Wall clock time and date at job start Tue Mar 31 2020 14:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46986 * 2 1 4 4 C 1.52998 * 109.46939 * 120.00002 * 2 1 3 5 5 H 1.09001 * 109.49128 * 59.97301 * 4 2 1 6 6 C 1.53096 * 109.47608 * 180.02562 * 4 2 1 7 7 C 1.53182 * 109.16176 * 177.59429 * 6 4 2 8 8 H 1.08995 * 109.54157 * 183.06317 * 7 6 4 9 9 C 1.52998 * 109.54706 * 62.88350 * 7 6 4 10 10 C 1.50693 * 109.47291 * 175.18130 * 9 7 6 11 11 O 1.21279 * 120.00143 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00129 * 180.02562 * 10 9 7 13 13 C 1.46505 * 120.00054 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.84576 * 336.18813 * 13 12 10 15 15 C 1.53780 * 113.69419 * 107.46236 * 13 12 10 16 16 C 1.53778 * 87.08092 * 139.99168 * 15 13 12 17 17 H 1.08998 * 113.68905 * 220.01231 * 16 15 13 18 18 N 1.46499 * 113.61557 * 89.11527 * 16 15 13 19 19 C 1.36939 * 119.99933 * 107.77738 * 18 16 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 16 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 16 22 22 N 1.31612 * 120.00054 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99751 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47517 * 89.99708 * 23 21 19 25 25 H 1.48502 * 109.46736 * 209.99481 * 23 21 19 26 26 H 1.48496 * 109.47375 * 329.99177 * 23 21 19 27 27 C 1.53783 * 113.61103 * 205.00032 * 13 12 10 28 28 C 1.53182 * 109.10376 * 302.97169 * 7 6 4 29 29 C 1.53277 * 109.06615 * 56.94475 * 28 7 6 30 30 O 1.42897 * 109.48164 * 299.93900 * 4 2 1 31 31 H 1.09002 * 109.46978 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47121 * 299.99823 * 1 2 3 33 33 H 1.09000 * 109.46861 * 60.00132 * 1 2 3 34 34 H 1.08996 * 109.47121 * 240.00177 * 2 1 3 35 35 H 1.09004 * 109.47270 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47212 * 299.99652 * 3 2 1 37 37 H 1.09004 * 109.47273 * 59.99936 * 3 2 1 38 38 H 1.08993 * 109.52407 * 57.68457 * 6 4 2 39 39 H 1.09002 * 109.57562 * 297.52156 * 6 4 2 40 40 H 1.08997 * 109.47150 * 55.17725 * 9 7 6 41 41 H 1.09008 * 109.46930 * 295.18226 * 9 7 6 42 42 H 0.97004 * 119.99851 * 359.97438 * 12 10 9 43 43 H 1.08998 * 113.61038 * 25.44202 * 15 13 12 44 44 H 1.08998 * 113.61309 * 254.53784 * 15 13 12 45 45 H 0.97001 * 119.99790 * 287.49711 * 18 16 15 46 46 H 0.96998 * 120.00381 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.61551 * 105.38348 * 27 13 12 48 48 H 1.09004 * 113.69000 * 334.48484 * 27 13 12 49 49 H 1.09004 * 109.51854 * 176.93194 * 28 7 6 50 50 H 1.08997 * 109.52236 * 297.11783 * 28 7 6 51 51 H 1.08999 * 109.45926 * 182.44829 * 29 28 7 52 52 H 1.09000 * 109.47190 * 62.44401 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6764 -1.7488 1.2498 6 6 3.5710 -0.7208 1.2497 7 6 4.0736 -1.3911 2.5321 8 1 5.1621 -1.3457 2.5647 9 6 3.6213 -2.8524 2.5570 10 6 4.2146 -3.5415 3.7587 11 8 4.9294 -2.9247 4.5200 12 7 3.9519 -4.8436 3.9868 13 6 4.5284 -5.5134 5.1554 14 1 5.4351 -5.0283 5.5167 15 6 3.5052 -5.8113 6.2641 16 6 4.2174 -7.1615 6.4499 17 1 3.5373 -7.9948 6.6264 18 7 5.3218 -7.1151 7.4113 19 6 5.1867 -7.7077 8.6384 20 1 4.2644 -8.2055 8.8990 21 6 6.2352 -7.6687 9.5472 22 7 6.1052 -8.2379 10.7268 23 14 7.8303 -6.8072 9.0966 24 1 7.7539 -5.3805 9.5015 25 1 8.9623 -7.4616 9.8006 26 1 8.0428 -6.8947 7.6295 27 6 4.6698 -7.0353 4.9855 28 6 3.4934 -0.6543 3.7434 29 6 1.9638 -0.6568 3.6455 30 8 1.5650 -0.0470 2.4161 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.1301 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 3.9349 0.3058 1.2085 39 1 3.9366 -1.2720 0.3834 40 1 3.9574 -3.3523 1.6487 41 1 2.5335 -2.8952 2.6140 42 1 3.3806 -5.3371 3.3777 43 1 2.4819 -5.9039 5.9004 44 1 3.5910 -5.1502 7.1264 45 1 6.1502 -6.6680 7.1772 46 1 6.8377 -8.2104 11.3620 47 1 5.6957 -7.3622 4.8157 48 1 3.9654 -7.4637 4.2725 49 1 3.8027 -1.1587 4.6589 50 1 3.8559 0.3736 3.7524 51 1 1.5455 -0.0966 4.4817 52 1 1.5993 -1.6836 3.6773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020894200.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:31 Heat of formation + Delta-G solvation = -70.222495 kcal Electronic energy + Delta-G solvation = -28364.526411 eV Core-core repulsion = 24557.201269 eV Total energy + Delta-G solvation = -3807.325142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.74085 -39.60094 -38.15501 -35.63858 -34.64978 -34.14567 -32.69170 -30.44464 -30.32504 -28.82421 -27.40762 -25.26088 -25.18925 -24.21886 -23.80286 -22.52550 -20.85475 -20.51235 -19.37333 -18.68869 -17.69400 -17.09221 -16.60188 -16.25827 -16.15857 -15.67889 -15.06922 -14.90411 -14.66705 -14.42368 -14.24282 -13.97383 -13.90386 -13.37625 -13.27481 -13.06566 -12.74176 -12.53837 -12.30303 -12.21847 -12.14950 -12.08460 -11.98095 -11.83845 -11.70650 -11.36196 -11.16071 -11.01010 -10.97185 -10.86190 -10.69267 -10.41452 -10.37112 -10.30458 -9.91483 -9.68395 -9.59014 -9.45842 -8.97131 -8.79732 -7.33446 -5.81319 -3.18148 2.63880 3.22859 3.36887 3.40883 3.45237 3.53250 4.25118 4.39074 4.50565 4.56122 4.62249 4.62807 4.71282 4.85722 4.88720 4.94996 4.99932 5.03998 5.10682 5.18115 5.19410 5.22735 5.32015 5.37777 5.38438 5.40663 5.43314 5.54499 5.59183 5.66094 5.70611 5.73843 5.75554 5.81126 5.91521 5.95883 5.97663 6.03772 6.06443 6.12568 6.14989 6.24773 6.47513 6.55297 6.64977 6.86317 7.03003 7.56199 7.95042 8.27692 8.37864 9.15080 9.87583 10.05845 11.36473 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.026663 B = 0.002252 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.877581 B =12430.639934 C =12693.632642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.146 4.146 4 C 0.093 3.907 5 H 0.056 0.944 6 C -0.148 4.148 7 C -0.072 4.072 8 H 0.082 0.918 9 C -0.144 4.144 10 C 0.509 3.491 11 O -0.536 6.536 12 N -0.719 5.719 13 C 0.122 3.878 14 H 0.109 0.891 15 C -0.181 4.181 16 C 0.177 3.823 17 H 0.077 0.923 18 N -0.729 5.729 19 C -0.249 4.249 20 H 0.093 0.907 21 C 0.008 3.992 22 N -0.930 5.930 23 Si 0.883 3.117 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.166 4.166 28 C -0.156 4.156 29 C 0.059 3.941 30 O -0.375 6.375 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.396 0.604 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.363 0.637 46 H 0.261 0.739 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.095 0.905 50 H 0.068 0.932 51 H 0.092 0.908 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 15.448 -25.805 31.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.203 4.203 4 C 0.036 3.964 5 H 0.074 0.926 6 C -0.185 4.185 7 C -0.091 4.091 8 H 0.101 0.899 9 C -0.184 4.184 10 C 0.295 3.705 11 O -0.413 6.413 12 N -0.369 5.369 13 C 0.018 3.982 14 H 0.127 0.873 15 C -0.224 4.224 16 C 0.064 3.936 17 H 0.095 0.905 18 N -0.369 5.369 19 C -0.379 4.379 20 H 0.110 0.890 21 C -0.189 4.189 22 N -0.577 5.577 23 Si 0.713 3.287 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.203 1.203 27 C -0.206 4.206 28 C -0.194 4.194 29 C -0.017 4.017 30 O -0.294 6.294 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.230 0.770 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.196 0.804 46 H 0.071 0.929 47 H 0.090 0.910 48 H 0.101 0.899 49 H 0.113 0.887 50 H 0.087 0.913 51 H 0.110 0.890 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.985 15.914 -25.010 31.281 hybrid contribution 1.113 0.049 -0.489 1.217 sum -8.872 15.963 -25.499 31.365 Atomic orbital electron populations 1.21776 0.94675 1.01656 1.02114 1.21158 0.96525 0.97090 0.95869 1.21827 1.00892 0.95611 1.01991 1.22125 0.92802 0.95415 0.86085 0.92564 1.22343 0.96308 1.02138 0.97759 1.20913 1.01356 0.92095 0.94708 0.89926 1.21896 1.02233 0.96904 0.97392 1.20651 0.80929 0.82167 0.86762 1.90688 1.37680 1.64602 1.48350 1.46158 1.51500 1.10811 1.28458 1.22641 0.98208 0.91951 0.85445 0.87299 1.24266 0.97742 1.01987 0.98369 1.20856 0.90559 0.94983 0.87172 0.90531 1.42539 1.13097 1.66633 1.14682 1.19087 1.01207 1.28491 0.89100 0.88959 1.24673 0.97921 1.00265 0.96004 1.69692 1.32616 1.48650 1.06790 0.86582 0.84623 0.79848 0.77689 1.20863 1.21591 1.20314 1.23918 1.02260 0.94422 0.99989 1.22351 0.95580 1.01406 1.00022 1.22658 0.94636 0.97815 0.86601 1.87903 1.74600 1.53604 1.13281 0.92996 0.91724 0.92906 0.90342 0.92592 0.93077 0.91737 0.90299 0.91014 0.88958 0.89038 0.76993 0.90877 0.90886 0.80390 0.92940 0.91042 0.89917 0.88699 0.91278 0.88968 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.05 37.16 0.34 -0.61 16 2 C -0.09 -0.58 2.81 -90.62 -0.25 -0.83 16 3 C -0.15 -0.98 8.70 37.16 0.32 -0.66 16 4 C 0.09 0.71 2.10 -26.68 -0.06 0.65 16 5 H 0.06 0.40 6.72 -51.93 -0.35 0.05 16 6 C -0.15 -1.09 4.63 -26.59 -0.12 -1.21 16 7 C -0.07 -0.66 2.33 -90.43 -0.21 -0.87 16 8 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 9 C -0.14 -1.22 4.61 -27.89 -0.13 -1.35 16 10 C 0.51 6.34 7.53 -10.99 -0.08 6.26 16 11 O -0.54 -8.98 13.60 5.56 0.08 -8.90 16 12 N -0.72 -8.30 5.36 -53.02 -0.28 -8.59 16 13 C 0.12 1.83 4.11 -67.11 -0.28 1.55 16 14 H 0.11 1.97 7.46 -51.93 -0.39 1.58 16 15 C -0.18 -2.96 7.68 -25.92 -0.20 -3.16 16 16 C 0.18 3.25 4.56 -67.12 -0.31 2.94 16 17 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 18 N -0.73 -17.07 5.11 -52.64 -0.27 -17.34 16 19 C -0.25 -6.97 10.45 -15.06 -0.16 -7.13 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 22 N -0.93 -29.14 13.97 55.49 0.78 -28.37 16 23 Si 0.88 22.35 27.74 -169.99 -4.71 17.63 16 24 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 27 C -0.17 -2.39 7.58 -25.91 -0.20 -2.58 16 28 C -0.16 -1.62 5.42 -26.49 -0.14 -1.77 16 29 C 0.06 0.56 6.57 37.30 0.25 0.80 16 30 O -0.37 -3.57 9.06 -35.23 -0.32 -3.89 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.36 6.38 -51.93 -0.33 0.03 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.52 7.68 -51.93 -0.40 0.12 16 38 H 0.08 0.61 6.31 -51.93 -0.33 0.28 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.67 5.03 -51.92 -0.26 0.41 16 42 H 0.40 3.27 8.73 -40.82 -0.36 2.91 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.36 8.48 5.76 -40.82 -0.24 8.25 16 46 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.08 0.94 8.12 -51.93 -0.42 0.51 16 49 H 0.09 1.23 5.94 -51.93 -0.31 0.92 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.05 0.43 6.49 -51.93 -0.34 0.09 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -32.84 393.48 -9.32 -42.16 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -9.19 Total: 9.22 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.33 Total: -7.85 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.22 Total: -54.29 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.24 Total: -12.80 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.84 -9.32 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020894200.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.065 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds