Wall clock time and date at job start Tue Mar 31 2020 14:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47141 * 2 1 4 4 H 1.08994 * 109.49859 * 305.06944 * 3 2 1 5 5 C 1.53628 * 109.42648 * 65.28992 * 3 2 1 6 6 N 1.46929 * 108.54136 * 174.72595 * 5 3 2 7 7 C 1.34777 * 120.63092 * 126.37246 * 6 5 3 8 8 O 1.21283 * 119.99750 * 359.71529 * 7 6 5 9 9 C 1.50702 * 119.99928 * 179.97438 * 7 6 5 10 10 O 1.42899 * 109.46876 * 179.72354 * 9 7 6 11 11 C 1.42901 * 113.99607 * 179.97438 * 10 9 7 12 12 C 1.54263 * 110.03439 * 267.90430 * 11 10 9 13 13 C 1.54962 * 104.16444 * 217.14020 * 12 11 10 14 14 C 1.54885 * 102.77433 * 37.88622 * 13 12 11 15 15 C 1.53876 * 110.03082 * 150.69079 * 11 10 9 16 16 C 1.46923 * 118.73574 * 306.09133 * 6 5 3 17 17 C 1.53192 * 108.77564 * 53.86561 * 16 6 5 18 18 C 1.53036 * 109.49910 * 185.00058 * 3 2 1 19 19 H 1.08991 * 109.44769 * 58.67402 * 18 3 2 20 20 N 1.46503 * 109.46025 * 298.70724 * 18 3 2 21 21 C 1.36939 * 119.99921 * 154.93622 * 20 18 3 22 22 H 1.08002 * 119.99970 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00112 * 180.02562 * 21 20 18 24 24 N 1.31619 * 119.99902 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00028 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47155 * 89.99829 * 25 23 21 27 27 H 1.48504 * 109.47240 * 209.99678 * 25 23 21 28 28 H 1.48501 * 109.47162 * 329.99707 * 25 23 21 29 29 H 1.08999 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47207 * 299.99494 * 1 2 3 31 31 H 1.08997 * 109.47264 * 59.99343 * 1 2 3 32 32 H 1.09000 * 109.47274 * 240.00958 * 2 1 3 33 33 H 1.08995 * 109.47820 * 120.00150 * 2 1 3 34 34 H 1.09007 * 109.73889 * 54.98807 * 5 3 2 35 35 H 1.08999 * 109.66465 * 294.41950 * 5 3 2 36 36 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 37 37 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 38 38 H 1.08997 * 110.01637 * 29.29953 * 11 10 9 39 39 H 1.09004 * 110.48784 * 335.78853 * 12 11 10 40 40 H 1.09000 * 110.48797 * 98.42577 * 12 11 10 41 41 H 1.08996 * 110.71623 * 279.57510 * 13 12 11 42 42 H 1.08999 * 110.92217 * 156.29769 * 13 12 11 43 43 H 1.09009 * 110.48606 * 203.40838 * 14 13 12 44 44 H 1.08998 * 110.60215 * 80.82298 * 14 13 12 45 45 H 1.09005 * 110.03430 * 238.57059 * 15 11 10 46 46 H 1.08999 * 110.03290 * 359.97438 * 15 11 10 47 47 H 1.09003 * 109.58523 * 173.64973 * 16 6 5 48 48 H 1.08998 * 109.59507 * 293.92944 * 16 6 5 49 49 H 1.08998 * 109.49840 * 65.31182 * 17 16 6 50 50 H 1.09001 * 109.49830 * 185.37680 * 17 16 6 51 51 H 0.96996 * 120.00040 * 334.92890 * 20 18 3 52 52 H 0.96998 * 120.00170 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9823 -0.8409 5 6 1.6393 2.1262 1.3162 6 7 2.2450 3.4644 1.3508 7 6 1.4857 4.5564 1.5684 8 8 0.2896 4.4404 1.7328 9 6 2.1219 5.9221 1.6017 10 8 1.1171 6.9099 1.8398 11 6 1.6177 8.2474 1.8909 12 6 1.9618 8.6277 3.3458 13 6 1.5517 10.1181 3.4553 14 6 0.2561 10.1798 2.6089 15 6 0.5338 9.2341 1.4223 16 6 3.6951 3.5888 1.1500 17 6 4.0735 2.8883 -0.1587 18 6 3.5652 1.4451 -0.1257 19 1 3.8543 0.9372 -1.0457 20 7 4.1507 0.7475 1.0218 21 6 5.3880 0.1707 0.9139 22 1 5.9320 0.2297 -0.0172 23 6 5.9426 -0.4907 2.0010 24 7 5.2794 -0.5631 3.1356 25 14 7.6300 -1.2782 1.8537 26 1 8.6717 -0.2921 2.2382 27 1 7.7070 -2.4562 2.7546 28 1 7.8530 -1.7122 0.4511 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.0008 1.5394 2.1607 35 1 0.5542 2.2148 1.3679 36 1 2.8633 5.9582 2.4000 37 1 2.6070 6.1203 0.6460 38 1 2.5030 8.3388 1.2617 39 1 1.3860 8.0214 4.0450 40 1 3.0301 8.5108 3.5282 41 1 2.3217 10.7621 3.0305 42 1 1.3499 10.3912 4.4911 43 1 0.0802 11.1955 2.2541 44 1 -0.5972 9.8257 3.1873 45 1 0.8935 9.8049 0.5661 46 1 -0.3738 8.6927 1.1554 47 1 3.9669 4.6428 1.0921 48 1 4.2209 3.1212 1.9825 49 1 3.6191 3.4150 -0.9979 50 1 5.1576 2.8901 -0.2721 51 1 3.6620 0.6943 1.8580 52 1 5.6671 -1.0249 3.8954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037804413.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:56 Heat of formation + Delta-G solvation = -103.542347 kcal Electronic energy + Delta-G solvation = -28928.635505 eV Core-core repulsion = 25119.865506 eV Total energy + Delta-G solvation = -3808.770000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.44195 -39.96705 -39.03374 -36.72456 -35.90486 -35.33810 -33.39512 -31.03140 -30.73973 -29.65439 -29.26018 -27.90053 -26.03579 -25.23985 -25.01628 -22.16701 -21.64112 -21.31045 -20.99166 -19.68650 -19.24051 -18.37523 -17.84521 -17.08567 -16.95611 -16.49318 -16.39375 -15.85369 -15.71383 -15.60314 -15.30855 -14.81914 -14.74018 -14.56934 -14.28812 -14.23701 -14.07744 -13.67129 -13.46000 -13.08018 -12.94375 -12.84693 -12.83663 -12.64419 -12.44442 -12.35787 -12.15236 -12.06450 -12.01515 -11.93575 -11.83362 -11.57844 -11.50725 -11.47866 -11.44669 -11.11930 -10.88729 -10.68850 -10.55736 -9.61684 -8.90272 -7.86890 -5.12941 1.50376 1.51398 1.53662 1.58855 1.73648 2.61123 2.84254 3.46609 3.50438 3.67856 3.69338 3.81947 3.86744 4.01696 4.05836 4.09036 4.12303 4.22404 4.28935 4.34391 4.37443 4.44708 4.46454 4.54197 4.58082 4.61375 4.69923 4.74490 4.79699 4.84975 4.88424 4.95976 5.00873 5.03767 5.05218 5.12866 5.18148 5.21754 5.23422 5.25561 5.29498 5.32462 5.40433 5.46227 5.52262 5.62280 5.66632 6.19714 6.34801 6.44396 7.12090 7.42428 8.18967 8.42291 9.36430 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014619 B = 0.002950 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.808244 B = 9489.202849 C =10747.918204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.085 0.915 5 C 0.126 3.874 6 N -0.599 5.599 7 C 0.508 3.492 8 O -0.577 6.577 9 C 0.050 3.950 10 O -0.386 6.386 11 C 0.074 3.926 12 C -0.152 4.152 13 C -0.118 4.118 14 C -0.123 4.123 15 C -0.125 4.125 16 C 0.116 3.884 17 C -0.142 4.142 18 C 0.171 3.829 19 H 0.048 0.952 20 N -0.725 5.725 21 C -0.223 4.223 22 H 0.076 0.924 23 C -0.074 4.074 24 N -0.970 5.970 25 Si 0.963 3.037 26 H -0.290 1.290 27 H -0.305 1.305 28 H -0.272 1.272 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.059 0.941 47 H 0.107 0.893 48 H 0.055 0.945 49 H 0.078 0.922 50 H 0.071 0.929 51 H 0.373 0.627 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.901 19.812 -6.152 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.111 4.111 4 H 0.103 0.897 5 C 0.003 3.997 6 N -0.332 5.332 7 C 0.297 3.703 8 O -0.457 6.457 9 C -0.029 4.029 10 O -0.305 6.305 11 C 0.017 3.983 12 C -0.190 4.190 13 C -0.156 4.156 14 C -0.161 4.161 15 C -0.162 4.162 16 C -0.006 4.006 17 C -0.183 4.183 18 C 0.063 3.937 19 H 0.066 0.934 20 N -0.366 5.366 21 C -0.355 4.355 22 H 0.094 0.906 23 C -0.266 4.266 24 N -0.621 5.621 25 Si 0.794 3.206 26 H -0.217 1.217 27 H -0.232 1.232 28 H -0.197 1.197 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.125 0.875 48 H 0.073 0.927 49 H 0.097 0.903 50 H 0.090 0.910 51 H 0.206 0.794 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.560 19.648 -6.139 21.605 hybrid contribution 1.069 -1.122 0.780 1.735 sum -5.491 18.526 -5.359 20.052 Atomic orbital electron populations 1.21788 0.94925 1.01893 1.01779 1.21344 0.95934 0.95316 1.01788 1.21734 0.96033 0.96334 0.96955 0.89691 1.21590 0.98461 0.81884 0.97771 1.48127 1.09099 1.06004 1.69998 1.20877 0.86617 0.86846 0.75918 1.90658 1.16738 1.87076 1.51197 1.22330 0.91126 0.85560 1.03866 1.88060 1.33487 1.15783 1.93196 1.23165 0.97650 0.80729 0.96806 1.22952 1.01797 0.97781 0.96453 1.22440 0.97560 0.94923 1.00632 1.22348 0.97888 0.99731 0.96099 1.22266 0.98539 0.96138 0.99278 1.21761 0.78113 1.01936 0.98746 1.22402 1.01677 0.97569 0.96632 1.20459 0.90827 0.91713 0.90747 0.93358 1.42602 1.18310 1.64282 1.11384 1.19564 0.94252 1.24990 0.96706 0.90575 1.25377 1.01763 1.03315 0.96164 1.69805 1.39551 1.49895 1.02865 0.85290 0.80926 0.77393 0.77040 1.21728 1.23193 1.19701 0.92143 0.93434 0.91838 0.91791 0.93747 0.93345 0.90093 0.88679 0.87348 0.89584 0.92516 0.90275 0.89774 0.90919 0.89757 0.92541 0.89052 0.92218 0.87482 0.92674 0.90347 0.91025 0.79382 0.94465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.68 71.98 0.70 -3.24 16 2 C -0.11 -3.37 5.19 30.60 0.16 -3.21 16 3 C -0.09 -2.87 2.15 -10.57 -0.02 -2.89 16 4 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 5 C 0.13 4.33 5.05 86.51 0.44 4.77 16 6 N -0.60 -18.86 2.97 -818.05 -2.43 -21.29 16 7 C 0.51 16.45 7.78 87.66 0.68 17.13 16 8 O -0.58 -23.58 15.91 16.00 0.25 -23.33 16 9 C 0.05 1.18 4.61 71.24 0.33 1.51 16 10 O -0.39 -10.30 9.43 -129.94 -1.23 -11.52 16 11 C 0.07 1.35 3.38 31.32 0.11 1.45 16 12 C -0.15 -2.57 6.56 31.69 0.21 -2.36 16 13 C -0.12 -1.52 6.91 31.91 0.22 -1.30 16 14 C -0.12 -1.72 6.83 31.67 0.22 -1.50 16 15 C -0.12 -2.04 6.61 31.32 0.21 -1.83 16 16 C 0.12 3.32 6.08 86.36 0.52 3.85 16 17 C -0.14 -4.13 5.78 30.67 0.18 -3.95 16 18 C 0.17 6.02 2.53 45.02 0.11 6.13 16 19 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 20 N -0.72 -32.83 3.72 -322.81 -1.20 -34.03 16 21 C -0.22 -11.37 9.93 84.03 0.83 -10.54 16 22 H 0.08 3.72 7.83 -2.91 -0.02 3.70 16 23 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 24 N -0.97 -57.32 13.06 21.65 0.28 -57.04 16 25 Si 0.96 44.62 29.55 68.60 2.03 46.65 16 26 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 28 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.33 6.70 -2.38 -0.02 1.32 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.04 1.70 7.70 -2.39 -0.02 1.69 16 34 H 0.05 1.93 6.64 -2.38 -0.02 1.92 16 35 H 0.08 2.89 5.73 -2.39 -0.01 2.87 16 36 H 0.10 1.89 7.95 -2.38 -0.02 1.87 16 37 H 0.11 1.85 7.64 -2.39 -0.02 1.84 16 38 H 0.09 1.18 7.81 -2.39 -0.02 1.16 16 39 H 0.06 1.21 8.08 -2.38 -0.02 1.19 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.06 1.23 7.95 -2.39 -0.02 1.21 16 47 H 0.11 2.18 5.93 -2.39 -0.01 2.17 16 48 H 0.05 1.97 7.74 -2.39 -0.02 1.95 16 49 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.37 18.71 5.93 -92.71 -0.55 18.16 16 52 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -67.84 398.26 3.40 -64.45 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: 0.33 Total: 35.67 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 5.35 Total: 0.43 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -3.35 Total: -112.35 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.97 Total: -34.85 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.84 3.40 -64.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037804413.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.096 kcal (2) G-P(sol) polarization free energy of solvation -67.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds