Wall clock time and date at job start Tue Mar 31 2020 14:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47394 * 2 1 4 4 C 1.53001 * 109.47014 * 120.00284 * 2 1 3 5 5 H 1.09003 * 109.47822 * 300.02088 * 4 2 1 6 6 C 1.53098 * 109.48059 * 179.97438 * 4 2 1 7 7 C 1.53180 * 109.16114 * 182.39408 * 6 4 2 8 8 H 1.09004 * 109.53876 * 176.93456 * 7 6 4 9 9 C 1.52991 * 109.54438 * 297.11172 * 7 6 4 10 10 C 1.50701 * 109.47234 * 185.00259 * 9 7 6 11 11 O 1.21281 * 119.99978 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00207 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00046 * 180.02562 * 12 10 9 14 14 H 1.09004 * 112.84837 * 336.19092 * 13 12 10 15 15 C 1.53959 * 113.66904 * 107.44115 * 13 12 10 16 16 C 1.53773 * 87.02042 * 139.93115 * 15 13 12 17 17 H 1.09002 * 113.61575 * 89.22704 * 16 15 13 18 18 N 1.46504 * 113.61585 * 220.04560 * 16 15 13 19 19 C 1.36935 * 119.99849 * 254.14105 * 18 16 15 20 20 H 1.07997 * 120.00561 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99619 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00303 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00121 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46845 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47399 * 119.99829 * 23 21 19 26 26 H 1.48498 * 109.47295 * 240.00436 * 23 21 19 27 27 C 1.53781 * 87.17515 * 334.63844 * 16 15 13 28 28 C 1.53178 * 109.03670 * 56.98335 * 7 6 4 29 29 C 1.53089 * 109.16118 * 303.01536 * 28 7 6 30 30 O 1.42901 * 109.41778 * 57.60907 * 29 28 7 31 31 H 1.09003 * 109.47051 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46996 * 299.99757 * 1 2 3 33 33 H 1.08993 * 109.46625 * 59.99996 * 1 2 3 34 34 H 1.09002 * 109.46758 * 239.99533 * 2 1 3 35 35 H 1.09003 * 109.47385 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.47322 * 300.00141 * 3 2 1 37 37 H 1.09002 * 109.47550 * 60.00017 * 3 2 1 38 38 H 1.09000 * 109.51918 * 62.49132 * 6 4 2 39 39 H 1.08999 * 109.51773 * 302.30396 * 6 4 2 40 40 H 1.09003 * 109.47486 * 65.00403 * 9 7 6 41 41 H 1.09004 * 109.47444 * 305.00268 * 9 7 6 42 42 H 0.96997 * 120.00079 * 359.97438 * 12 10 9 43 43 H 1.08999 * 113.61122 * 25.40697 * 15 13 12 44 44 H 1.09002 * 113.65855 * 254.46052 * 15 13 12 45 45 H 0.96996 * 119.99617 * 74.13791 * 18 16 15 46 46 H 0.97000 * 119.99517 * 0.02562 * 22 21 19 47 47 H 1.09000 * 113.61164 * 139.93976 * 27 16 15 48 48 H 1.08999 * 113.61326 * 270.75600 * 27 16 15 49 49 H 1.08999 * 109.52306 * 62.92029 * 28 7 6 50 50 H 1.08995 * 109.51931 * 183.11442 * 28 7 6 51 51 H 1.09006 * 109.48489 * 297.63024 * 29 28 7 52 52 H 1.09005 * 109.49317 * 177.60043 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6764 -0.2078 2.1393 6 6 3.5710 -0.7220 1.2491 7 6 4.0735 -1.4973 2.4710 8 1 5.1621 -1.5483 2.4479 9 6 3.6212 -0.7879 3.7488 10 6 4.2181 -1.4811 4.9464 11 8 4.9344 -2.4477 4.7929 12 7 3.9552 -1.0275 6.1880 13 6 4.5360 -1.7011 7.3521 14 1 4.7976 -2.7404 7.1529 15 6 5.6624 -0.9007 8.0310 16 6 5.0711 -1.3612 9.3737 17 1 5.4795 -2.3072 9.7293 18 7 5.0709 -0.3188 10.4032 19 6 5.9703 -0.3748 11.4343 20 1 6.6794 -1.1875 11.4889 21 6 5.9704 0.6131 12.4094 22 7 5.1065 1.6039 12.3427 23 14 7.1968 0.5366 13.8165 24 1 8.0526 -0.6672 13.6621 25 1 8.0474 1.7537 13.7986 26 1 6.4657 0.4625 15.1069 27 6 3.7251 -1.5067 8.6442 28 6 3.4915 -2.9139 2.4378 29 6 1.9637 -2.8285 2.3920 30 8 1.5644 -2.0689 1.2494 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 3.9357 0.3042 1.2937 39 1 3.9349 -1.1998 0.3395 40 1 2.5337 -0.8185 3.8160 41 1 3.9547 0.2496 3.7259 42 1 3.3821 -0.2547 6.3107 43 1 5.5926 0.1749 7.8690 44 1 6.6592 -1.2956 7.8346 45 1 4.4338 0.4109 10.3544 46 1 4.4695 1.6434 11.6123 47 1 3.1603 -2.3900 8.9423 48 1 3.1240 -0.5975 8.6515 49 1 3.8539 -3.4359 1.5522 50 1 3.7994 -3.4551 3.3324 51 1 1.5994 -2.3422 3.2971 52 1 1.5451 -3.8327 2.3253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022944722.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:58 Heat of formation + Delta-G solvation = -98.217357 kcal Electronic energy + Delta-G solvation = -28072.022695 eV Core-core repulsion = 24263.483605 eV Total energy + Delta-G solvation = -3808.539091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.60419 -40.58774 -39.31476 -36.37907 -36.10649 -35.41975 -34.35946 -31.66292 -31.04182 -29.60525 -27.91532 -26.64844 -26.16711 -25.44109 -24.54534 -23.96059 -21.73206 -21.16556 -20.98521 -19.87068 -19.44324 -18.07075 -17.50561 -17.41452 -17.08353 -16.72294 -16.50226 -15.85085 -15.69075 -15.43341 -15.32158 -15.16698 -14.85216 -14.65708 -14.48843 -14.11711 -13.83681 -13.64401 -13.42367 -13.30022 -12.97503 -12.87674 -12.71948 -12.63148 -12.40101 -12.28823 -12.20438 -12.12864 -12.03812 -11.91083 -11.86178 -11.83192 -11.69595 -11.35335 -11.22056 -11.00098 -10.90513 -10.70742 -10.23378 -9.98297 -9.11135 -8.41140 -5.34988 1.58110 1.62393 1.68859 1.80921 2.20443 2.70270 2.83060 3.35847 3.55939 3.59244 3.69638 3.72400 3.77754 3.84200 3.92405 3.99159 4.08244 4.15754 4.19116 4.21648 4.25600 4.34774 4.40680 4.49251 4.59031 4.64682 4.67754 4.75303 4.76593 4.79264 4.83418 4.84815 4.94303 5.04265 5.04657 5.05340 5.06764 5.12851 5.19054 5.23830 5.29832 5.31872 5.36371 5.47371 5.49623 5.57482 5.63277 6.35085 6.48899 6.58137 7.07572 7.26883 7.98076 8.08870 9.10955 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.002019 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.632144 B =13864.987650 C =14328.315598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.147 4.147 4 C 0.090 3.910 5 H 0.065 0.935 6 C -0.140 4.140 7 C -0.071 4.071 8 H 0.067 0.933 9 C -0.136 4.136 10 C 0.510 3.490 11 O -0.578 6.578 12 N -0.709 5.709 13 C 0.139 3.861 14 H 0.105 0.895 15 C -0.169 4.169 16 C 0.153 3.847 17 H 0.073 0.927 18 N -0.736 5.736 19 C -0.334 4.334 20 H 0.065 0.935 21 C -0.104 4.104 22 N -0.975 5.975 23 Si 1.131 2.869 24 H -0.274 1.274 25 H -0.291 1.291 26 H -0.290 1.290 27 C -0.139 4.139 28 C -0.152 4.152 29 C 0.062 3.938 30 O -0.392 6.392 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.413 0.587 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.363 0.637 46 H 0.246 0.754 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.063 0.937 50 H 0.072 0.928 51 H 0.053 0.947 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.384 -3.515 -27.210 28.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.204 4.204 4 C 0.033 3.967 5 H 0.083 0.917 6 C -0.177 4.177 7 C -0.090 4.090 8 H 0.085 0.915 9 C -0.176 4.176 10 C 0.298 3.702 11 O -0.458 6.458 12 N -0.360 5.360 13 C 0.033 3.967 14 H 0.123 0.877 15 C -0.211 4.211 16 C 0.042 3.958 17 H 0.091 0.909 18 N -0.376 5.376 19 C -0.466 4.466 20 H 0.083 0.917 21 C -0.296 4.296 22 N -0.623 5.623 23 Si 0.956 3.044 24 H -0.199 1.199 25 H -0.218 1.218 26 H -0.217 1.217 27 C -0.179 4.179 28 C -0.190 4.190 29 C -0.015 4.015 30 O -0.312 6.312 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.249 0.751 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.195 0.805 46 H 0.056 0.944 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.072 0.928 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.311 -3.715 -26.056 27.600 hybrid contribution -0.567 -0.213 -0.892 1.078 sum -8.878 -3.928 -26.947 28.643 Atomic orbital electron populations 1.21753 0.94661 1.01657 1.01938 1.21114 0.96507 0.96346 0.96703 1.21875 1.01646 0.94131 1.02755 1.22309 0.92844 0.82717 0.98833 0.91685 1.22286 0.96117 1.01759 0.97546 1.20882 1.00397 0.94582 0.93157 0.91501 1.21909 1.02973 1.01561 0.91118 1.21256 0.80082 0.83742 0.85121 1.90654 1.39506 1.29145 1.86450 1.45976 1.51185 1.33622 1.05178 1.22068 0.94038 0.97087 0.83462 0.87741 1.24167 0.98313 1.00032 0.98623 1.21611 0.95810 0.91735 0.86617 0.90916 1.42505 1.40380 1.27492 1.27192 1.20487 1.12415 1.09637 1.04046 0.91683 1.27164 1.04196 0.94031 1.04174 1.70939 1.22481 1.34131 1.34735 0.82563 0.73200 0.75790 0.72834 1.19856 1.21831 1.21663 1.23646 0.97233 1.02882 0.94118 1.22231 0.96391 0.97488 1.02879 1.22618 0.93831 0.96561 0.88461 1.87894 1.74852 1.24180 1.44258 0.93209 0.92625 0.92030 0.91214 0.91683 0.91581 0.91993 0.88853 0.91173 0.87221 0.86489 0.75084 0.91106 0.93109 0.80464 0.94362 0.90003 0.89300 0.91779 0.90956 0.92842 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.05 71.98 0.65 -1.06 16 2 C -0.09 -1.04 2.72 -10.80 -0.03 -1.07 16 3 C -0.15 -1.25 8.84 71.98 0.64 -0.62 16 4 C 0.09 1.22 1.95 30.63 0.06 1.28 16 5 H 0.07 0.79 6.72 -2.39 -0.02 0.77 16 6 C -0.14 -1.82 4.49 30.69 0.14 -1.69 16 7 C -0.07 -1.20 2.33 -10.68 -0.02 -1.23 16 8 H 0.07 1.37 7.95 -2.38 -0.02 1.35 16 9 C -0.14 -2.05 4.60 29.85 0.14 -1.91 16 10 C 0.51 11.73 7.53 87.66 0.66 12.39 16 11 O -0.58 -17.88 13.61 -3.03 -0.04 -17.93 16 12 N -0.71 -15.63 5.36 -439.75 -2.36 -17.98 16 13 C 0.14 3.87 4.24 45.58 0.19 4.07 16 14 H 0.10 3.10 7.46 -2.38 -0.02 3.08 16 15 C -0.17 -5.81 7.69 31.18 0.24 -5.57 16 16 C 0.15 5.88 4.47 45.51 0.20 6.08 16 17 H 0.07 2.88 8.11 -2.39 -0.02 2.86 16 18 N -0.74 -36.22 5.41 -320.45 -1.73 -37.95 16 19 C -0.33 -18.70 9.97 84.03 0.84 -17.86 16 20 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 21 C -0.10 -6.02 5.50 84.86 0.47 -5.56 16 22 N -0.97 -60.21 13.70 21.65 0.30 -59.91 16 23 Si 1.13 51.99 29.92 68.60 2.05 54.04 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 27 C -0.14 -4.05 7.58 31.12 0.24 -3.82 16 28 C -0.15 -2.90 5.40 30.68 0.17 -2.73 16 29 C 0.06 1.03 6.57 72.01 0.47 1.50 16 30 O -0.39 -7.02 9.73 -148.98 -1.45 -8.47 16 31 H 0.05 0.73 7.68 -2.39 -0.02 0.71 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 0.50 6.49 -2.39 -0.02 0.49 16 36 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.09 0.92 6.57 -2.39 -0.02 0.90 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 1.31 5.03 -2.39 -0.01 1.30 16 41 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.41 6.94 8.73 -92.71 -0.81 6.13 16 43 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.36 18.33 6.74 -92.71 -0.62 17.71 16 46 H 0.25 14.98 6.77 -92.71 -0.63 14.35 16 47 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.09 2.47 8.09 -2.39 -0.02 2.45 16 49 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.07 1.71 5.96 -2.39 -0.01 1.70 16 51 H 0.05 0.82 6.49 -2.38 -0.02 0.80 16 52 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -70.47 396.32 1.43 -69.04 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: -0.38 Total: 36.94 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 5.04 Total: -17.78 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -3.79 Total: -115.85 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -1.49 Total: -26.40 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.05 Total: 54.04 kcal Total: -70.47 1.43 -69.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022944722.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.177 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds