Wall clock time and date at job start Tue Mar 31 2020 14:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47394 * 2 1 4 4 C 1.53001 * 109.47014 * 120.00284 * 2 1 3 5 5 H 1.09003 * 109.47822 * 300.02088 * 4 2 1 6 6 C 1.53098 * 109.48059 * 179.97438 * 4 2 1 7 7 C 1.53180 * 109.16114 * 182.39408 * 6 4 2 8 8 H 1.09004 * 109.53876 * 176.93456 * 7 6 4 9 9 C 1.52991 * 109.54438 * 297.11172 * 7 6 4 10 10 C 1.50701 * 109.47234 * 185.00259 * 9 7 6 11 11 O 1.21281 * 119.99978 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00207 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00046 * 180.02562 * 12 10 9 14 14 H 1.09004 * 112.84837 * 336.19092 * 13 12 10 15 15 C 1.53959 * 113.66904 * 107.44115 * 13 12 10 16 16 C 1.53773 * 87.02042 * 139.93115 * 15 13 12 17 17 H 1.09002 * 113.61575 * 89.22704 * 16 15 13 18 18 N 1.46504 * 113.61585 * 220.04560 * 16 15 13 19 19 C 1.36935 * 119.99849 * 254.14105 * 18 16 15 20 20 H 1.07997 * 120.00561 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99619 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00303 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00121 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46845 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47399 * 119.99829 * 23 21 19 26 26 H 1.48498 * 109.47295 * 240.00436 * 23 21 19 27 27 C 1.53781 * 87.17515 * 334.63844 * 16 15 13 28 28 C 1.53178 * 109.03670 * 56.98335 * 7 6 4 29 29 C 1.53089 * 109.16118 * 303.01536 * 28 7 6 30 30 O 1.42901 * 109.41778 * 57.60907 * 29 28 7 31 31 H 1.09003 * 109.47051 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46996 * 299.99757 * 1 2 3 33 33 H 1.08993 * 109.46625 * 59.99996 * 1 2 3 34 34 H 1.09002 * 109.46758 * 239.99533 * 2 1 3 35 35 H 1.09003 * 109.47385 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.47322 * 300.00141 * 3 2 1 37 37 H 1.09002 * 109.47550 * 60.00017 * 3 2 1 38 38 H 1.09000 * 109.51918 * 62.49132 * 6 4 2 39 39 H 1.08999 * 109.51773 * 302.30396 * 6 4 2 40 40 H 1.09003 * 109.47486 * 65.00403 * 9 7 6 41 41 H 1.09004 * 109.47444 * 305.00268 * 9 7 6 42 42 H 0.96997 * 120.00079 * 359.97438 * 12 10 9 43 43 H 1.08999 * 113.61122 * 25.40697 * 15 13 12 44 44 H 1.09002 * 113.65855 * 254.46052 * 15 13 12 45 45 H 0.96996 * 119.99617 * 74.13791 * 18 16 15 46 46 H 0.97000 * 119.99517 * 0.02562 * 22 21 19 47 47 H 1.09000 * 113.61164 * 139.93976 * 27 16 15 48 48 H 1.08999 * 113.61326 * 270.75600 * 27 16 15 49 49 H 1.08999 * 109.52306 * 62.92029 * 28 7 6 50 50 H 1.08995 * 109.51931 * 183.11442 * 28 7 6 51 51 H 1.09006 * 109.48489 * 297.63024 * 29 28 7 52 52 H 1.09005 * 109.49317 * 177.60043 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6764 -0.2078 2.1393 6 6 3.5710 -0.7220 1.2491 7 6 4.0735 -1.4973 2.4710 8 1 5.1621 -1.5483 2.4479 9 6 3.6212 -0.7879 3.7488 10 6 4.2181 -1.4811 4.9464 11 8 4.9344 -2.4477 4.7929 12 7 3.9552 -1.0275 6.1880 13 6 4.5360 -1.7011 7.3521 14 1 4.7976 -2.7404 7.1529 15 6 5.6624 -0.9007 8.0310 16 6 5.0711 -1.3612 9.3737 17 1 5.4795 -2.3072 9.7293 18 7 5.0709 -0.3188 10.4032 19 6 5.9703 -0.3748 11.4343 20 1 6.6794 -1.1875 11.4889 21 6 5.9704 0.6131 12.4094 22 7 5.1065 1.6039 12.3427 23 14 7.1968 0.5366 13.8165 24 1 8.0526 -0.6672 13.6621 25 1 8.0474 1.7537 13.7986 26 1 6.4657 0.4625 15.1069 27 6 3.7251 -1.5067 8.6442 28 6 3.4915 -2.9139 2.4378 29 6 1.9637 -2.8285 2.3920 30 8 1.5644 -2.0689 1.2494 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 3.9357 0.3042 1.2937 39 1 3.9349 -1.1998 0.3395 40 1 2.5337 -0.8185 3.8160 41 1 3.9547 0.2496 3.7259 42 1 3.3821 -0.2547 6.3107 43 1 5.5926 0.1749 7.8690 44 1 6.6592 -1.2956 7.8346 45 1 4.4338 0.4109 10.3544 46 1 4.4695 1.6434 11.6123 47 1 3.1603 -2.3900 8.9423 48 1 3.1240 -0.5975 8.6515 49 1 3.8539 -3.4359 1.5522 50 1 3.7994 -3.4551 3.3324 51 1 1.5994 -2.3422 3.2971 52 1 1.5451 -3.8327 2.3253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022944722.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:59 Heat of formation + Delta-G solvation = -77.664564 kcal Electronic energy + Delta-G solvation = -28071.131459 eV Core-core repulsion = 24263.483605 eV Total energy + Delta-G solvation = -3807.647855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.74861 -39.56470 -38.06720 -35.76529 -34.74237 -34.30501 -32.94062 -30.39807 -29.84658 -28.70914 -27.42118 -25.25117 -24.94121 -24.07652 -23.86204 -22.48010 -20.69538 -20.59026 -19.69029 -18.92458 -17.45864 -17.12409 -16.80079 -16.38731 -16.12736 -15.70158 -15.00950 -14.90796 -14.59942 -14.45373 -14.06433 -13.94253 -13.86458 -13.69600 -13.41359 -13.19216 -13.00323 -12.66890 -12.50858 -12.28767 -12.05376 -11.97299 -11.70568 -11.58160 -11.44400 -11.35141 -11.15158 -11.04319 -10.89115 -10.72193 -10.63949 -10.51499 -10.34946 -10.31181 -10.05100 -9.72003 -9.50357 -9.19764 -8.95586 -8.80642 -7.09148 -6.16517 -3.16704 2.60809 3.20827 3.45367 3.49569 3.55587 3.65343 4.23279 4.40861 4.47367 4.59552 4.61807 4.64616 4.73509 4.86669 4.90080 4.94779 4.95457 5.04292 5.10926 5.12158 5.23264 5.25674 5.28682 5.31086 5.35281 5.44184 5.44952 5.49571 5.55313 5.66128 5.72531 5.74664 5.78212 5.79042 5.87084 5.93495 5.97802 6.02443 6.05306 6.09062 6.10391 6.18162 6.39356 6.50346 6.64904 6.94442 7.00073 7.55465 7.77672 8.23865 8.69494 9.15505 10.01910 10.16384 11.31720 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.002019 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.632144 B =13864.987650 C =14328.315598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.149 4.149 4 C 0.094 3.906 5 H 0.058 0.942 6 C -0.147 4.147 7 C -0.072 4.072 8 H 0.083 0.917 9 C -0.145 4.145 10 C 0.511 3.489 11 O -0.542 6.542 12 N -0.716 5.716 13 C 0.119 3.881 14 H 0.109 0.891 15 C -0.175 4.175 16 C 0.174 3.826 17 H 0.080 0.920 18 N -0.722 5.722 19 C -0.335 4.335 20 H 0.067 0.933 21 C -0.045 4.045 22 N -0.944 5.944 23 Si 1.086 2.914 24 H -0.294 1.294 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.160 4.160 28 C -0.156 4.156 29 C 0.060 3.940 30 O -0.379 6.379 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.399 0.601 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.368 0.632 46 H 0.255 0.745 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.093 0.907 51 H 0.047 0.953 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.748 -3.982 -26.142 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.207 4.207 4 C 0.036 3.964 5 H 0.075 0.925 6 C -0.185 4.185 7 C -0.090 4.090 8 H 0.102 0.898 9 C -0.185 4.185 10 C 0.298 3.702 11 O -0.419 6.419 12 N -0.366 5.366 13 C 0.014 3.986 14 H 0.127 0.873 15 C -0.218 4.218 16 C 0.061 3.939 17 H 0.098 0.902 18 N -0.362 5.362 19 C -0.466 4.466 20 H 0.085 0.915 21 C -0.243 4.243 22 N -0.589 5.589 23 Si 0.917 3.083 24 H -0.220 1.220 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.200 4.200 28 C -0.193 4.193 29 C -0.017 4.017 30 O -0.298 6.298 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.232 0.768 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.201 0.799 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.087 0.913 50 H 0.112 0.888 51 H 0.065 0.935 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.654 -4.160 -24.932 26.410 hybrid contribution -0.773 0.009 -1.124 1.364 sum -8.427 -4.151 -26.056 27.697 Atomic orbital electron populations 1.21771 0.94626 1.02399 1.01363 1.21105 0.96540 0.95636 0.97456 1.21887 1.01381 0.95166 1.02221 1.22163 0.92837 0.83399 0.98007 0.92452 1.22336 0.96259 1.01176 0.98715 1.20910 1.01403 0.94645 0.92090 0.89821 1.21899 1.02186 1.01028 0.93420 1.20627 0.80834 0.84276 0.84467 1.90655 1.37857 1.27445 1.85966 1.46101 1.51258 1.33319 1.05894 1.22490 0.95686 0.97738 0.82706 0.87272 1.24337 0.97754 1.00155 0.99527 1.21289 0.92451 0.93162 0.86950 0.90213 1.42369 1.40852 1.26352 1.26605 1.20176 1.12533 1.10339 1.03585 0.91468 1.25816 1.02829 0.94125 1.01496 1.70836 1.21149 1.32654 1.34261 0.83142 0.74762 0.75047 0.75372 1.22037 1.21979 1.21960 1.23848 0.99154 1.01822 0.95128 1.22311 0.95568 0.97198 1.04226 1.22626 0.94654 0.96101 0.88307 1.87897 1.74647 1.23223 1.44006 0.91838 0.92921 0.92861 0.90556 0.92125 0.92150 0.92436 0.90554 0.90725 0.89046 0.88790 0.76755 0.90421 0.92187 0.79873 0.93392 0.91441 0.90180 0.91253 0.88838 0.93455 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.05 37.16 0.34 -0.65 16 2 C -0.09 -0.61 2.72 -90.62 -0.25 -0.86 16 3 C -0.15 -0.83 8.84 37.15 0.33 -0.50 16 4 C 0.09 0.73 1.95 -26.68 -0.05 0.68 16 5 H 0.06 0.44 6.72 -51.93 -0.35 0.09 16 6 C -0.15 -1.11 4.49 -26.59 -0.12 -1.23 16 7 C -0.07 -0.66 2.33 -90.44 -0.21 -0.87 16 8 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 9 C -0.15 -1.28 4.60 -27.89 -0.13 -1.41 16 10 C 0.51 6.33 7.53 -10.99 -0.08 6.24 16 11 O -0.54 -8.55 13.61 5.56 0.08 -8.47 16 12 N -0.72 -8.66 5.36 -52.92 -0.28 -8.94 16 13 C 0.12 1.73 4.24 -67.02 -0.28 1.45 16 14 H 0.11 1.68 7.46 -51.93 -0.39 1.30 16 15 C -0.18 -3.06 7.69 -25.83 -0.20 -3.26 16 16 C 0.17 3.39 4.47 -67.12 -0.30 3.09 16 17 H 0.08 1.58 8.11 -51.93 -0.42 1.16 16 18 N -0.72 -17.71 5.41 -52.64 -0.28 -18.00 16 19 C -0.34 -9.35 9.97 -15.06 -0.15 -9.50 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.05 -1.30 5.50 -17.43 -0.10 -1.40 16 22 N -0.94 -28.85 13.70 55.49 0.76 -28.09 16 23 Si 1.09 25.87 29.92 -169.99 -5.09 20.79 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 C -0.16 -2.46 7.58 -25.92 -0.20 -2.65 16 28 C -0.16 -1.52 5.40 -26.59 -0.14 -1.67 16 29 C 0.06 0.54 6.57 37.20 0.24 0.78 16 30 O -0.38 -3.66 9.73 -35.23 -0.34 -4.01 16 31 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.32 6.49 -51.93 -0.34 -0.02 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.49 6.57 -51.93 -0.34 0.15 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.70 5.03 -51.93 -0.26 0.44 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.40 3.93 8.73 -40.82 -0.36 3.57 16 43 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.37 9.20 6.74 -40.82 -0.28 8.93 16 46 H 0.25 7.62 6.77 -40.82 -0.28 7.34 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.09 1.10 5.96 -51.93 -0.31 0.79 16 51 H 0.05 0.41 6.49 -51.93 -0.34 0.07 16 52 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 396.32 15.07 5.97 5.97 Total: -1.00 -32.53 396.32 -9.65 -42.18 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -9.16 Total: 10.31 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.30 Total: -11.75 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.19 Total: -55.03 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.27 Total: -12.48 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.09 Total: 20.79 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.53 -9.65 -42.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022944722.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.482 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds