Wall clock time and date at job start Tue Mar 31 2020 14:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47141 * 2 1 4 4 H 1.08994 * 109.49859 * 305.06944 * 3 2 1 5 5 C 1.53628 * 109.42648 * 65.28992 * 3 2 1 6 6 N 1.46929 * 108.54136 * 174.72595 * 5 3 2 7 7 C 1.34777 * 120.63092 * 126.37246 * 6 5 3 8 8 O 1.21283 * 119.99750 * 359.71529 * 7 6 5 9 9 C 1.50702 * 119.99928 * 179.97438 * 7 6 5 10 10 O 1.42899 * 109.46876 * 179.72354 * 9 7 6 11 11 C 1.42901 * 113.99607 * 179.97438 * 10 9 7 12 12 C 1.54263 * 110.03439 * 267.90430 * 11 10 9 13 13 C 1.54962 * 104.16444 * 217.14020 * 12 11 10 14 14 C 1.54885 * 102.77433 * 37.88622 * 13 12 11 15 15 C 1.53876 * 110.03082 * 150.69079 * 11 10 9 16 16 C 1.46923 * 118.73574 * 306.09133 * 6 5 3 17 17 C 1.53192 * 108.77564 * 53.86561 * 16 6 5 18 18 C 1.53036 * 109.49910 * 185.00058 * 3 2 1 19 19 H 1.08991 * 109.44769 * 58.67402 * 18 3 2 20 20 N 1.46503 * 109.46025 * 298.70724 * 18 3 2 21 21 C 1.36939 * 119.99921 * 154.93622 * 20 18 3 22 22 H 1.08002 * 119.99970 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00112 * 180.02562 * 21 20 18 24 24 N 1.31619 * 119.99902 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00028 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47155 * 89.99829 * 25 23 21 27 27 H 1.48504 * 109.47240 * 209.99678 * 25 23 21 28 28 H 1.48501 * 109.47162 * 329.99707 * 25 23 21 29 29 H 1.08999 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47207 * 299.99494 * 1 2 3 31 31 H 1.08997 * 109.47264 * 59.99343 * 1 2 3 32 32 H 1.09000 * 109.47274 * 240.00958 * 2 1 3 33 33 H 1.08995 * 109.47820 * 120.00150 * 2 1 3 34 34 H 1.09007 * 109.73889 * 54.98807 * 5 3 2 35 35 H 1.08999 * 109.66465 * 294.41950 * 5 3 2 36 36 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 37 37 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 38 38 H 1.08997 * 110.01637 * 29.29953 * 11 10 9 39 39 H 1.09004 * 110.48784 * 335.78853 * 12 11 10 40 40 H 1.09000 * 110.48797 * 98.42577 * 12 11 10 41 41 H 1.08996 * 110.71623 * 279.57510 * 13 12 11 42 42 H 1.08999 * 110.92217 * 156.29769 * 13 12 11 43 43 H 1.09009 * 110.48606 * 203.40838 * 14 13 12 44 44 H 1.08998 * 110.60215 * 80.82298 * 14 13 12 45 45 H 1.09005 * 110.03430 * 238.57059 * 15 11 10 46 46 H 1.08999 * 110.03290 * 359.97438 * 15 11 10 47 47 H 1.09003 * 109.58523 * 173.64973 * 16 6 5 48 48 H 1.08998 * 109.59507 * 293.92944 * 16 6 5 49 49 H 1.08998 * 109.49840 * 65.31182 * 17 16 6 50 50 H 1.09001 * 109.49830 * 185.37680 * 17 16 6 51 51 H 0.96996 * 120.00040 * 334.92890 * 20 18 3 52 52 H 0.96998 * 120.00170 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9823 -0.8409 5 6 1.6393 2.1262 1.3162 6 7 2.2450 3.4644 1.3508 7 6 1.4857 4.5564 1.5684 8 8 0.2896 4.4404 1.7328 9 6 2.1219 5.9221 1.6017 10 8 1.1171 6.9099 1.8398 11 6 1.6177 8.2474 1.8909 12 6 1.9618 8.6277 3.3458 13 6 1.5517 10.1181 3.4553 14 6 0.2561 10.1798 2.6089 15 6 0.5338 9.2341 1.4223 16 6 3.6951 3.5888 1.1500 17 6 4.0735 2.8883 -0.1587 18 6 3.5652 1.4451 -0.1257 19 1 3.8543 0.9372 -1.0457 20 7 4.1507 0.7475 1.0218 21 6 5.3880 0.1707 0.9139 22 1 5.9320 0.2297 -0.0172 23 6 5.9426 -0.4907 2.0010 24 7 5.2794 -0.5631 3.1356 25 14 7.6300 -1.2782 1.8537 26 1 8.6717 -0.2921 2.2382 27 1 7.7070 -2.4562 2.7546 28 1 7.8530 -1.7122 0.4511 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.0008 1.5394 2.1607 35 1 0.5542 2.2148 1.3679 36 1 2.8633 5.9582 2.4000 37 1 2.6070 6.1203 0.6460 38 1 2.5030 8.3388 1.2617 39 1 1.3860 8.0214 4.0450 40 1 3.0301 8.5108 3.5282 41 1 2.3217 10.7621 3.0305 42 1 1.3499 10.3912 4.4911 43 1 0.0802 11.1955 2.2541 44 1 -0.5972 9.8257 3.1873 45 1 0.8935 9.8049 0.5661 46 1 -0.3738 8.6927 1.1554 47 1 3.9669 4.6428 1.0921 48 1 4.2209 3.1212 1.9825 49 1 3.6191 3.4150 -0.9979 50 1 5.1576 2.8901 -0.2721 51 1 3.6620 0.6943 1.8580 52 1 5.6671 -1.0249 3.8954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037804413.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:57 Heat of formation + Delta-G solvation = -87.516916 kcal Electronic energy + Delta-G solvation = -28927.940591 eV Core-core repulsion = 25119.865506 eV Total energy + Delta-G solvation = -3808.075085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.14401 -39.04234 -37.72061 -35.85265 -34.43745 -33.74407 -31.70737 -29.72057 -29.28682 -28.93868 -28.19225 -26.91392 -24.54186 -23.74490 -23.47559 -21.00383 -20.81707 -20.54986 -19.71532 -18.25538 -17.48906 -17.21917 -16.72625 -15.98610 -15.77023 -15.52240 -14.82562 -14.74685 -14.42525 -14.03432 -13.99144 -13.64608 -13.57196 -13.29673 -13.23860 -12.97408 -12.65234 -12.38496 -12.25598 -12.08637 -11.75970 -11.66596 -11.38131 -11.37648 -11.32752 -11.09868 -10.99369 -10.87382 -10.82209 -10.78013 -10.72834 -10.30675 -10.25616 -10.18121 -9.79968 -9.69688 -9.56782 -9.43151 -8.94475 -8.22398 -7.00092 -5.81352 -3.09897 2.82187 2.89705 3.39210 3.45402 3.46844 3.85159 4.31721 4.34218 4.55123 4.64223 4.74153 4.95146 5.04921 5.12500 5.15102 5.20466 5.26001 5.28957 5.33713 5.40036 5.43838 5.47151 5.53544 5.57217 5.62174 5.64959 5.70673 5.76205 5.78922 5.82065 5.88315 5.92181 5.96776 6.07664 6.08207 6.15434 6.18725 6.34952 6.37772 6.40999 6.56342 6.61100 6.69794 6.75485 6.92731 6.98587 7.09992 7.66177 7.70168 8.37114 8.41851 9.48790 10.05508 10.40628 11.40980 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014619 B = 0.002950 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.808244 B = 9489.202849 C =10747.918204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.120 3.880 6 N -0.601 5.601 7 C 0.514 3.486 8 O -0.534 6.534 9 C 0.046 3.954 10 O -0.355 6.355 11 C 0.082 3.918 12 C -0.150 4.150 13 C -0.123 4.123 14 C -0.123 4.123 15 C -0.123 4.123 16 C 0.112 3.888 17 C -0.150 4.150 18 C 0.178 3.822 19 H 0.051 0.949 20 N -0.719 5.719 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.087 0.913 49 H 0.048 0.952 50 H 0.075 0.925 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 17.495 -4.150 19.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.001 4.001 6 N -0.335 5.335 7 C 0.300 3.700 8 O -0.410 6.410 9 C -0.034 4.034 10 O -0.273 6.273 11 C 0.024 3.976 12 C -0.188 4.188 13 C -0.160 4.160 14 C -0.161 4.161 15 C -0.161 4.161 16 C -0.010 4.010 17 C -0.191 4.191 18 C 0.068 3.932 19 H 0.069 0.931 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.209 1.209 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.084 0.916 48 H 0.105 0.895 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.451 17.299 -4.081 19.273 hybrid contribution 1.412 -0.432 0.209 1.491 sum -6.040 16.867 -3.872 18.330 Atomic orbital electron populations 1.21854 0.96803 1.01027 1.01392 1.21416 0.94291 0.95732 1.03354 1.21829 0.97312 0.96154 0.96976 0.91550 1.21782 0.98849 0.81268 0.98250 1.48075 1.08676 1.06389 1.70361 1.20121 0.87071 0.85504 0.77265 1.90681 1.14721 1.86330 1.49299 1.22289 0.91478 0.88018 1.01613 1.88081 1.32223 1.14178 1.92868 1.22873 0.96556 0.82314 0.95898 1.22946 1.01473 0.96923 0.97433 1.22434 0.97427 0.95944 1.00242 1.22334 0.98080 0.99094 0.96556 1.22216 0.99627 0.96146 0.98112 1.21755 0.79217 0.99774 1.00257 1.22527 1.01818 0.99411 0.95352 1.20217 0.89780 0.90560 0.92645 0.93092 1.42485 1.19111 1.63940 1.10568 1.19210 0.93625 1.26970 0.97046 0.91274 1.24704 0.98541 1.01468 0.96054 1.69646 1.38059 1.48061 1.02241 0.86243 0.84401 0.78779 0.77048 1.21861 1.21892 1.20869 0.93165 0.92759 0.93384 0.92039 0.90487 0.90653 0.89547 0.90452 0.90510 0.91797 0.90195 0.91406 0.91464 0.91327 0.91550 0.91276 0.91040 0.90096 0.91583 0.89503 0.93280 0.90684 0.78076 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.68 37.16 0.36 -1.76 16 2 C -0.11 -1.76 5.19 -26.73 -0.14 -1.89 16 3 C -0.10 -1.66 2.15 -90.27 -0.19 -1.86 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 5 C 0.12 2.05 5.05 -3.48 -0.02 2.04 16 6 N -0.60 -9.73 2.97 -172.50 -0.51 -10.25 16 7 C 0.51 8.57 7.78 -10.98 -0.09 8.48 16 8 O -0.53 -10.84 15.91 -14.35 -0.23 -11.07 16 9 C 0.05 0.59 4.61 36.01 0.17 0.76 16 10 O -0.36 -4.98 9.43 -55.14 -0.52 -5.50 16 11 C 0.08 0.84 3.38 -25.61 -0.09 0.75 16 12 C -0.15 -1.39 6.56 -25.03 -0.16 -1.56 16 13 C -0.12 -0.93 6.91 -24.70 -0.17 -1.10 16 14 C -0.12 -0.96 6.83 -25.08 -0.17 -1.13 16 15 C -0.12 -1.12 6.61 -25.61 -0.17 -1.29 16 16 C 0.11 1.71 6.08 -3.71 -0.02 1.69 16 17 C -0.15 -2.37 5.78 -26.61 -0.15 -2.52 16 18 C 0.18 3.23 2.53 -67.89 -0.17 3.06 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 N -0.72 -16.12 3.72 -53.39 -0.20 -16.32 16 21 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 22 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -26.74 13.06 55.49 0.72 -26.01 16 25 Si 0.90 21.51 29.55 -169.99 -5.02 16.48 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.76 6.70 -51.93 -0.35 0.41 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 34 H 0.08 1.42 6.64 -51.93 -0.34 1.08 16 35 H 0.09 1.51 5.73 -51.93 -0.30 1.21 16 36 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 37 H 0.08 0.83 7.64 -51.93 -0.40 0.43 16 38 H 0.06 0.56 7.81 -51.93 -0.41 0.15 16 39 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.85 7.95 -51.93 -0.41 0.44 16 47 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 48 H 0.09 1.56 7.74 -51.93 -0.40 1.16 16 49 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 51 H 0.38 9.30 5.93 -40.82 -0.24 9.06 16 52 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 398.26 15.07 6.00 6.00 Total: -1.00 -30.38 398.26 -10.45 -40.83 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -9.43 Total: 8.78 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -1.27 Total: -2.96 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.01 Total: -52.58 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.75 Total: -16.56 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.38 -10.45 -40.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037804413.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.684 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds