Wall clock time and date at job start Tue Mar 31 2020 14:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47452 * 2 1 4 4 C 1.53003 * 109.47292 * 120.00543 * 2 1 3 5 5 H 1.08995 * 110.54265 * 47.93104 * 4 2 1 6 6 C 1.54804 * 110.48292 * 285.31926 * 4 2 1 7 7 C 1.54998 * 102.09377 * 220.44239 * 6 4 2 8 8 O 1.44379 * 103.48841 * 37.02600 * 7 6 4 9 9 C 1.43746 * 106.97289 * 319.93859 * 8 7 6 10 10 H 1.09000 * 109.88235 * 267.08457 * 9 8 7 11 11 C 1.50709 * 109.87529 * 145.93728 * 9 8 7 12 12 O 1.21274 * 120.00192 * 353.91733 * 11 9 8 13 13 N 1.34780 * 119.99820 * 173.91772 * 11 9 8 14 14 C 1.46497 * 119.99897 * 185.30382 * 13 11 9 15 15 H 1.09001 * 109.47143 * 328.89632 * 14 13 11 16 16 C 1.52992 * 109.47268 * 88.90194 * 14 13 11 17 17 C 1.53004 * 109.47320 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46604 * 299.99489 * 17 16 14 19 19 H 1.09001 * 109.47082 * 299.99955 * 18 17 16 20 20 N 1.46497 * 109.46877 * 180.02562 * 18 17 16 21 21 C 1.36933 * 120.00130 * 85.00358 * 20 18 17 22 22 H 1.07996 * 119.99993 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99965 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99832 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00075 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46771 * 90.00302 * 25 23 21 27 27 H 1.48498 * 109.47342 * 210.00561 * 25 23 21 28 28 H 1.48503 * 109.47050 * 330.00754 * 25 23 21 29 29 C 1.53004 * 109.47123 * 60.00067 * 18 17 16 30 30 C 1.53000 * 109.46917 * 299.99810 * 29 18 17 31 31 H 1.09001 * 109.46846 * 304.98896 * 1 2 3 32 32 H 1.09005 * 109.46976 * 64.99019 * 1 2 3 33 33 H 1.09000 * 109.47155 * 184.98716 * 1 2 3 34 34 H 1.09007 * 109.46777 * 239.99931 * 2 1 3 35 35 H 1.09002 * 109.46989 * 50.55819 * 3 2 1 36 36 H 1.08989 * 109.47579 * 170.55992 * 3 2 1 37 37 H 1.09002 * 109.46687 * 290.56704 * 3 2 1 38 38 H 1.09000 * 110.91214 * 102.24442 * 6 4 2 39 39 H 1.09000 * 110.90895 * 338.64206 * 6 4 2 40 40 H 1.08996 * 110.61636 * 278.52376 * 7 6 4 41 41 H 1.08997 * 110.62149 * 155.52385 * 7 6 4 42 42 H 0.97003 * 119.99817 * 5.29910 * 13 11 9 43 43 H 1.09010 * 109.46822 * 299.99279 * 16 14 13 44 44 H 1.08991 * 109.47394 * 59.99670 * 16 14 13 45 45 H 1.08995 * 109.47303 * 179.97438 * 17 16 14 46 46 H 1.09001 * 109.47365 * 59.99271 * 17 16 14 47 47 H 0.96998 * 119.99725 * 264.99656 * 20 18 17 48 48 H 0.97001 * 120.00000 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.46625 * 180.02562 * 29 18 17 50 50 H 1.09001 * 109.47233 * 59.99980 * 29 18 17 51 51 H 1.09001 * 109.47308 * 300.00124 * 30 29 18 52 52 H 1.09002 * 109.47230 * 180.02562 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.5228 -1.6718 1.3800 6 6 1.8594 0.1705 2.5015 7 6 3.1762 -0.0881 3.2771 8 8 4.1661 -0.2001 2.2321 9 6 3.5623 -0.9435 1.1601 10 1 3.7893 -2.0038 1.2704 11 6 4.0767 -0.4416 -0.1647 12 8 4.7958 0.5341 -0.2057 13 7 3.7375 -1.0772 -1.3038 14 6 4.3288 -0.6620 -2.5782 15 1 4.5379 0.4075 -2.5504 16 6 5.6311 -1.4305 -2.8106 17 6 6.2490 -0.9963 -4.1413 18 6 5.2707 -1.2949 -5.2792 19 1 5.0615 -2.3642 -5.3074 20 7 5.8625 -0.8798 -6.5534 21 6 6.7006 -1.7274 -7.2275 22 1 6.9256 -2.7017 -6.8196 23 6 7.2618 -1.3338 -8.4346 24 7 8.0677 -2.1483 -9.0823 25 14 6.8731 0.3517 -9.1399 26 1 7.8657 1.3375 -8.6417 27 1 6.9339 0.2941 -10.6225 28 1 5.5108 0.7636 -8.7159 29 6 3.9683 -0.5263 -5.0468 30 6 3.3505 -0.9605 -3.7161 31 1 -0.3633 0.5893 0.8419 32 1 -0.3633 0.4345 -0.9314 33 1 -0.3633 -1.0238 0.0893 34 1 1.8933 -0.5139 -0.8900 35 1 1.5457 2.0026 0.7937 36 1 3.1169 1.4471 0.1685 37 1 1.8208 1.9053 -0.9622 38 1 0.9955 -0.1481 3.0848 39 1 1.7724 1.2205 2.2220 40 1 3.1111 -1.0160 3.8452 41 1 3.4055 0.7504 3.9346 42 1 3.1019 -1.8096 -1.2797 43 1 6.3283 -1.2174 -2.0001 44 1 5.4220 -2.4998 -2.8384 45 1 7.1771 -1.5435 -4.3066 46 1 6.4582 0.0730 -4.1131 47 1 5.6606 -0.0046 -6.9197 48 1 8.4596 -1.8735 -9.9260 49 1 3.2712 -0.7394 -5.8573 50 1 4.1774 0.5430 -5.0187 51 1 3.1413 -2.0299 -3.7443 52 1 2.4224 -0.4133 -3.5507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034648368.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:59 Heat of formation + Delta-G solvation = -96.403133 kcal Electronic energy + Delta-G solvation = -29388.496529 eV Core-core repulsion = 25580.036108 eV Total energy + Delta-G solvation = -3808.460420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.14284 -40.16313 -38.90610 -36.85677 -36.35232 -34.62666 -32.94896 -31.71154 -31.53670 -30.80684 -28.86316 -28.07638 -25.46354 -24.51827 -23.64052 -23.52567 -22.42333 -21.54740 -21.13659 -20.17057 -19.48808 -18.24469 -17.66116 -17.39544 -16.86981 -16.71236 -16.39384 -15.88602 -15.80318 -15.35373 -15.07553 -15.01614 -14.70982 -14.69544 -14.35914 -14.24723 -13.76534 -13.60443 -13.36975 -13.27715 -13.11190 -12.95330 -12.91191 -12.66435 -12.46975 -12.43508 -12.27644 -12.11940 -12.05768 -11.95544 -11.79213 -11.72326 -11.48229 -11.39597 -11.31972 -11.16325 -11.01182 -10.87129 -10.40914 -9.85135 -9.29459 -8.01529 -5.34074 1.37400 1.40893 1.47905 1.58460 1.96568 2.49005 3.05433 3.29788 3.40085 3.53330 3.65774 3.73450 3.78440 3.85875 4.00307 4.15196 4.25062 4.28798 4.32708 4.33526 4.35829 4.38629 4.45935 4.53198 4.58632 4.63276 4.76180 4.79125 4.83947 4.84969 4.86496 4.89553 4.94516 5.09559 5.11941 5.13336 5.14708 5.23123 5.23773 5.26391 5.31377 5.46158 5.47882 5.50164 5.54644 5.60943 5.79400 5.84361 6.23443 6.58528 7.09595 7.28602 7.87128 8.05329 9.20197 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.002624 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.143200 B =10666.361856 C =11092.490965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C -0.173 4.173 4 C -0.101 4.101 5 H 0.126 0.874 6 C -0.153 4.153 7 C 0.037 3.963 8 O -0.386 6.386 9 C 0.057 3.943 10 H 0.115 0.885 11 C 0.522 3.478 12 O -0.569 6.569 13 N -0.707 5.707 14 C 0.153 3.847 15 H 0.067 0.933 16 C -0.114 4.114 17 C -0.125 4.125 18 C 0.176 3.824 19 H 0.049 0.951 20 N -0.754 5.754 21 C -0.225 4.225 22 H 0.057 0.943 23 C -0.068 4.068 24 N -0.986 5.986 25 Si 0.953 3.047 26 H -0.284 1.284 27 H -0.296 1.296 28 H -0.248 1.248 29 C -0.117 4.117 30 C -0.105 4.105 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.417 0.583 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.036 0.964 46 H 0.045 0.955 47 H 0.364 0.636 48 H 0.257 0.743 49 H 0.074 0.926 50 H 0.059 0.941 51 H 0.088 0.912 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.298 1.958 26.944 35.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.230 4.230 4 C -0.119 4.119 5 H 0.144 0.856 6 C -0.190 4.190 7 C -0.039 4.039 8 O -0.305 6.305 9 C -0.004 4.004 10 H 0.133 0.867 11 C 0.310 3.690 12 O -0.447 6.447 13 N -0.361 5.361 14 C 0.048 3.952 15 H 0.085 0.915 16 C -0.153 4.153 17 C -0.166 4.166 18 C 0.068 3.932 19 H 0.067 0.933 20 N -0.396 5.396 21 C -0.356 4.356 22 H 0.075 0.925 23 C -0.259 4.259 24 N -0.637 5.637 25 Si 0.781 3.219 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.173 1.173 29 C -0.155 4.155 30 C -0.144 4.144 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.127 0.873 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.256 0.744 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.197 0.803 48 H 0.065 0.935 49 H 0.093 0.907 50 H 0.078 0.922 51 H 0.107 0.893 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.461 2.528 26.886 34.494 hybrid contribution 0.562 0.665 -0.959 1.295 sum -20.899 3.192 25.927 33.454 Atomic orbital electron populations 1.21788 0.93162 1.02808 1.01872 1.21569 0.97503 0.95605 0.97988 1.22335 1.02394 0.97226 1.01007 1.22672 0.91418 1.01662 0.96188 0.85568 1.23392 0.98786 1.01258 0.95543 1.23854 0.86957 1.02761 0.90321 1.88984 1.38151 1.76052 1.27341 1.22976 0.94629 0.97287 0.85506 0.86717 1.20782 0.79247 0.82536 0.86433 1.90689 1.38835 1.27672 1.87550 1.46056 1.46532 1.37698 1.05860 1.20834 0.92690 0.98915 0.82736 0.91482 1.21788 0.96707 1.00877 0.95973 1.22018 0.99220 1.00170 0.95202 1.20471 0.91660 0.97546 0.83482 0.93306 1.42853 1.56282 1.17271 1.23234 1.19038 1.18134 0.97277 1.01131 0.92529 1.25499 0.99980 1.02041 0.98351 1.69884 1.37436 1.38415 1.17948 0.85425 0.79138 0.80269 0.77060 1.21100 1.22280 1.17268 1.21696 0.96022 0.99885 0.97945 1.21658 0.97777 1.03484 0.91450 0.92501 0.92977 0.90824 0.89080 0.92083 0.92497 0.93889 0.87303 0.90526 0.89881 0.88615 0.74397 0.93685 0.90495 0.94514 0.93584 0.80320 0.93468 0.90709 0.92226 0.89307 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.04 71.98 0.65 -0.48 16 2 C -0.11 -1.26 2.23 -10.79 -0.02 -1.29 16 3 C -0.17 -3.20 7.87 71.98 0.57 -2.63 16 4 C -0.10 -0.96 2.83 -9.81 -0.03 -0.99 16 5 H 0.13 0.43 8.10 -2.39 -0.02 0.41 16 6 C -0.15 -1.44 6.11 31.89 0.19 -1.24 16 7 C 0.04 0.46 7.72 72.67 0.56 1.02 16 8 O -0.39 -8.59 10.74 -130.32 -1.40 -9.99 16 9 C 0.06 0.94 3.67 30.22 0.11 1.05 16 10 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 11 C 0.52 11.90 4.51 87.66 0.40 12.30 16 12 O -0.57 -19.20 14.22 15.65 0.22 -18.97 16 13 N -0.71 -12.27 3.38 -442.53 -1.49 -13.76 16 14 C 0.15 3.49 2.55 44.99 0.11 3.61 16 15 H 0.07 1.92 7.39 -2.39 -0.02 1.91 16 16 C -0.11 -3.16 5.52 30.59 0.17 -2.99 16 17 C -0.13 -4.46 5.50 30.60 0.17 -4.30 16 18 C 0.18 6.41 2.77 45.00 0.12 6.54 16 19 H 0.05 1.84 8.08 -2.39 -0.02 1.83 16 20 N -0.75 -35.16 4.93 -322.93 -1.59 -36.75 16 21 C -0.22 -12.89 10.41 84.04 0.87 -12.01 16 22 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 23 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 24 N -0.99 -64.13 13.97 21.65 0.30 -63.82 16 25 Si 0.95 46.32 27.74 68.60 1.90 48.22 16 26 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 27 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 28 H -0.25 -10.75 6.52 99.48 0.65 -10.11 16 29 C -0.12 -3.16 5.39 30.60 0.17 -2.99 16 30 C -0.11 -2.00 5.42 30.60 0.17 -1.83 16 31 H 0.06 0.44 7.90 -2.39 -0.02 0.42 16 32 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.07 0.36 8.12 -2.39 -0.02 0.34 16 34 H 0.09 1.06 4.70 -2.38 -0.01 1.04 16 35 H 0.06 1.00 6.22 -2.39 -0.01 0.99 16 36 H 0.06 1.46 4.31 -2.39 -0.01 1.45 16 37 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 0.96 5.22 -2.39 -0.01 0.94 16 40 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.42 4.10 7.74 -92.71 -0.72 3.38 16 43 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.36 16.38 5.66 -92.71 -0.52 15.85 16 48 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 49 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -79.34 386.53 2.23 -77.11 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.39 Total: 27.78 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 4.68 Total: -9.83 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -2.78 Total: -114.33 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -1.18 Total: -28.96 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.22 kcal Total: -79.34 2.23 -77.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034648368.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.292 kcal (2) G-P(sol) polarization free energy of solvation -79.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds