Wall clock time and date at job start Tue Mar 31 2020 14:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46737 * 2 1 4 4 H 1.08992 * 109.49009 * 54.96911 * 3 2 1 5 5 O 1.42906 * 109.47638 * 294.93660 * 3 2 1 6 6 C 1.42902 * 114.09342 * 178.85888 * 5 3 2 7 7 C 1.53084 * 109.41420 * 61.16364 * 6 5 3 8 8 C 1.53176 * 109.16448 * 302.38641 * 7 6 5 9 9 C 1.53087 * 109.47685 * 175.00179 * 3 2 1 10 10 H 1.08997 * 109.52427 * 297.55296 * 9 3 2 11 11 C 1.50697 * 109.52657 * 57.68485 * 9 3 2 12 12 O 1.21278 * 119.99879 * 359.97438 * 11 9 3 13 13 N 1.34777 * 119.99981 * 180.02562 * 11 9 3 14 14 C 1.46505 * 119.99797 * 179.97438 * 13 11 9 15 15 H 1.08992 * 109.47276 * 325.00066 * 14 13 11 16 16 C 1.53002 * 109.46958 * 84.99979 * 14 13 11 17 17 C 1.52997 * 109.46978 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47164 * 299.99874 * 17 16 14 19 19 H 1.08998 * 109.46505 * 299.99708 * 18 17 16 20 20 N 1.46500 * 109.47249 * 180.02562 * 18 17 16 21 21 C 1.36932 * 120.00140 * 84.99833 * 20 18 17 22 22 H 1.08004 * 120.00449 * 359.97438 * 21 20 18 23 23 C 1.38813 * 119.99838 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00147 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99922 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47053 * 60.00202 * 25 23 21 27 27 H 1.48499 * 109.47049 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47098 * 299.99805 * 25 23 21 29 29 C 1.52997 * 109.47127 * 59.99836 * 18 17 16 30 30 C 1.52996 * 109.46998 * 204.99519 * 14 13 11 31 31 H 1.08997 * 109.47064 * 60.00429 * 1 2 3 32 32 H 1.09007 * 109.47069 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47127 * 299.99976 * 1 2 3 34 34 H 1.08992 * 109.47118 * 239.99735 * 2 1 3 35 35 H 1.08997 * 109.47064 * 119.99571 * 2 1 3 36 36 H 1.09000 * 109.48019 * 181.14552 * 6 5 3 37 37 H 1.08998 * 109.48364 * 301.16902 * 6 5 3 38 38 H 1.08997 * 109.52579 * 62.29731 * 7 6 5 39 39 H 1.09007 * 109.52524 * 182.48488 * 7 6 5 40 40 H 1.08998 * 109.54671 * 297.11497 * 8 7 6 41 41 H 1.09005 * 109.54502 * 176.84116 * 8 7 6 42 42 H 0.97001 * 120.00457 * 359.97438 * 13 11 9 43 43 H 1.09002 * 109.47097 * 299.99818 * 16 14 13 44 44 H 1.09001 * 109.47142 * 59.99782 * 16 14 13 45 45 H 1.09001 * 109.47375 * 59.99908 * 17 16 14 46 46 H 1.09000 * 109.47140 * 179.97438 * 17 16 14 47 47 H 0.97005 * 119.99374 * 264.99912 * 20 18 17 48 48 H 0.96998 * 120.00493 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.47153 * 180.02562 * 29 18 17 50 50 H 1.09001 * 109.46832 * 60.00321 * 29 18 17 51 51 H 1.09004 * 109.47368 * 60.00227 * 30 14 13 52 52 H 1.09001 * 109.47372 * 300.00383 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6051 1.9820 0.8413 5 8 1.6632 2.0811 -1.2217 6 6 2.0698 3.4479 -1.3151 7 6 3.5967 3.5306 -1.2421 8 6 4.0732 2.8887 0.0644 9 6 3.5656 1.4447 0.1257 10 1 3.8534 0.9966 1.0768 11 6 4.1654 0.6516 -1.0066 12 8 3.4444 0.1345 -1.8334 13 7 5.5031 0.5160 -1.0999 14 6 6.0862 -0.2555 -2.2004 15 1 5.4329 -1.0937 -2.4426 16 6 6.2388 0.6437 -3.4288 17 6 6.8471 -0.1622 -4.5783 18 6 8.2205 -0.6910 -4.1597 19 1 8.8741 0.1470 -3.9177 20 7 8.8032 -1.4622 -5.2605 21 6 9.4976 -0.8224 -6.2523 22 1 9.6154 0.2508 -6.2231 23 6 10.0493 -1.5531 -7.2956 24 7 9.9054 -2.8608 -7.3315 25 14 10.9961 -0.6802 -8.6489 26 1 12.1561 0.0352 -8.0592 27 1 11.4803 -1.6776 -9.6368 28 1 10.1049 0.2956 -9.3263 29 6 8.0679 -1.5902 -2.9312 30 6 7.4595 -0.7838 -1.7814 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.7281 3.8648 -2.2624 37 1 1.6352 4.0136 -0.4911 38 1 4.0312 2.9991 -2.0888 39 1 3.9066 4.5753 -1.2689 40 1 3.6789 3.4500 0.9115 41 1 5.1627 2.8938 0.0971 42 1 6.0799 0.9292 -0.4384 43 1 5.2604 1.0201 -3.7274 44 1 6.8921 1.4819 -3.1866 45 1 6.1934 -1.0001 -4.8204 46 1 6.9554 0.4783 -5.4536 47 1 8.6971 -2.4260 -5.2869 48 1 10.2912 -3.3715 -8.0603 49 1 9.0463 -1.9666 -2.6327 50 1 7.4142 -2.4282 -3.1733 51 1 7.3509 -1.4244 -0.9062 52 1 8.1129 0.0545 -1.5391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034660523.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:49 Heat of formation + Delta-G solvation = -120.577141 kcal Electronic energy + Delta-G solvation = -29127.633185 eV Core-core repulsion = 25318.124501 eV Total energy + Delta-G solvation = -3809.508684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.74358 -40.02703 -38.72109 -36.35732 -35.16324 -34.65921 -34.24753 -32.37032 -31.69487 -30.94002 -28.87559 -26.25082 -25.82599 -24.89669 -23.66908 -22.99648 -22.25914 -21.95281 -21.12587 -20.29551 -19.08447 -17.98654 -17.48975 -17.05799 -16.84578 -16.75632 -16.18897 -15.85156 -15.48550 -15.38353 -15.10305 -15.05853 -14.77126 -14.47477 -14.28485 -14.15172 -13.99879 -13.53661 -13.38429 -13.25195 -13.11905 -13.08900 -12.80207 -12.60176 -12.57118 -12.38436 -12.29475 -12.17388 -12.06629 -12.04824 -11.72511 -11.63906 -11.47044 -11.44656 -11.23612 -11.19121 -10.84105 -10.46897 -10.20719 -9.88224 -9.00256 -7.93822 -5.22140 1.45649 1.48947 1.54858 1.80487 2.23956 2.56256 2.97699 3.38683 3.58119 3.74646 3.75753 3.80353 3.88547 3.91553 4.02900 4.12278 4.28421 4.30505 4.34275 4.37254 4.40601 4.44074 4.50544 4.54173 4.59010 4.63729 4.66295 4.76323 4.78344 4.86085 4.91021 4.92665 4.99799 5.04559 5.11952 5.13251 5.14489 5.16895 5.24593 5.27526 5.29308 5.41206 5.46964 5.51649 5.54208 5.62579 5.71470 6.28786 6.47909 6.71970 7.34005 7.47141 8.11772 8.34246 9.29783 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.002509 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.516008 B =11158.818871 C =11412.282311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.110 3.890 4 H 0.084 0.916 5 O -0.392 6.392 6 C 0.053 3.947 7 C -0.160 4.160 8 C -0.108 4.108 9 C -0.138 4.138 10 H 0.134 0.866 11 C 0.514 3.486 12 O -0.562 6.562 13 N -0.714 5.714 14 C 0.156 3.844 15 H 0.059 0.941 16 C -0.107 4.107 17 C -0.123 4.123 18 C 0.174 3.826 19 H 0.048 0.952 20 N -0.740 5.740 21 C -0.238 4.238 22 H 0.074 0.926 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.971 3.029 26 H -0.275 1.275 27 H -0.296 1.296 28 H -0.281 1.281 29 C -0.114 4.114 30 C -0.104 4.104 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.413 0.587 43 H 0.041 0.959 44 H 0.074 0.926 45 H 0.035 0.965 46 H 0.037 0.963 47 H 0.371 0.629 48 H 0.250 0.750 49 H 0.067 0.933 50 H 0.050 0.950 51 H 0.088 0.912 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.420 13.885 25.044 32.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.052 3.948 4 H 0.102 0.898 5 O -0.311 6.311 6 C -0.024 4.024 7 C -0.198 4.198 8 C -0.145 4.145 9 C -0.160 4.160 10 H 0.152 0.848 11 C 0.302 3.698 12 O -0.440 6.440 13 N -0.367 5.367 14 C 0.051 3.949 15 H 0.077 0.923 16 C -0.147 4.147 17 C -0.164 4.164 18 C 0.066 3.934 19 H 0.066 0.934 20 N -0.379 5.379 21 C -0.369 4.369 22 H 0.092 0.908 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.800 3.200 26 H -0.201 1.201 27 H -0.222 1.222 28 H -0.207 1.207 29 C -0.152 4.152 30 C -0.142 4.142 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.107 0.893 42 H 0.250 0.750 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.202 0.798 48 H 0.059 0.941 49 H 0.086 0.914 50 H 0.069 0.931 51 H 0.107 0.893 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.941 13.557 24.218 31.521 hybrid contribution 0.815 -0.073 -1.293 1.531 sum -14.127 13.484 22.925 30.115 Atomic orbital electron populations 1.21637 0.95222 1.01427 1.01609 1.21858 0.96872 0.95184 1.03395 1.22015 0.91198 0.94367 0.87236 0.89791 1.88053 1.78391 1.25214 1.39463 1.22688 0.94186 0.82972 1.02533 1.22210 0.96824 1.02508 0.98220 1.21646 1.02321 0.92206 0.98348 1.22189 0.97463 0.97705 0.98618 0.84848 1.20960 0.82103 0.79971 0.86773 1.90678 1.60696 1.49125 1.43478 1.45973 1.06774 1.54569 1.29357 1.20728 0.94728 0.93256 0.86208 0.92311 1.21712 0.99606 0.98505 0.94850 1.22030 0.98267 0.98634 0.97426 1.20469 0.91765 0.93736 0.87414 0.93433 1.42676 1.63578 1.06291 1.25334 1.19586 1.24448 0.92127 1.00788 0.90759 1.25561 1.03525 0.96284 1.01718 1.69810 1.51876 1.06110 1.34457 0.85242 0.78724 0.77067 0.78944 1.20079 1.22239 1.20733 1.21652 1.00882 0.98131 0.94581 1.21647 0.94116 1.00692 0.97761 0.93995 0.92819 0.91617 0.91367 0.89756 0.89780 0.91143 0.94123 0.88778 0.87988 0.89333 0.74996 0.94003 0.90752 0.94626 0.94403 0.79766 0.94103 0.91420 0.93106 0.89334 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.81 71.98 0.71 -1.85 16 2 C -0.14 -2.68 5.21 30.60 0.16 -2.52 16 3 C 0.11 1.88 2.22 30.62 0.07 1.94 16 4 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 5 O -0.39 -9.13 9.00 -133.02 -1.20 -10.33 16 6 C 0.05 0.87 6.84 72.01 0.49 1.37 16 7 C -0.16 -2.33 5.87 30.68 0.18 -2.15 16 8 C -0.11 -1.02 5.46 30.71 0.17 -0.86 16 9 C -0.14 -1.90 2.60 -11.45 -0.03 -1.93 16 10 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 11 C 0.51 11.41 5.60 87.66 0.49 11.90 16 12 O -0.56 -18.32 12.58 12.94 0.16 -18.16 16 13 N -0.71 -13.29 4.96 -442.54 -2.19 -15.48 16 14 C 0.16 3.93 2.45 44.99 0.11 4.04 16 15 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 16 C -0.11 -3.20 5.49 30.59 0.17 -3.03 16 17 C -0.12 -4.69 5.50 30.60 0.17 -4.52 16 18 C 0.17 6.88 2.77 44.99 0.12 7.01 16 19 H 0.05 1.86 8.08 -2.39 -0.02 1.85 16 20 N -0.74 -38.21 5.12 -322.94 -1.65 -39.86 16 21 C -0.24 -13.45 9.93 84.03 0.83 -12.61 16 22 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 23 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 24 N -0.97 -60.86 13.06 21.65 0.28 -60.57 16 25 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 26 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 28 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 29 C -0.11 -3.57 5.39 30.61 0.17 -3.41 16 30 C -0.10 -2.28 5.39 30.61 0.17 -2.11 16 31 H 0.04 0.91 7.82 -2.39 -0.02 0.89 16 32 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 1.92 5.46 -2.39 -0.01 1.90 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.04 0.87 7.39 -2.39 -0.02 0.86 16 39 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.09 0.60 7.51 -2.38 -0.02 0.58 16 42 H 0.41 4.62 8.01 -92.71 -0.74 3.88 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.37 20.68 7.80 -92.70 -0.72 19.96 16 48 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 49 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -75.60 395.85 1.29 -74.30 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: -0.57 Total: 33.96 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 4.44 Total: -12.90 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -3.56 Total: -115.92 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -1.03 Total: -28.49 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -75.60 1.29 -74.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034660523.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.275 kcal (2) G-P(sol) polarization free energy of solvation -75.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds