Wall clock time and date at job start Tue Mar 31 2020 14:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47380 * 2 1 4 4 C 1.53000 * 109.46876 * 239.99655 * 2 1 3 5 5 H 1.09003 * 109.48286 * 304.97518 * 4 2 1 6 6 C 1.53093 * 109.47728 * 184.94728 * 4 2 1 7 7 C 1.53184 * 109.16177 * 182.41001 * 6 4 2 8 8 H 1.09000 * 109.61381 * 297.06772 * 7 6 4 9 9 C 1.52995 * 109.54428 * 176.84483 * 7 6 4 10 10 C 1.50702 * 109.47376 * 175.44476 * 9 7 6 11 11 O 1.21281 * 119.99606 * 359.97438 * 10 9 7 12 12 N 1.34772 * 119.99948 * 180.02562 * 10 9 7 13 13 C 1.46502 * 119.99583 * 179.97438 * 12 10 9 14 14 H 1.08993 * 112.85096 * 332.84501 * 13 12 10 15 15 C 1.53783 * 113.61048 * 104.15276 * 13 12 10 16 16 C 1.53788 * 87.08069 * 89.11676 * 15 13 12 17 17 H 1.08999 * 113.69029 * 139.98798 * 16 15 13 18 18 N 1.46503 * 113.60979 * 270.88154 * 16 15 13 19 19 C 1.36941 * 119.99516 * 183.72726 * 18 16 15 20 20 H 1.08000 * 120.00337 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99443 * 180.02562 * 19 18 16 22 22 N 1.31612 * 120.00562 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99617 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47547 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47527 * 119.99643 * 23 21 19 26 26 H 1.48502 * 109.47052 * 240.00035 * 23 21 19 27 27 C 1.53781 * 113.61294 * 201.64889 * 13 12 10 28 28 C 1.53174 * 109.03530 * 56.97669 * 7 6 4 29 29 C 1.53088 * 109.16891 * 303.02183 * 28 7 6 30 30 O 1.42902 * 109.48015 * 65.00561 * 4 2 1 31 31 H 1.09006 * 109.46667 * 60.00003 * 1 2 3 32 32 H 1.09001 * 109.46989 * 300.00615 * 1 2 3 33 33 H 1.09002 * 109.47530 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46667 * 119.99997 * 2 1 3 35 35 H 1.09001 * 109.47562 * 59.99736 * 3 2 1 36 36 H 1.09001 * 109.47459 * 179.97438 * 3 2 1 37 37 H 1.09006 * 109.47219 * 299.99659 * 3 2 1 38 38 H 1.09000 * 109.52057 * 302.30916 * 6 4 2 39 39 H 1.09000 * 109.52682 * 62.50073 * 6 4 2 40 40 H 1.09008 * 109.47364 * 295.44464 * 9 7 6 41 41 H 1.09002 * 109.47158 * 55.44489 * 9 7 6 42 42 H 0.97001 * 120.00102 * 0.02562 * 12 10 9 43 43 H 1.09004 * 113.61189 * 203.66047 * 15 13 12 44 44 H 1.08998 * 113.61972 * 334.56677 * 15 13 12 45 45 H 0.96996 * 120.00302 * 3.72229 * 18 16 15 46 46 H 0.97001 * 120.00328 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.61684 * 25.43519 * 27 13 12 48 48 H 1.09001 * 113.61598 * 156.34239 * 27 13 12 49 49 H 1.09004 * 109.52117 * 183.11478 * 28 7 6 50 50 H 1.09009 * 109.57313 * 62.95829 * 28 7 6 51 51 H 1.09005 * 109.47844 * 297.62663 * 29 28 7 52 52 H 1.08991 * 109.49400 * 177.59962 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6058 -1.7201 -1.2950 6 6 3.5658 -0.8301 -1.1887 7 6 4.0734 -1.4991 -2.4699 8 1 3.6812 -2.5142 -2.5327 9 6 5.6027 -1.5414 -2.4539 10 6 6.0970 -2.2982 -3.6597 11 8 5.3040 -2.7589 -4.4534 12 7 7.4200 -2.4640 -3.8555 13 6 7.9005 -3.2002 -5.0274 14 1 7.1820 -3.9357 -5.3890 15 6 8.4678 -2.2950 -6.1335 16 6 9.8293 -2.4213 -5.4297 17 1 10.6691 -2.5276 -6.1163 18 7 10.0576 -1.3988 -4.4056 19 6 11.2588 -1.3421 -3.7506 20 1 12.0378 -2.0513 -3.9886 21 6 11.4749 -0.3737 -2.7799 22 7 10.5255 0.4903 -2.4894 23 14 13.1132 -0.2967 -1.8858 24 1 14.0045 -1.3712 -2.3920 25 1 13.7460 1.0253 -2.1248 26 1 12.8916 -0.4834 -0.4293 27 6 9.3239 -3.7586 -4.8631 28 6 3.5957 -0.6895 -3.6792 29 6 2.0687 -0.5860 -3.6435 30 8 1.6621 0.0165 -2.4132 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 0.8901 35 1 1.6767 1.9563 0.8899 36 1 3.1301 1.4424 0.0005 37 1 1.6768 1.9563 -0.8901 38 1 3.9989 0.1664 -1.1021 39 1 3.8544 -1.4300 -0.3256 40 1 5.9946 -0.5244 -2.4775 41 1 5.9429 -2.0409 -1.5468 42 1 8.0542 -2.0965 -3.2201 43 1 8.4447 -2.7492 -7.1242 44 1 8.0620 -1.2834 -6.1210 45 1 9.3579 -0.7621 -4.1916 46 1 10.6766 1.1673 -1.8113 47 1 9.6091 -3.9287 -3.8249 48 1 9.5348 -4.6129 -5.5065 49 1 3.9056 -1.1888 -4.5973 50 1 4.0294 0.3100 -3.6439 51 1 1.6350 -1.5831 -3.7208 52 1 1.7260 0.0251 -4.4784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022944721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:54 Heat of formation + Delta-G solvation = -77.456900 kcal Electronic energy + Delta-G solvation = -28727.280277 eV Core-core repulsion = 24919.641427 eV Total energy + Delta-G solvation = -3807.638850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.24284 -39.47478 -37.95338 -35.38603 -34.46936 -33.63763 -32.55936 -30.11566 -29.98501 -28.74576 -27.25768 -25.24366 -24.68301 -24.00759 -23.50630 -22.38364 -20.48029 -19.90259 -19.68924 -18.68285 -17.37115 -16.70369 -16.35054 -15.81995 -15.67227 -15.20465 -14.98300 -14.77023 -14.58826 -14.40925 -14.17024 -13.85479 -13.53399 -13.30600 -13.17984 -12.90779 -12.67925 -12.34454 -12.08936 -12.02724 -11.81209 -11.75270 -11.68255 -11.45421 -11.32002 -11.03954 -10.96721 -10.91160 -10.83757 -10.69603 -10.42292 -10.33734 -10.22129 -10.18956 -9.82960 -9.58291 -9.57774 -9.20818 -8.98036 -8.50843 -7.09728 -5.90653 -3.20198 2.98509 3.35312 3.42371 3.43829 3.57715 3.74727 4.47534 4.51998 4.65642 4.80415 4.82088 4.91351 5.04631 5.10408 5.13105 5.20824 5.27877 5.32295 5.39386 5.41925 5.47673 5.51109 5.55696 5.58999 5.61359 5.68529 5.73343 5.76460 5.79377 5.81614 5.90909 5.95708 5.96377 5.98266 6.09137 6.11875 6.19589 6.26763 6.30259 6.35058 6.40330 6.45459 6.59396 6.64959 6.84866 7.12528 7.24884 7.63035 8.02785 8.28642 8.64605 9.39813 9.95068 10.30214 11.31525 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.002947 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.648033 B = 9500.454403 C =11063.139721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.097 3.903 5 H 0.054 0.946 6 C -0.149 4.149 7 C -0.068 4.068 8 H 0.075 0.925 9 C -0.138 4.138 10 C 0.515 3.485 11 O -0.556 6.556 12 N -0.701 5.701 13 C 0.127 3.873 14 H 0.087 0.913 15 C -0.164 4.164 16 C 0.162 3.838 17 H 0.052 0.948 18 N -0.710 5.710 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.179 4.179 28 C -0.156 4.156 29 C 0.065 3.935 30 O -0.377 6.377 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.415 0.585 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.066 0.934 51 H 0.046 0.954 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.915 -3.538 2.154 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.202 4.202 4 C 0.040 3.960 5 H 0.072 0.928 6 C -0.186 4.186 7 C -0.087 4.087 8 H 0.094 0.906 9 C -0.178 4.178 10 C 0.302 3.698 11 O -0.435 6.435 12 N -0.354 5.354 13 C 0.022 3.978 14 H 0.105 0.895 15 C -0.203 4.203 16 C 0.051 3.949 17 H 0.070 0.930 18 N -0.351 5.351 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.221 4.221 28 C -0.193 4.193 29 C -0.012 4.012 30 O -0.297 6.297 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.254 0.746 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.219 0.781 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.112 0.888 50 H 0.084 0.916 51 H 0.065 0.935 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.373 -3.682 1.682 17.838 hybrid contribution 1.338 0.195 0.880 1.613 sum -16.035 -3.487 2.563 16.608 Atomic orbital electron populations 1.21793 0.94904 1.01482 1.02010 1.21156 0.96234 0.97274 0.95959 1.21791 1.01166 0.95419 1.01833 1.22069 0.93503 0.94455 0.86008 0.92794 1.22360 0.96143 1.02231 0.97915 1.20882 0.93392 0.99874 0.94525 0.90643 1.21728 0.96610 1.02273 0.97176 1.20633 0.82371 0.79717 0.87091 1.90594 1.55016 1.50605 1.47306 1.45983 1.07126 1.55700 1.26547 1.21676 0.95432 0.94185 0.86551 0.89524 1.23712 0.98279 1.00473 0.97833 1.21205 0.93935 0.88970 0.90801 0.93021 1.42261 1.15993 1.34341 1.42541 1.19282 0.91854 1.12033 1.14065 0.90905 1.24744 0.98044 0.98064 0.99865 1.69646 1.32523 1.20257 1.35551 0.86108 0.83282 0.77350 0.79361 1.20547 1.21839 1.21830 1.24059 0.95213 1.00102 1.02711 1.22362 0.95988 1.00771 1.00186 1.22537 0.94378 0.97869 0.86396 1.87880 1.78596 1.49673 1.13517 0.91886 0.92912 0.93094 0.90320 0.93191 0.92422 0.91719 0.90395 0.91031 0.88384 0.88992 0.74628 0.89634 0.91384 0.78075 0.93408 0.90743 0.90225 0.88835 0.91563 0.93530 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.09 37.16 0.34 -0.88 16 2 C -0.09 -0.80 2.75 -90.62 -0.25 -1.05 16 3 C -0.14 -1.37 8.75 37.15 0.33 -1.05 16 4 C 0.10 1.02 2.32 -26.68 -0.06 0.95 16 5 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 6 C -0.15 -1.59 4.51 -26.59 -0.12 -1.71 16 7 C -0.07 -0.83 1.92 -90.44 -0.17 -1.01 16 8 H 0.08 0.99 7.96 -51.93 -0.41 0.57 16 9 C -0.14 -1.85 5.18 -27.88 -0.14 -2.00 16 10 C 0.51 8.38 7.57 -10.99 -0.08 8.29 16 11 O -0.56 -10.11 13.62 5.56 0.08 -10.04 16 12 N -0.70 -11.87 4.94 -53.02 -0.26 -12.13 16 13 C 0.13 2.11 4.28 -67.12 -0.29 1.82 16 14 H 0.09 1.43 7.55 -51.93 -0.39 1.03 16 15 C -0.16 -2.72 7.57 -25.91 -0.20 -2.91 16 16 C 0.16 3.07 4.54 -67.11 -0.30 2.77 16 17 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 18 N -0.71 -16.43 4.41 -52.63 -0.23 -16.67 16 19 C -0.24 -6.26 9.99 -15.06 -0.15 -6.41 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 22 N -0.93 -26.09 13.06 55.49 0.72 -25.36 16 23 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C -0.18 -2.98 7.61 -25.92 -0.20 -3.18 16 28 C -0.16 -1.99 5.12 -26.60 -0.14 -2.12 16 29 C 0.06 0.74 6.84 37.20 0.25 0.99 16 30 O -0.38 -4.50 9.06 -35.23 -0.32 -4.82 16 31 H 0.06 0.59 7.82 -51.93 -0.41 0.19 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.56 6.52 -51.93 -0.34 0.22 16 37 H 0.06 0.68 7.56 -51.93 -0.39 0.29 16 38 H 0.08 0.88 6.46 -51.93 -0.34 0.54 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 1.35 8.14 -51.92 -0.42 0.92 16 41 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.42 7.62 7.18 -40.82 -0.29 7.33 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.38 9.38 6.97 -40.82 -0.28 9.10 16 46 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.09 1.38 6.04 -51.93 -0.31 1.06 16 50 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 51 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 399.99 15.07 6.03 6.03 Total: -1.00 -28.40 399.99 -9.77 -38.17 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -9.48 Total: 16.38 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.28 Total: -7.89 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.23 Total: -54.16 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.24 Total: -14.85 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.40 -9.77 -38.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022944721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.283 kcal (2) G-P(sol) polarization free energy of solvation -28.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds