Wall clock time and date at job start Tue Mar 31 2020 14:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47452 * 2 1 4 4 C 1.53003 * 109.47292 * 120.00543 * 2 1 3 5 5 H 1.08995 * 110.54265 * 47.93104 * 4 2 1 6 6 C 1.54804 * 110.48292 * 285.31926 * 4 2 1 7 7 C 1.54998 * 102.09377 * 220.44239 * 6 4 2 8 8 O 1.44379 * 103.48841 * 37.02600 * 7 6 4 9 9 C 1.43746 * 106.97289 * 319.93859 * 8 7 6 10 10 H 1.09000 * 109.88235 * 267.08457 * 9 8 7 11 11 C 1.50709 * 109.87529 * 145.93728 * 9 8 7 12 12 O 1.21274 * 120.00192 * 353.91733 * 11 9 8 13 13 N 1.34780 * 119.99820 * 173.91772 * 11 9 8 14 14 C 1.46497 * 119.99897 * 185.30382 * 13 11 9 15 15 H 1.09001 * 109.47143 * 328.89632 * 14 13 11 16 16 C 1.52992 * 109.47268 * 88.90194 * 14 13 11 17 17 C 1.53004 * 109.47320 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46604 * 299.99489 * 17 16 14 19 19 H 1.09001 * 109.47082 * 299.99955 * 18 17 16 20 20 N 1.46497 * 109.46877 * 180.02562 * 18 17 16 21 21 C 1.36933 * 120.00130 * 85.00358 * 20 18 17 22 22 H 1.07996 * 119.99993 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99965 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99832 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00075 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46771 * 90.00302 * 25 23 21 27 27 H 1.48498 * 109.47342 * 210.00561 * 25 23 21 28 28 H 1.48503 * 109.47050 * 330.00754 * 25 23 21 29 29 C 1.53004 * 109.47123 * 60.00067 * 18 17 16 30 30 C 1.53000 * 109.46917 * 299.99810 * 29 18 17 31 31 H 1.09001 * 109.46846 * 304.98896 * 1 2 3 32 32 H 1.09005 * 109.46976 * 64.99019 * 1 2 3 33 33 H 1.09000 * 109.47155 * 184.98716 * 1 2 3 34 34 H 1.09007 * 109.46777 * 239.99931 * 2 1 3 35 35 H 1.09002 * 109.46989 * 50.55819 * 3 2 1 36 36 H 1.08989 * 109.47579 * 170.55992 * 3 2 1 37 37 H 1.09002 * 109.46687 * 290.56704 * 3 2 1 38 38 H 1.09000 * 110.91214 * 102.24442 * 6 4 2 39 39 H 1.09000 * 110.90895 * 338.64206 * 6 4 2 40 40 H 1.08996 * 110.61636 * 278.52376 * 7 6 4 41 41 H 1.08997 * 110.62149 * 155.52385 * 7 6 4 42 42 H 0.97003 * 119.99817 * 5.29910 * 13 11 9 43 43 H 1.09010 * 109.46822 * 299.99279 * 16 14 13 44 44 H 1.08991 * 109.47394 * 59.99670 * 16 14 13 45 45 H 1.08995 * 109.47303 * 179.97438 * 17 16 14 46 46 H 1.09001 * 109.47365 * 59.99271 * 17 16 14 47 47 H 0.96998 * 119.99725 * 264.99656 * 20 18 17 48 48 H 0.97001 * 120.00000 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.46625 * 180.02562 * 29 18 17 50 50 H 1.09001 * 109.47233 * 59.99980 * 29 18 17 51 51 H 1.09001 * 109.47308 * 300.00124 * 30 29 18 52 52 H 1.09002 * 109.47230 * 180.02562 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.5228 -1.6718 1.3800 6 6 1.8594 0.1705 2.5015 7 6 3.1762 -0.0881 3.2771 8 8 4.1661 -0.2001 2.2321 9 6 3.5623 -0.9435 1.1601 10 1 3.7893 -2.0038 1.2704 11 6 4.0767 -0.4416 -0.1647 12 8 4.7958 0.5341 -0.2057 13 7 3.7375 -1.0772 -1.3038 14 6 4.3288 -0.6620 -2.5782 15 1 4.5379 0.4075 -2.5504 16 6 5.6311 -1.4305 -2.8106 17 6 6.2490 -0.9963 -4.1413 18 6 5.2707 -1.2949 -5.2792 19 1 5.0615 -2.3642 -5.3074 20 7 5.8625 -0.8798 -6.5534 21 6 6.7006 -1.7274 -7.2275 22 1 6.9256 -2.7017 -6.8196 23 6 7.2618 -1.3338 -8.4346 24 7 8.0677 -2.1483 -9.0823 25 14 6.8731 0.3517 -9.1399 26 1 7.8657 1.3375 -8.6417 27 1 6.9339 0.2941 -10.6225 28 1 5.5108 0.7636 -8.7159 29 6 3.9683 -0.5263 -5.0468 30 6 3.3505 -0.9605 -3.7161 31 1 -0.3633 0.5893 0.8419 32 1 -0.3633 0.4345 -0.9314 33 1 -0.3633 -1.0238 0.0893 34 1 1.8933 -0.5139 -0.8900 35 1 1.5457 2.0026 0.7937 36 1 3.1169 1.4471 0.1685 37 1 1.8208 1.9053 -0.9622 38 1 0.9955 -0.1481 3.0848 39 1 1.7724 1.2205 2.2220 40 1 3.1111 -1.0160 3.8452 41 1 3.4055 0.7504 3.9346 42 1 3.1019 -1.8096 -1.2797 43 1 6.3283 -1.2174 -2.0001 44 1 5.4220 -2.4998 -2.8384 45 1 7.1771 -1.5435 -4.3066 46 1 6.4582 0.0730 -4.1131 47 1 5.6606 -0.0046 -6.9197 48 1 8.4596 -1.8735 -9.9260 49 1 3.2712 -0.7394 -5.8573 50 1 4.1774 0.5430 -5.0187 51 1 3.1413 -2.0299 -3.7443 52 1 2.4224 -0.4133 -3.5507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034648368.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:00 Heat of formation + Delta-G solvation = -73.938663 kcal Electronic energy + Delta-G solvation = -29387.522396 eV Core-core repulsion = 25580.036108 eV Total energy + Delta-G solvation = -3807.486288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.38232 -39.18439 -37.76535 -36.15837 -34.93358 -33.08734 -31.16514 -30.98625 -30.48444 -29.87245 -27.56775 -27.44872 -24.24174 -23.27543 -22.89054 -22.42201 -21.17140 -20.58910 -19.87532 -19.31606 -17.69844 -17.33269 -16.93275 -16.52357 -16.06231 -15.50196 -15.17247 -14.86903 -14.60945 -14.32790 -14.00535 -13.88866 -13.66790 -13.50301 -13.05600 -12.93068 -12.76648 -12.64008 -12.37071 -12.20963 -12.00232 -11.98070 -11.85236 -11.74786 -11.63223 -11.24994 -11.08074 -10.88349 -10.86897 -10.80802 -10.73661 -10.62002 -10.29553 -10.19900 -10.16746 -9.80521 -9.58735 -9.53210 -8.91358 -8.84347 -7.24062 -5.74922 -3.10038 2.45424 2.78302 3.39479 3.42890 3.47381 3.67888 3.95902 4.18540 4.33532 4.58757 4.61376 4.69010 4.76837 4.82655 4.87471 4.91950 4.95984 5.01261 5.11964 5.21861 5.30303 5.35443 5.36761 5.42610 5.47299 5.52931 5.55572 5.60713 5.61321 5.62517 5.75685 5.77787 5.79489 5.87923 5.92768 5.97891 6.11345 6.16501 6.18847 6.25306 6.35415 6.39201 6.46992 6.56140 6.64899 6.90633 7.06099 7.37027 8.01953 8.12160 8.44513 9.23388 9.96191 10.16183 11.43547 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.002624 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.143200 B =10666.361856 C =11092.490965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C -0.174 4.174 4 C -0.108 4.108 5 H 0.092 0.908 6 C -0.157 4.157 7 C 0.044 3.956 8 O -0.346 6.346 9 C 0.059 3.941 10 H 0.092 0.908 11 C 0.525 3.475 12 O -0.516 6.516 13 N -0.724 5.724 14 C 0.144 3.856 15 H 0.091 0.909 16 C -0.124 4.124 17 C -0.132 4.132 18 C 0.182 3.818 19 H 0.055 0.945 20 N -0.750 5.750 21 C -0.241 4.241 22 H 0.090 0.910 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.277 1.277 29 C -0.124 4.124 30 C -0.118 4.118 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.398 0.602 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.068 0.932 50 H 0.060 0.940 51 H 0.067 0.933 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.529 2.144 25.186 31.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 C -0.231 4.231 4 C -0.127 4.127 5 H 0.110 0.890 6 C -0.194 4.194 7 C -0.033 4.033 8 O -0.263 6.263 9 C -0.002 4.002 10 H 0.110 0.890 11 C 0.311 3.689 12 O -0.391 6.391 13 N -0.378 5.378 14 C 0.040 3.960 15 H 0.109 0.891 16 C -0.164 4.164 17 C -0.173 4.173 18 C 0.073 3.927 19 H 0.073 0.927 20 N -0.392 5.392 21 C -0.371 4.371 22 H 0.108 0.892 23 C -0.193 4.193 24 N -0.583 5.583 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 C -0.163 4.163 30 C -0.156 4.156 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.233 0.767 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.079 0.921 51 H 0.086 0.914 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.618 2.734 25.070 30.763 hybrid contribution -0.669 0.646 -0.524 1.067 sum -18.288 3.380 24.546 30.795 Atomic orbital electron populations 1.21826 0.94709 1.01588 1.01954 1.21599 0.96351 0.97468 0.97545 1.22384 1.04296 0.95011 1.01407 1.22600 0.93373 1.00149 0.96595 0.88988 1.23406 0.98419 1.02049 0.95549 1.23625 0.87220 1.01585 0.90846 1.89021 1.35977 1.75401 1.25932 1.22785 0.93029 0.96736 0.87691 0.89015 1.20155 0.80237 0.83394 0.85145 1.90708 1.36334 1.25239 1.86785 1.46299 1.46777 1.37524 1.07185 1.21132 0.93165 1.00642 0.81032 0.89073 1.21910 0.95976 0.99758 0.98736 1.22188 1.00501 1.01285 0.93363 1.20211 0.89793 0.97190 0.85519 0.92739 1.42791 1.56759 1.17777 1.21830 1.19076 1.18560 0.98070 1.01385 0.89244 1.24676 0.99400 0.97689 0.97507 1.69703 1.35372 1.35949 1.17296 0.86548 0.78028 0.85514 0.78437 1.21118 1.21836 1.20315 1.21791 0.98261 1.00605 0.95610 1.21739 0.97694 1.01809 0.94408 0.92805 0.92447 0.92702 0.88987 0.92744 0.89436 0.92829 0.90054 0.89050 0.91988 0.88614 0.76700 0.92345 0.92039 0.91290 0.92586 0.80705 0.93113 0.91323 0.92104 0.91402 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.04 37.16 0.34 -0.52 16 2 C -0.11 -0.81 2.23 -90.62 -0.20 -1.02 16 3 C -0.17 -1.69 7.87 37.16 0.29 -1.39 16 4 C -0.11 -0.71 2.83 -89.10 -0.25 -0.96 16 5 H 0.09 0.42 8.10 -51.93 -0.42 0.00 16 6 C -0.16 -0.97 6.11 -24.73 -0.15 -1.12 16 7 C 0.04 0.32 7.72 38.21 0.29 0.61 16 8 O -0.35 -3.97 10.74 -54.74 -0.59 -4.56 16 9 C 0.06 0.55 3.67 -27.31 -0.10 0.45 16 10 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 11 C 0.52 6.24 4.51 -10.98 -0.05 6.19 16 12 O -0.52 -8.47 14.22 -13.95 -0.20 -8.67 16 13 N -0.72 -7.09 3.38 -53.81 -0.18 -7.27 16 14 C 0.14 1.75 2.55 -67.93 -0.17 1.58 16 15 H 0.09 1.32 7.39 -51.93 -0.38 0.94 16 16 C -0.12 -1.75 5.52 -26.73 -0.15 -1.90 16 17 C -0.13 -2.31 5.50 -26.73 -0.15 -2.46 16 18 C 0.18 3.37 2.77 -67.93 -0.19 3.18 16 19 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 20 N -0.75 -17.55 4.93 -53.42 -0.26 -17.81 16 21 C -0.24 -6.76 10.41 -15.06 -0.16 -6.92 16 22 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 23 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 24 N -0.94 -29.49 13.97 55.49 0.78 -28.72 16 25 Si 0.88 22.27 27.74 -169.99 -4.71 17.56 16 26 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 H -0.28 -6.53 6.52 56.52 0.37 -6.17 16 29 C -0.12 -1.81 5.39 -26.73 -0.14 -1.96 16 30 C -0.12 -1.31 5.42 -26.73 -0.14 -1.46 16 31 H 0.05 0.31 7.90 -51.93 -0.41 -0.10 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.27 8.12 -51.93 -0.42 -0.15 16 34 H 0.09 0.69 4.70 -51.93 -0.24 0.45 16 35 H 0.05 0.47 6.22 -51.93 -0.32 0.14 16 36 H 0.09 1.11 4.31 -51.94 -0.22 0.89 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.65 5.22 -51.93 -0.27 0.38 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.40 2.73 7.74 -40.82 -0.32 2.41 16 43 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.36 8.35 5.66 -40.82 -0.23 8.12 16 48 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 49 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 52 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -34.17 386.53 -9.55 -43.72 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -9.17 Total: 7.65 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.03 Total: -7.72 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.33 Total: -53.80 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.79 Total: -13.23 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.17 -9.55 -43.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034648368.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.223 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds