Wall clock time and date at job start Tue Mar 31 2020 14:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46737 * 2 1 4 4 H 1.08992 * 109.49009 * 54.96911 * 3 2 1 5 5 O 1.42906 * 109.47638 * 294.93660 * 3 2 1 6 6 C 1.42902 * 114.09342 * 178.85888 * 5 3 2 7 7 C 1.53084 * 109.41420 * 61.16364 * 6 5 3 8 8 C 1.53176 * 109.16448 * 302.38641 * 7 6 5 9 9 C 1.53087 * 109.47685 * 175.00179 * 3 2 1 10 10 H 1.08997 * 109.52427 * 297.55296 * 9 3 2 11 11 C 1.50697 * 109.52657 * 57.68485 * 9 3 2 12 12 O 1.21278 * 119.99879 * 359.97438 * 11 9 3 13 13 N 1.34777 * 119.99981 * 180.02562 * 11 9 3 14 14 C 1.46505 * 119.99797 * 179.97438 * 13 11 9 15 15 H 1.08992 * 109.47276 * 325.00066 * 14 13 11 16 16 C 1.53002 * 109.46958 * 84.99979 * 14 13 11 17 17 C 1.52997 * 109.46978 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47164 * 299.99874 * 17 16 14 19 19 H 1.08998 * 109.46505 * 299.99708 * 18 17 16 20 20 N 1.46500 * 109.47249 * 180.02562 * 18 17 16 21 21 C 1.36932 * 120.00140 * 84.99833 * 20 18 17 22 22 H 1.08004 * 120.00449 * 359.97438 * 21 20 18 23 23 C 1.38813 * 119.99838 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00147 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99922 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47053 * 60.00202 * 25 23 21 27 27 H 1.48499 * 109.47049 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47098 * 299.99805 * 25 23 21 29 29 C 1.52997 * 109.47127 * 59.99836 * 18 17 16 30 30 C 1.52996 * 109.46998 * 204.99519 * 14 13 11 31 31 H 1.08997 * 109.47064 * 60.00429 * 1 2 3 32 32 H 1.09007 * 109.47069 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47127 * 299.99976 * 1 2 3 34 34 H 1.08992 * 109.47118 * 239.99735 * 2 1 3 35 35 H 1.08997 * 109.47064 * 119.99571 * 2 1 3 36 36 H 1.09000 * 109.48019 * 181.14552 * 6 5 3 37 37 H 1.08998 * 109.48364 * 301.16902 * 6 5 3 38 38 H 1.08997 * 109.52579 * 62.29731 * 7 6 5 39 39 H 1.09007 * 109.52524 * 182.48488 * 7 6 5 40 40 H 1.08998 * 109.54671 * 297.11497 * 8 7 6 41 41 H 1.09005 * 109.54502 * 176.84116 * 8 7 6 42 42 H 0.97001 * 120.00457 * 359.97438 * 13 11 9 43 43 H 1.09002 * 109.47097 * 299.99818 * 16 14 13 44 44 H 1.09001 * 109.47142 * 59.99782 * 16 14 13 45 45 H 1.09001 * 109.47375 * 59.99908 * 17 16 14 46 46 H 1.09000 * 109.47140 * 179.97438 * 17 16 14 47 47 H 0.97005 * 119.99374 * 264.99912 * 20 18 17 48 48 H 0.96998 * 120.00493 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.47153 * 180.02562 * 29 18 17 50 50 H 1.09001 * 109.46832 * 60.00321 * 29 18 17 51 51 H 1.09004 * 109.47368 * 60.00227 * 30 14 13 52 52 H 1.09001 * 109.47372 * 300.00383 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6051 1.9820 0.8413 5 8 1.6632 2.0811 -1.2217 6 6 2.0698 3.4479 -1.3151 7 6 3.5967 3.5306 -1.2421 8 6 4.0732 2.8887 0.0644 9 6 3.5656 1.4447 0.1257 10 1 3.8534 0.9966 1.0768 11 6 4.1654 0.6516 -1.0066 12 8 3.4444 0.1345 -1.8334 13 7 5.5031 0.5160 -1.0999 14 6 6.0862 -0.2555 -2.2004 15 1 5.4329 -1.0937 -2.4426 16 6 6.2388 0.6437 -3.4288 17 6 6.8471 -0.1622 -4.5783 18 6 8.2205 -0.6910 -4.1597 19 1 8.8741 0.1470 -3.9177 20 7 8.8032 -1.4622 -5.2605 21 6 9.4976 -0.8224 -6.2523 22 1 9.6154 0.2508 -6.2231 23 6 10.0493 -1.5531 -7.2956 24 7 9.9054 -2.8608 -7.3315 25 14 10.9961 -0.6802 -8.6489 26 1 12.1561 0.0352 -8.0592 27 1 11.4803 -1.6776 -9.6368 28 1 10.1049 0.2956 -9.3263 29 6 8.0679 -1.5902 -2.9312 30 6 7.4595 -0.7838 -1.7814 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.7281 3.8648 -2.2624 37 1 1.6352 4.0136 -0.4911 38 1 4.0312 2.9991 -2.0888 39 1 3.9066 4.5753 -1.2689 40 1 3.6789 3.4500 0.9115 41 1 5.1627 2.8938 0.0971 42 1 6.0799 0.9292 -0.4384 43 1 5.2604 1.0201 -3.7274 44 1 6.8921 1.4819 -3.1866 45 1 6.1934 -1.0001 -4.8204 46 1 6.9554 0.4783 -5.4536 47 1 8.6971 -2.4260 -5.2869 48 1 10.2912 -3.3715 -8.0603 49 1 9.0463 -1.9666 -2.6327 50 1 7.4142 -2.4282 -3.1733 51 1 7.3509 -1.4244 -0.9062 52 1 8.1129 0.0545 -1.5391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034660523.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:50 Heat of formation + Delta-G solvation = -99.678304 kcal Electronic energy + Delta-G solvation = -29126.726943 eV Core-core repulsion = 25318.124501 eV Total energy + Delta-G solvation = -3808.602442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.92073 -38.95400 -37.57717 -34.96142 -34.19514 -33.89020 -32.81493 -30.73603 -30.38035 -30.06946 -27.34699 -25.60568 -24.53725 -23.46886 -22.40673 -21.96316 -21.52821 -20.75919 -19.93296 -19.17993 -17.29454 -16.93912 -16.66495 -16.07974 -16.01907 -15.41603 -15.09434 -14.70782 -14.38998 -13.99835 -13.88053 -13.64558 -13.62309 -13.53936 -13.42735 -13.07716 -12.71427 -12.67878 -12.42786 -11.99210 -11.92974 -11.85002 -11.76268 -11.43845 -11.38820 -11.05022 -10.97200 -10.81701 -10.76384 -10.71744 -10.63465 -10.53559 -10.18089 -10.06754 -9.74982 -9.69251 -9.61258 -9.33623 -8.88334 -8.79662 -6.91543 -5.73035 -3.01406 2.67484 3.12325 3.45787 3.50172 3.51184 3.64612 4.25520 4.37251 4.43687 4.61528 4.63049 4.75638 4.91741 4.96021 5.04882 5.06020 5.09487 5.20826 5.24348 5.30477 5.32260 5.38869 5.49178 5.54786 5.58575 5.61623 5.65069 5.71476 5.76453 5.80900 5.85092 5.87444 5.90880 5.92525 6.06713 6.17044 6.26041 6.27140 6.32558 6.42909 6.53003 6.61053 6.72377 6.76401 7.02203 7.13584 7.18506 7.53721 7.72557 8.31324 8.45926 9.56641 10.15631 10.50170 11.49753 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.002509 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.516008 B =11158.818871 C =11412.282311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.116 3.884 4 H 0.059 0.941 5 O -0.357 6.357 6 C 0.059 3.941 7 C -0.161 4.161 8 C -0.112 4.112 9 C -0.145 4.145 10 H 0.102 0.898 11 C 0.520 3.480 12 O -0.514 6.514 13 N -0.728 5.728 14 C 0.147 3.853 15 H 0.086 0.914 16 C -0.122 4.122 17 C -0.132 4.132 18 C 0.178 3.822 19 H 0.045 0.955 20 N -0.726 5.726 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.120 4.120 30 C -0.118 4.118 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.394 0.606 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.067 0.933 50 H 0.061 0.939 51 H 0.061 0.939 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.900 11.562 21.657 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.076 0.924 5 O -0.275 6.275 6 C -0.018 4.018 7 C -0.198 4.198 8 C -0.150 4.150 9 C -0.167 4.167 10 H 0.120 0.880 11 C 0.305 3.695 12 O -0.389 6.389 13 N -0.380 5.380 14 C 0.043 3.957 15 H 0.104 0.896 16 C -0.161 4.161 17 C -0.173 4.173 18 C 0.068 3.932 19 H 0.063 0.937 20 N -0.366 5.366 21 C -0.368 4.368 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.159 4.159 30 C -0.157 4.157 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.227 0.773 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.086 0.914 50 H 0.080 0.920 51 H 0.080 0.920 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.425 11.173 20.769 28.180 hybrid contribution 1.058 0.632 -0.242 1.256 sum -14.367 11.805 20.526 27.697 Atomic orbital electron populations 1.21676 0.95575 1.01323 1.01678 1.21882 0.96461 0.94395 1.04389 1.21847 0.90247 0.94951 0.87243 0.92361 1.88088 1.77746 1.23733 1.37960 1.22542 0.93480 0.83860 1.01888 1.22227 0.97508 1.01677 0.98411 1.21581 1.01307 0.93550 0.98534 1.22139 0.98506 0.96941 0.99081 0.88027 1.20234 0.82238 0.80576 0.86450 1.90668 1.59581 1.47233 1.41449 1.46202 1.06703 1.55100 1.29948 1.21065 0.94409 0.94238 0.85987 0.89567 1.21874 1.00581 0.98304 0.95337 1.22219 0.98890 0.99414 0.96763 1.20227 0.92044 0.93449 0.87469 0.93719 1.42424 1.63360 1.06527 1.24268 1.19192 1.25437 0.91752 1.00426 0.91326 1.24734 1.01684 0.95540 0.99092 1.69646 1.50220 1.04644 1.33731 0.86290 0.79835 0.78273 0.81934 1.21341 1.21723 1.21312 1.21759 1.00667 0.98626 0.94870 1.21752 0.95059 1.00073 0.98796 0.91972 0.92943 0.93641 0.87592 0.91656 0.88942 0.93553 0.90644 0.90624 0.90805 0.90893 0.77264 0.92419 0.92556 0.92531 0.91922 0.78317 0.93503 0.91449 0.91988 0.92003 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.81 37.16 0.36 -0.99 16 2 C -0.13 -1.38 5.21 -26.73 -0.14 -1.52 16 3 C 0.12 1.11 2.22 -26.68 -0.06 1.05 16 4 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 5 O -0.36 -4.23 9.00 -51.93 -0.47 -4.70 16 6 C 0.06 0.53 6.84 37.20 0.25 0.78 16 7 C -0.16 -1.34 5.87 -26.60 -0.16 -1.49 16 8 C -0.11 -0.76 5.46 -26.54 -0.14 -0.91 16 9 C -0.14 -1.22 2.60 -91.63 -0.24 -1.46 16 10 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 11 C 0.52 6.10 5.60 -10.99 -0.06 6.04 16 12 O -0.51 -8.15 12.58 -11.14 -0.14 -8.29 16 13 N -0.73 -7.64 4.96 -53.81 -0.27 -7.90 16 14 C 0.15 1.93 2.45 -67.93 -0.17 1.76 16 15 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 16 C -0.12 -1.82 5.49 -26.73 -0.15 -1.97 16 17 C -0.13 -2.44 5.50 -26.73 -0.15 -2.59 16 18 C 0.18 3.50 2.77 -67.93 -0.19 3.31 16 19 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 20 N -0.73 -18.29 5.12 -53.42 -0.27 -18.56 16 21 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 22 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 23 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 25 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 C -0.12 -1.94 5.39 -26.71 -0.14 -2.08 16 30 C -0.12 -1.46 5.39 -26.71 -0.14 -1.60 16 31 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.11 1.43 5.46 -51.93 -0.28 1.15 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.83 7.39 -51.93 -0.38 0.45 16 39 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.43 7.51 -51.93 -0.39 0.04 16 42 H 0.39 3.03 8.01 -40.82 -0.33 2.70 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.38 10.30 7.80 -40.82 -0.32 9.98 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 51 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 395.85 15.07 5.97 5.97 Total: -1.00 -32.74 395.85 -10.50 -43.24 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -9.66 Total: 9.38 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.36 Total: -8.95 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.18 Total: -54.25 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.61 Total: -12.98 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.74 -10.50 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034660523.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.437 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds