 1.65342
1.13620 1.22278 0.95890 0.96860 0.87393 1.21928 0.94917 0.96573
1.03043 1.22048 0.95513 1.01485 0.97825 1.20614 0.82873 0.94502
0.95876 0.95275 1.42664 1.04761 1.05821 1.86105 1.18940 0.91372
0.86650 1.39015 0.92747 1.25499 0.97492 0.99854 1.02598 1.69879
1.09440 1.25696 1.58285 0.85401 0.77673 0.80109 0.78538 1.19784
1.22395 1.18087 1.21618 0.80903 0.96993 1.01516 0.92769 0.91208
0.90501 0.92903 0.88234 0.92875 0.90152 0.89825 0.90784 0.89791
0.90561 0.91423 0.91494 0.92537 0.88892 0.86438 0.87364 0.92019
0.93729 0.91385 0.80103 0.93281 0.90321 0.92213
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.62 9.76 71.98 0.70 -0.92 16
2 C -0.12 -2.13 5.19 30.60 0.16 -1.97 16
3 C 0.09 1.77 1.49 29.85 0.04 1.81 16
4 H 0.12 1.56 6.96 -2.38 -0.02 1.54 16
5 O -0.37 -8.86 8.73 -130.05 -1.14 -9.99 16
6 C 0.08 1.48 3.16 31.32 0.10 1.58 16
7 C -0.14 -1.73 6.51 31.67 0.21 -1.53 16
8 C -0.12 -1.26 6.91 31.89 0.22 -1.04 16
9 C -0.12 -1.64 6.83 31.67 0.22 -1.42 16
10 C -0.13 -2.52 6.61 31.32 0.21 -2.32 16
11 C 0.48 14.27 7.06 87.66 0.62 14.89 16
12 O -0.58 -23.50 15.95 15.87 0.25 -23.25 16
13 N -0.60 -15.96 2.97 -818.90 -2.43 -18.40 16
14 C 0.10 1.60 5.47 86.37 0.47 2.08 16
15 C -0.13 -2.49 5.90 30.68 0.18 -2.31 16
16 C -0.13 -3.94 5.47 30.62 0.17 -3.77 16
17 C 0.17 6.55 2.92 45.07 0.13 6.68 16
18 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16
19 N -0.75 -35.63 4.93 -322.57 -1.59 -37.22 16
20 C -0.23 -13.27 10.41 84.03 0.88 -12.40 16
21 H 0.05 3.47 8.06 -2.91 -0.02 3.45 16
22 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16
23 N -0.98 -63.89 13.97 21.65 0.30 -63.59 16
24 Si 0.96 46.27 27.73 68.60 1.90 48.17 16
25 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16
26 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16
27 H -0.26 -11.38 6.52 99.48 0.65 -10.73 16
28 C 0.11 3.84 5.89 86.36 0.51 4.35 16
29 H 0.05 0.74 7.97 -2.39 -0.02 0.72 16
30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16
31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16
32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16
33 H 0.10 1.46 5.11 -2.39 -0.01 1.44 16
34 H 0.05 1.08 7.87 -2.38 -0.02 1.06 16
35 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16
36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16
37 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16
38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16
39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
40 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16
41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
42 H 0.06 1.38 7.95 -2.39 -0.02 1.36 16
43 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
44 H 0.12 1.19 4.54 -2.39 -0.01 1.18 16
45 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16
46 H 0.06 1.31 7.54 -2.39 -0.02 1.29 16
47 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16
48 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16
49 H 0.37 16.63 5.66 -92.71 -0.52 16.10 16
50 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16
51 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16
52 H 0.06 2.41 7.04 -2.39 -0.02 2.40 16
Total: -1.00 -79.21 397.25 2.88 -76.34
By element:
Atomic # 1 Polarization: 27.23 SS G_CDS: 0.30 Total: 27.53 kcal
Atomic # 6 Polarization: -4.86 SS G_CDS: 5.28 Total: 0.41 kcal
Atomic # 7 Polarization: -115.49 SS G_CDS: -3.72 Total: -119.21 kcal
Atomic # 8 Polarization: -32.35 SS G_CDS: -0.88 Total: -33.24 kcal
Atomic # 14 Polarization: 46.27 SS G_CDS: 1.90 Total: 48.17 kcal
Total: -79.21 2.88 -76.34 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001000347507.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.995 kcal
(2) G-P(sol) polarization free energy of solvation -79.212 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.207 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.335 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.331 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds