Wall clock time and date at job start Tue Mar 31 2020 14:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47380 * 2 1 4 4 C 1.53000 * 109.46876 * 239.99655 * 2 1 3 5 5 H 1.09003 * 109.48286 * 304.97518 * 4 2 1 6 6 C 1.53093 * 109.47728 * 184.94728 * 4 2 1 7 7 C 1.53184 * 109.16177 * 182.41001 * 6 4 2 8 8 H 1.09000 * 109.61381 * 297.06772 * 7 6 4 9 9 C 1.52995 * 109.54428 * 176.84483 * 7 6 4 10 10 C 1.50702 * 109.47376 * 175.44476 * 9 7 6 11 11 O 1.21281 * 119.99606 * 359.97438 * 10 9 7 12 12 N 1.34772 * 119.99948 * 180.02562 * 10 9 7 13 13 C 1.46502 * 119.99583 * 179.97438 * 12 10 9 14 14 H 1.08993 * 112.85096 * 332.84501 * 13 12 10 15 15 C 1.53783 * 113.61048 * 104.15276 * 13 12 10 16 16 C 1.53788 * 87.08069 * 89.11676 * 15 13 12 17 17 H 1.08999 * 113.69029 * 139.98798 * 16 15 13 18 18 N 1.46503 * 113.60979 * 270.88154 * 16 15 13 19 19 C 1.36941 * 119.99516 * 183.72726 * 18 16 15 20 20 H 1.08000 * 120.00337 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99443 * 180.02562 * 19 18 16 22 22 N 1.31612 * 120.00562 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99617 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47547 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47527 * 119.99643 * 23 21 19 26 26 H 1.48502 * 109.47052 * 240.00035 * 23 21 19 27 27 C 1.53781 * 113.61294 * 201.64889 * 13 12 10 28 28 C 1.53174 * 109.03530 * 56.97669 * 7 6 4 29 29 C 1.53088 * 109.16891 * 303.02183 * 28 7 6 30 30 O 1.42902 * 109.48015 * 65.00561 * 4 2 1 31 31 H 1.09006 * 109.46667 * 60.00003 * 1 2 3 32 32 H 1.09001 * 109.46989 * 300.00615 * 1 2 3 33 33 H 1.09002 * 109.47530 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46667 * 119.99997 * 2 1 3 35 35 H 1.09001 * 109.47562 * 59.99736 * 3 2 1 36 36 H 1.09001 * 109.47459 * 179.97438 * 3 2 1 37 37 H 1.09006 * 109.47219 * 299.99659 * 3 2 1 38 38 H 1.09000 * 109.52057 * 302.30916 * 6 4 2 39 39 H 1.09000 * 109.52682 * 62.50073 * 6 4 2 40 40 H 1.09008 * 109.47364 * 295.44464 * 9 7 6 41 41 H 1.09002 * 109.47158 * 55.44489 * 9 7 6 42 42 H 0.97001 * 120.00102 * 0.02562 * 12 10 9 43 43 H 1.09004 * 113.61189 * 203.66047 * 15 13 12 44 44 H 1.08998 * 113.61972 * 334.56677 * 15 13 12 45 45 H 0.96996 * 120.00302 * 3.72229 * 18 16 15 46 46 H 0.97001 * 120.00328 * 180.02562 * 22 21 19 47 47 H 1.09000 * 113.61684 * 25.43519 * 27 13 12 48 48 H 1.09001 * 113.61598 * 156.34239 * 27 13 12 49 49 H 1.09004 * 109.52117 * 183.11478 * 28 7 6 50 50 H 1.09009 * 109.57313 * 62.95829 * 28 7 6 51 51 H 1.09005 * 109.47844 * 297.62663 * 29 28 7 52 52 H 1.08991 * 109.49400 * 177.59962 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6058 -1.7201 -1.2950 6 6 3.5658 -0.8301 -1.1887 7 6 4.0734 -1.4991 -2.4699 8 1 3.6812 -2.5142 -2.5327 9 6 5.6027 -1.5414 -2.4539 10 6 6.0970 -2.2982 -3.6597 11 8 5.3040 -2.7589 -4.4534 12 7 7.4200 -2.4640 -3.8555 13 6 7.9005 -3.2002 -5.0274 14 1 7.1820 -3.9357 -5.3890 15 6 8.4678 -2.2950 -6.1335 16 6 9.8293 -2.4213 -5.4297 17 1 10.6691 -2.5276 -6.1163 18 7 10.0576 -1.3988 -4.4056 19 6 11.2588 -1.3421 -3.7506 20 1 12.0378 -2.0513 -3.9886 21 6 11.4749 -0.3737 -2.7799 22 7 10.5255 0.4903 -2.4894 23 14 13.1132 -0.2967 -1.8858 24 1 14.0045 -1.3712 -2.3920 25 1 13.7460 1.0253 -2.1248 26 1 12.8916 -0.4834 -0.4293 27 6 9.3239 -3.7586 -4.8631 28 6 3.5957 -0.6895 -3.6792 29 6 2.0687 -0.5860 -3.6435 30 8 1.6621 0.0165 -2.4132 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 0.8901 35 1 1.6767 1.9563 0.8899 36 1 3.1301 1.4424 0.0005 37 1 1.6768 1.9563 -0.8901 38 1 3.9989 0.1664 -1.1021 39 1 3.8544 -1.4300 -0.3256 40 1 5.9946 -0.5244 -2.4775 41 1 5.9429 -2.0409 -1.5468 42 1 8.0542 -2.0965 -3.2201 43 1 8.4447 -2.7492 -7.1242 44 1 8.0620 -1.2834 -6.1210 45 1 9.3579 -0.7621 -4.1916 46 1 10.6766 1.1673 -1.8113 47 1 9.6091 -3.9287 -3.8249 48 1 9.5348 -4.6129 -5.5065 49 1 3.9056 -1.1888 -4.5973 50 1 4.0294 0.3100 -3.6439 51 1 1.6350 -1.5831 -3.7208 52 1 1.7260 0.0251 -4.4784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022944721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:53 Heat of formation + Delta-G solvation = -92.993806 kcal Electronic energy + Delta-G solvation = -28727.954008 eV Core-core repulsion = 24919.641427 eV Total energy + Delta-G solvation = -3808.312581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.42402 -40.59264 -39.29866 -36.21895 -35.55676 -35.34507 -34.04375 -31.81973 -30.99160 -29.84688 -27.97611 -26.70109 -26.21777 -25.24811 -24.48944 -23.77533 -21.62819 -20.88838 -20.69185 -20.11572 -19.20244 -18.04714 -17.25865 -17.01519 -16.71482 -16.61427 -16.37432 -15.91854 -15.84531 -15.62323 -15.24676 -15.14010 -14.97577 -14.68301 -14.17240 -14.00291 -13.75638 -13.40378 -13.28363 -13.18378 -13.09113 -12.86429 -12.80048 -12.75889 -12.53062 -12.51013 -12.30836 -12.09161 -11.95848 -11.83686 -11.72765 -11.71181 -11.51961 -11.33925 -11.11763 -11.07023 -10.83343 -10.70633 -10.26642 -9.88385 -8.98643 -7.93550 -5.21948 1.48967 1.51161 1.59306 1.67863 2.30568 2.57130 2.89798 3.39030 3.60010 3.68429 3.71342 3.80750 3.86968 3.95257 3.96988 4.08763 4.15523 4.21731 4.24384 4.30647 4.40668 4.41805 4.52063 4.54291 4.66313 4.71993 4.82036 4.83160 4.86037 4.87070 4.91850 4.96387 4.97672 4.99034 5.07577 5.07901 5.11896 5.17045 5.24159 5.25911 5.29180 5.39189 5.42166 5.51465 5.55918 5.58305 5.77400 6.29476 6.36913 6.65727 7.30657 7.35891 8.08849 8.33634 9.28906 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.002947 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.648033 B = 9500.454403 C =11063.139721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.143 4.143 4 C 0.094 3.906 5 H 0.059 0.941 6 C -0.143 4.143 7 C -0.063 4.063 8 H 0.070 0.930 9 C -0.133 4.133 10 C 0.512 3.488 11 O -0.575 6.575 12 N -0.705 5.705 13 C 0.126 3.874 14 H 0.093 0.907 15 C -0.151 4.151 16 C 0.145 3.855 17 H 0.053 0.947 18 N -0.719 5.719 19 C -0.238 4.238 20 H 0.075 0.925 21 C -0.066 4.066 22 N -0.961 5.961 23 Si 0.966 3.034 24 H -0.270 1.270 25 H -0.299 1.299 26 H -0.294 1.294 27 C -0.162 4.162 28 C -0.152 4.152 29 C 0.067 3.933 30 O -0.387 6.387 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.408 0.592 43 H 0.116 0.884 44 H 0.049 0.951 45 H 0.375 0.625 46 H 0.251 0.749 47 H 0.057 0.943 48 H 0.112 0.888 49 H 0.073 0.927 50 H 0.056 0.944 51 H 0.051 0.949 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.228 -4.718 2.545 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 C -0.200 4.200 4 C 0.037 3.963 5 H 0.077 0.923 6 C -0.181 4.181 7 C -0.082 4.082 8 H 0.088 0.912 9 C -0.173 4.173 10 C 0.301 3.699 11 O -0.456 6.456 12 N -0.357 5.357 13 C 0.021 3.979 14 H 0.111 0.889 15 C -0.190 4.190 16 C 0.035 3.965 17 H 0.071 0.929 18 N -0.360 5.360 19 C -0.369 4.369 20 H 0.093 0.907 21 C -0.259 4.259 22 N -0.612 5.612 23 Si 0.797 3.203 24 H -0.195 1.195 25 H -0.226 1.226 26 H -0.221 1.221 27 C -0.202 4.202 28 C -0.189 4.189 29 C -0.009 4.009 30 O -0.307 6.307 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.245 0.755 43 H 0.134 0.866 44 H 0.068 0.932 45 H 0.209 0.791 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.130 0.870 49 H 0.091 0.909 50 H 0.075 0.925 51 H 0.069 0.931 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.684 -4.904 2.043 18.465 hybrid contribution 1.434 0.519 0.669 1.665 sum -16.250 -4.386 2.712 17.049 Atomic orbital electron populations 1.21764 0.94329 1.01876 1.01935 1.21200 0.96715 0.96879 0.95747 1.21768 1.00795 0.95805 1.01675 1.22209 0.93217 0.94824 0.86099 0.92330 1.22326 0.96393 1.01912 0.97458 1.20840 0.92451 0.99624 0.95236 0.91161 1.21749 0.97412 1.01611 0.96516 1.21075 0.81923 0.79394 0.87535 1.90583 1.55307 1.51529 1.48166 1.46067 1.07277 1.55747 1.26565 1.21737 0.95572 0.94208 0.86426 0.88898 1.23696 0.96248 0.99799 0.99269 1.21456 0.95230 0.89316 0.90452 0.92886 1.42352 1.14982 1.35309 1.43325 1.19565 0.92647 1.11247 1.13470 0.90721 1.25409 1.00843 0.98442 1.01238 1.69775 1.34054 1.21029 1.36319 0.85180 0.80175 0.76962 0.78026 1.19450 1.22627 1.22083 1.23936 0.94540 0.99664 1.02106 1.22278 0.97148 0.99976 0.99519 1.22529 0.93221 0.98379 0.86788 1.87881 1.78624 1.50215 1.13956 0.93172 0.91776 0.92470 0.88810 0.92004 0.92953 0.93207 0.91018 0.89446 0.88865 0.87464 0.75461 0.86579 0.93215 0.79136 0.94017 0.92467 0.87015 0.90877 0.92479 0.93064 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.09 71.98 0.65 -1.51 16 2 C -0.09 -1.44 2.75 -10.80 -0.03 -1.47 16 3 C -0.14 -2.57 8.75 71.98 0.63 -1.94 16 4 C 0.09 1.85 2.32 30.63 0.07 1.92 16 5 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 6 C -0.14 -2.91 4.51 30.69 0.14 -2.77 16 7 C -0.06 -1.51 1.92 -10.68 -0.02 -1.53 16 8 H 0.07 1.79 7.96 -2.39 -0.02 1.77 16 9 C -0.13 -3.55 5.18 29.85 0.15 -3.40 16 10 C 0.51 16.63 7.57 87.66 0.66 17.29 16 11 O -0.58 -20.83 13.62 -3.03 -0.04 -20.87 16 12 N -0.71 -23.77 4.94 -440.04 -2.18 -25.94 16 13 C 0.13 4.01 4.28 45.52 0.19 4.20 16 14 H 0.09 2.88 7.55 -2.39 -0.02 2.87 16 15 C -0.15 -4.80 7.57 31.12 0.24 -4.57 16 16 C 0.14 5.33 4.54 45.52 0.21 5.53 16 17 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 18 N -0.72 -33.28 4.41 -320.42 -1.41 -34.70 16 19 C -0.24 -12.26 9.99 84.03 0.84 -11.42 16 20 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 21 C -0.07 -3.56 5.50 84.86 0.47 -3.10 16 22 N -0.96 -54.54 13.06 21.65 0.28 -54.26 16 23 Si 0.97 43.95 29.55 68.60 2.03 45.98 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 27 C -0.16 -5.07 7.61 31.12 0.24 -4.83 16 28 C -0.15 -3.91 5.12 30.68 0.16 -3.75 16 29 C 0.07 1.51 6.84 72.01 0.49 2.00 16 30 O -0.39 -8.98 9.06 -148.98 -1.35 -10.33 16 31 H 0.05 0.89 7.82 -2.38 -0.02 0.87 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.98 6.52 -2.39 -0.02 0.96 16 37 H 0.05 1.03 7.56 -2.38 -0.02 1.01 16 38 H 0.07 1.56 6.46 -2.39 -0.02 1.55 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 41 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.41 15.13 7.18 -92.71 -0.67 14.46 16 43 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.38 18.61 6.97 -92.71 -0.65 17.96 16 46 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 47 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 49 H 0.07 2.20 6.04 -2.39 -0.01 2.18 16 50 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 51 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 52 H 0.10 1.99 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -60.22 399.99 2.01 -58.21 By element: Atomic # 1 Polarization: 51.65 SS G_CDS: -0.41 Total: 51.24 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 5.09 Total: -9.33 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -3.31 Total: -114.90 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.39 Total: -31.20 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -60.22 2.01 -58.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022944721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.784 kcal (2) G-P(sol) polarization free energy of solvation -60.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds