Wall clock time and date at job start Tue Mar 31 2020 14:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46986 * 2 1 4 4 C 1.52998 * 109.46939 * 120.00002 * 2 1 3 5 5 H 1.09001 * 109.49128 * 59.97301 * 4 2 1 6 6 C 1.53096 * 109.47608 * 180.02562 * 4 2 1 7 7 C 1.53182 * 109.16176 * 177.59429 * 6 4 2 8 8 H 1.08995 * 109.54157 * 183.06317 * 7 6 4 9 9 C 1.52998 * 109.54706 * 62.88350 * 7 6 4 10 10 C 1.50693 * 109.47291 * 175.18130 * 9 7 6 11 11 O 1.21279 * 120.00143 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00129 * 180.02562 * 10 9 7 13 13 C 1.46505 * 120.00054 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.84576 * 336.18813 * 13 12 10 15 15 C 1.53780 * 113.69419 * 107.46236 * 13 12 10 16 16 C 1.53778 * 87.08092 * 139.99168 * 15 13 12 17 17 H 1.08998 * 113.68905 * 220.01231 * 16 15 13 18 18 N 1.46499 * 113.61557 * 89.11527 * 16 15 13 19 19 C 1.36939 * 119.99933 * 107.77738 * 18 16 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 16 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 16 22 22 N 1.31612 * 120.00054 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99751 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47517 * 89.99708 * 23 21 19 25 25 H 1.48502 * 109.46736 * 209.99481 * 23 21 19 26 26 H 1.48496 * 109.47375 * 329.99177 * 23 21 19 27 27 C 1.53783 * 113.61103 * 205.00032 * 13 12 10 28 28 C 1.53182 * 109.10376 * 302.97169 * 7 6 4 29 29 C 1.53277 * 109.06615 * 56.94475 * 28 7 6 30 30 O 1.42897 * 109.48164 * 299.93900 * 4 2 1 31 31 H 1.09002 * 109.46978 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47121 * 299.99823 * 1 2 3 33 33 H 1.09000 * 109.46861 * 60.00132 * 1 2 3 34 34 H 1.08996 * 109.47121 * 240.00177 * 2 1 3 35 35 H 1.09004 * 109.47270 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47212 * 299.99652 * 3 2 1 37 37 H 1.09004 * 109.47273 * 59.99936 * 3 2 1 38 38 H 1.08993 * 109.52407 * 57.68457 * 6 4 2 39 39 H 1.09002 * 109.57562 * 297.52156 * 6 4 2 40 40 H 1.08997 * 109.47150 * 55.17725 * 9 7 6 41 41 H 1.09008 * 109.46930 * 295.18226 * 9 7 6 42 42 H 0.97004 * 119.99851 * 359.97438 * 12 10 9 43 43 H 1.08998 * 113.61038 * 25.44202 * 15 13 12 44 44 H 1.08998 * 113.61309 * 254.53784 * 15 13 12 45 45 H 0.97001 * 119.99790 * 287.49711 * 18 16 15 46 46 H 0.96998 * 120.00381 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.61551 * 105.38348 * 27 13 12 48 48 H 1.09004 * 113.69000 * 334.48484 * 27 13 12 49 49 H 1.09004 * 109.51854 * 176.93194 * 28 7 6 50 50 H 1.08997 * 109.52236 * 297.11783 * 28 7 6 51 51 H 1.08999 * 109.45926 * 182.44829 * 29 28 7 52 52 H 1.09000 * 109.47190 * 62.44401 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6764 -1.7488 1.2498 6 6 3.5710 -0.7208 1.2497 7 6 4.0736 -1.3911 2.5321 8 1 5.1621 -1.3457 2.5647 9 6 3.6213 -2.8524 2.5570 10 6 4.2146 -3.5415 3.7587 11 8 4.9294 -2.9247 4.5200 12 7 3.9519 -4.8436 3.9868 13 6 4.5284 -5.5134 5.1554 14 1 5.4351 -5.0283 5.5167 15 6 3.5052 -5.8113 6.2641 16 6 4.2174 -7.1615 6.4499 17 1 3.5373 -7.9948 6.6264 18 7 5.3218 -7.1151 7.4113 19 6 5.1867 -7.7077 8.6384 20 1 4.2644 -8.2055 8.8990 21 6 6.2352 -7.6687 9.5472 22 7 6.1052 -8.2379 10.7268 23 14 7.8303 -6.8072 9.0966 24 1 7.7539 -5.3805 9.5015 25 1 8.9623 -7.4616 9.8006 26 1 8.0428 -6.8947 7.6295 27 6 4.6698 -7.0353 4.9855 28 6 3.4934 -0.6543 3.7434 29 6 1.9638 -0.6568 3.6455 30 8 1.5650 -0.0470 2.4161 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.1301 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 3.9349 0.3058 1.2085 39 1 3.9366 -1.2720 0.3834 40 1 3.9574 -3.3523 1.6487 41 1 2.5335 -2.8952 2.6140 42 1 3.3806 -5.3371 3.3777 43 1 2.4819 -5.9039 5.9004 44 1 3.5910 -5.1502 7.1264 45 1 6.1502 -6.6680 7.1772 46 1 6.8377 -8.2104 11.3620 47 1 5.6957 -7.3622 4.8157 48 1 3.9654 -7.4637 4.2725 49 1 3.8027 -1.1587 4.6589 50 1 3.8559 0.3736 3.7524 51 1 1.5455 -0.0966 4.4817 52 1 1.5993 -1.6836 3.6773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020894200.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:29 Heat of formation + Delta-G solvation = -92.299835 kcal Electronic energy + Delta-G solvation = -28365.483757 eV Core-core repulsion = 24557.201269 eV Total energy + Delta-G solvation = -3808.282488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.58101 -40.60620 -39.34906 -36.25891 -35.80500 -35.32318 -34.27465 -32.36144 -30.98393 -29.63897 -27.92650 -26.54166 -26.29345 -25.51343 -24.48658 -24.13985 -21.85375 -21.08547 -20.61023 -19.85287 -19.48647 -18.01837 -17.45270 -17.28205 -16.90129 -16.56125 -16.49503 -16.12934 -15.72283 -15.41463 -15.16690 -14.82215 -14.79263 -14.73890 -14.52547 -14.09942 -13.96196 -13.72484 -13.70304 -13.31007 -13.12557 -12.93569 -12.73845 -12.62897 -12.55644 -12.44138 -12.39842 -12.23200 -12.10950 -11.86730 -11.78197 -11.69592 -11.54858 -11.37005 -11.30372 -10.99000 -10.97100 -10.65289 -10.18475 -9.92624 -9.33697 -8.06582 -5.39744 1.33260 1.37002 1.42455 1.68388 2.27898 2.43465 2.90463 3.23838 3.46864 3.60165 3.67962 3.74491 3.80559 3.83251 3.96922 4.01090 4.16868 4.19647 4.24371 4.24773 4.30376 4.32012 4.45593 4.56384 4.63306 4.73628 4.77107 4.78868 4.82638 4.83946 4.90645 4.96747 4.98340 5.08274 5.10146 5.11019 5.15026 5.18612 5.23100 5.26856 5.29231 5.33749 5.35576 5.51938 5.59579 5.65721 5.76991 6.19067 6.38315 6.66438 7.03506 7.37062 7.80829 7.96823 9.14586 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.026663 B = 0.002252 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.877581 B =12430.639934 C =12693.632642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.145 4.145 4 C 0.088 3.912 5 H 0.070 0.930 6 C -0.140 4.140 7 C -0.071 4.071 8 H 0.064 0.936 9 C -0.133 4.133 10 C 0.503 3.497 11 O -0.585 6.585 12 N -0.704 5.704 13 C 0.129 3.871 14 H 0.075 0.925 15 C -0.171 4.171 16 C 0.150 3.850 17 H 0.075 0.925 18 N -0.738 5.738 19 C -0.230 4.230 20 H 0.064 0.936 21 C -0.061 4.061 22 N -0.980 5.980 23 Si 0.948 3.052 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.253 1.253 27 C -0.138 4.138 28 C -0.154 4.154 29 C 0.064 3.936 30 O -0.387 6.387 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.418 0.582 43 H 0.105 0.895 44 H 0.037 0.963 45 H 0.363 0.637 46 H 0.258 0.742 47 H 0.067 0.933 48 H 0.127 0.873 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.090 0.910 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.125 15.470 -30.069 35.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.202 4.202 4 C 0.031 3.969 5 H 0.088 0.912 6 C -0.177 4.177 7 C -0.090 4.090 8 H 0.082 0.918 9 C -0.172 4.172 10 C 0.292 3.708 11 O -0.465 6.465 12 N -0.356 5.356 13 C 0.023 3.977 14 H 0.093 0.907 15 C -0.213 4.213 16 C 0.040 3.960 17 H 0.093 0.907 18 N -0.379 5.379 19 C -0.361 4.361 20 H 0.082 0.918 21 C -0.253 4.253 22 N -0.630 5.630 23 Si 0.775 3.225 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.178 1.178 27 C -0.177 4.177 28 C -0.192 4.192 29 C -0.013 4.013 30 O -0.307 6.307 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.143 0.857 41 H 0.129 0.871 42 H 0.256 0.744 43 H 0.123 0.877 44 H 0.056 0.944 45 H 0.196 0.804 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.145 0.855 49 H 0.084 0.916 50 H 0.078 0.922 51 H 0.108 0.892 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.823 15.934 -29.374 35.126 hybrid contribution 1.222 0.072 0.813 1.469 sum -9.601 16.006 -28.561 34.119 Atomic orbital electron populations 1.21758 0.94759 1.01920 1.01656 1.21209 0.96435 0.96825 0.96068 1.21812 1.01001 0.95956 1.01481 1.22329 0.92786 0.96109 0.85673 0.91241 1.22295 0.96199 1.01893 0.97331 1.20880 1.00222 0.92902 0.95035 0.91798 1.21902 1.02998 0.95792 0.96492 1.21406 0.80091 0.82075 0.87260 1.90689 1.39920 1.65671 1.50240 1.45928 1.51359 1.10703 1.27597 1.22204 0.96535 0.92637 0.86291 0.90707 1.24150 0.99766 0.99515 0.97867 1.21220 0.89843 0.95994 0.88895 0.90666 1.42550 1.14661 1.66484 1.14179 1.19089 0.99702 1.26629 0.90694 0.91786 1.25434 1.01671 1.02067 0.96139 1.69855 1.33720 1.51259 1.08198 0.85520 0.80256 0.78038 0.78645 1.21294 1.21783 1.17817 1.23751 1.03119 0.93515 0.97326 1.22265 0.96630 1.00726 0.99551 1.22585 0.93589 0.98208 0.86908 1.87909 1.74741 1.54255 1.13750 0.92349 0.93477 0.92109 0.88343 0.92395 0.92218 0.93626 0.90991 0.88683 0.85658 0.87103 0.74424 0.87651 0.94417 0.80368 0.93294 0.91438 0.85466 0.91637 0.92182 0.89206 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.05 71.98 0.65 -0.88 16 2 C -0.09 -0.89 2.81 -10.79 -0.03 -0.92 16 3 C -0.15 -1.69 8.70 71.98 0.63 -1.06 16 4 C 0.09 1.07 2.10 30.63 0.06 1.14 16 5 H 0.07 0.68 6.72 -2.39 -0.02 0.67 16 6 C -0.14 -1.67 4.63 30.69 0.14 -1.53 16 7 C -0.07 -1.20 2.33 -10.67 -0.02 -1.22 16 8 H 0.06 1.32 7.96 -2.39 -0.02 1.30 16 9 C -0.13 -1.79 4.61 29.85 0.14 -1.65 16 10 C 0.50 11.51 7.53 87.65 0.66 12.17 16 11 O -0.59 -19.61 13.60 -3.03 -0.04 -19.65 16 12 N -0.70 -13.94 5.36 -440.03 -2.36 -16.30 16 13 C 0.13 3.61 4.11 45.52 0.19 3.80 16 14 H 0.07 2.68 7.46 -2.39 -0.02 2.67 16 15 C -0.17 -5.35 7.68 31.12 0.24 -5.11 16 16 C 0.15 5.33 4.56 45.52 0.21 5.54 16 17 H 0.08 2.67 8.10 -2.39 -0.02 2.65 16 18 N -0.74 -34.45 5.11 -320.45 -1.64 -36.09 16 19 C -0.23 -13.16 10.45 84.03 0.88 -12.28 16 20 H 0.06 3.95 8.06 -2.91 -0.02 3.93 16 21 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 22 N -0.98 -63.39 13.97 21.65 0.30 -63.09 16 23 Si 0.95 47.01 27.74 68.60 1.90 48.91 16 24 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 25 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.25 -11.43 6.52 99.48 0.65 -10.78 16 27 C -0.14 -3.50 7.58 31.12 0.24 -3.26 16 28 C -0.15 -3.20 5.42 30.75 0.17 -3.03 16 29 C 0.06 1.14 6.57 72.07 0.47 1.61 16 30 O -0.39 -6.80 9.06 -148.98 -1.35 -8.15 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.67 7.68 -2.39 -0.02 0.65 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.64 6.38 -2.38 -0.02 0.63 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.04 0.70 7.68 -2.38 -0.02 0.68 16 38 H 0.07 0.99 6.31 -2.39 -0.02 0.97 16 39 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.11 1.13 5.03 -2.38 -0.01 1.12 16 42 H 0.42 4.75 8.73 -92.70 -0.81 3.94 16 43 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.36 16.77 5.76 -92.71 -0.53 16.24 16 46 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 47 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.13 2.15 8.12 -2.38 -0.02 2.13 16 49 H 0.07 1.77 5.94 -2.38 -0.01 1.76 16 50 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.06 0.88 6.49 -2.39 -0.02 0.87 16 Total: -1.00 -75.84 393.48 1.41 -74.43 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -0.49 Total: 29.85 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 5.08 Total: -9.91 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -3.69 Total: -115.48 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -1.39 Total: -27.80 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.90 Total: 48.91 kcal Total: -75.84 1.41 -74.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020894200.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.872 kcal (2) G-P(sol) polarization free energy of solvation -75.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds