Wall clock time and date at job start Tue Mar 31 2020 14:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46807 * 2 1 4 4 H 1.08997 * 109.52790 * 54.92136 * 3 2 1 5 5 C 1.53197 * 109.49817 * 294.83632 * 3 2 1 6 6 N 1.46921 * 108.77527 * 185.41482 * 5 3 2 7 7 C 1.34779 * 120.63408 * 233.59396 * 6 5 3 8 8 O 1.21281 * 119.99577 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99994 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.46844 * 179.97438 * 9 7 6 11 11 C 1.53184 * 109.54368 * 294.81779 * 10 9 7 12 12 C 1.53098 * 109.15807 * 183.24308 * 11 10 9 13 13 O 1.42902 * 109.48664 * 57.47513 * 12 11 10 14 14 C 1.42895 * 114.09802 * 298.88646 * 13 12 11 15 15 C 1.53089 * 109.41815 * 61.15844 * 14 13 12 16 16 C 1.46927 * 118.73848 * 53.61343 * 6 5 3 17 17 C 1.53192 * 108.77485 * 306.39105 * 16 6 5 18 18 C 1.53036 * 109.31556 * 54.63581 * 17 16 6 19 19 H 1.08997 * 109.45248 * 178.62583 * 18 17 16 20 20 N 1.46500 * 109.46251 * 58.65158 * 18 17 16 21 21 C 1.36935 * 119.99795 * 84.93172 * 20 18 17 22 22 H 1.08006 * 119.99956 * 0.02562 * 21 20 18 23 23 C 1.38809 * 120.00104 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00002 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00116 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 239.99934 * 25 23 21 28 28 H 1.48500 * 109.47454 * 119.99927 * 25 23 21 29 29 H 1.09001 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46509 * 299.99921 * 1 2 3 31 31 H 1.08994 * 109.47229 * 59.99775 * 1 2 3 32 32 H 1.09004 * 109.46509 * 240.00079 * 2 1 3 33 33 H 1.08994 * 109.47229 * 120.00224 * 2 1 3 34 34 H 1.08995 * 109.58660 * 305.20366 * 5 3 2 35 35 H 1.08999 * 109.58011 * 65.48984 * 5 3 2 36 36 H 1.08996 * 109.46938 * 299.98787 * 9 7 6 37 37 H 1.08998 * 109.47687 * 59.99840 * 9 7 6 38 38 H 1.08996 * 109.54907 * 54.99582 * 10 9 7 39 39 H 1.09004 * 109.51902 * 303.06365 * 11 10 9 40 40 H 1.09000 * 109.52130 * 63.24320 * 11 10 9 41 41 H 1.08997 * 109.40845 * 297.49464 * 12 11 10 42 42 H 1.09007 * 109.49117 * 177.50733 * 12 11 10 43 43 H 1.09000 * 109.48275 * 301.17605 * 14 13 12 44 44 H 1.09006 * 109.49121 * 181.14801 * 14 13 12 45 45 H 1.08999 * 109.53059 * 182.48096 * 15 14 13 46 46 H 1.09005 * 109.52070 * 62.29308 * 15 14 13 47 47 H 1.08998 * 109.58977 * 66.17988 * 16 6 5 48 48 H 1.09002 * 109.59192 * 186.46007 * 16 6 5 49 49 H 1.09003 * 109.49985 * 294.68205 * 17 16 6 50 50 H 1.09003 * 109.49799 * 174.58853 * 17 16 6 51 51 H 0.96997 * 120.00022 * 264.93646 * 20 18 17 52 52 H 0.97004 * 120.00335 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 0.8407 5 6 1.6385 2.1268 -1.3106 6 7 2.2450 3.4643 -1.3507 7 6 1.4857 4.5565 -1.5681 8 8 0.2898 4.4404 -1.7332 9 6 2.1228 5.9216 -1.6070 10 6 1.0480 6.9788 -1.8679 11 6 0.4556 6.7732 -3.2655 12 6 -0.5601 7.8832 -3.5489 13 8 0.0785 9.1559 -3.4282 14 6 0.6084 9.4218 -2.1281 15 6 1.6726 8.3751 -1.7884 16 6 3.6952 3.5888 -1.1500 17 6 4.0736 2.8881 0.1587 18 6 3.5653 1.4450 0.1256 19 1 3.8546 0.9371 1.0456 20 7 4.1507 0.7475 -1.0220 21 6 5.3885 0.1718 -0.9147 22 1 5.9331 0.2317 0.0161 23 6 5.9434 -0.4886 -2.0022 24 7 5.2800 -0.5612 -3.1366 25 14 7.6317 -1.2745 -1.8556 26 1 8.1637 -1.0531 -0.4869 27 1 8.5507 -0.6621 -2.8484 28 1 7.5232 -2.7326 -2.1151 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.9965 1.5377 -2.1549 35 1 0.5531 2.2138 -1.3596 36 1 2.6074 6.1238 -0.6518 37 1 2.8648 5.9538 -2.4049 38 1 0.2594 6.8891 -1.1209 39 1 1.2526 6.8121 -4.0082 40 1 -0.0398 5.8035 -3.3121 41 1 -1.3780 7.8174 -2.8315 42 1 -0.9526 7.7677 -4.5593 43 1 -0.1943 9.3762 -1.3920 44 1 1.0578 10.4148 -2.1147 45 1 2.0467 8.5499 -0.7796 46 1 2.4949 8.4474 -2.5003 47 1 4.2208 3.1190 -1.9812 48 1 3.9674 4.6428 -1.0945 49 1 3.6193 3.4147 0.9980 50 1 5.1578 2.8894 0.2717 51 1 3.6614 0.6935 -1.8578 52 1 4.4035 -0.1528 -3.2129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037810915.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:40 Heat of formation + Delta-G solvation = -93.209846 kcal Electronic energy + Delta-G solvation = -29430.458016 eV Core-core repulsion = 25622.136068 eV Total energy + Delta-G solvation = -3808.321949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.43961 -39.34830 -37.92220 -34.74122 -34.57553 -33.97421 -31.83300 -31.22876 -29.82357 -29.18072 -28.03529 -25.15825 -23.91565 -23.72514 -23.50398 -23.14359 -20.93241 -20.30669 -19.50946 -18.35285 -17.39699 -17.00703 -16.22868 -16.11989 -15.92831 -15.55711 -15.04586 -14.84630 -14.77491 -14.23180 -13.94223 -13.72265 -13.66660 -13.40848 -13.36183 -12.99943 -12.83483 -12.64834 -12.30710 -12.23562 -12.01612 -11.79388 -11.59257 -11.44588 -11.24685 -11.11302 -10.95713 -10.76259 -10.71162 -10.58674 -10.42799 -10.35648 -10.22270 -10.07129 -9.91125 -9.76366 -9.40850 -9.19897 -8.95565 -8.30411 -7.07503 -6.13921 -3.14480 2.77295 3.19304 3.48404 3.54203 3.63407 3.71683 4.43332 4.51539 4.61636 4.62645 4.79944 4.87973 5.02308 5.09245 5.15140 5.20418 5.24982 5.27757 5.34674 5.37645 5.41762 5.43413 5.53843 5.57047 5.59975 5.63362 5.67711 5.68377 5.72979 5.74967 5.81499 5.91512 5.94528 6.04641 6.08600 6.16325 6.22223 6.23749 6.29068 6.31372 6.45886 6.53836 6.58053 6.67156 6.80404 6.91092 7.03089 7.65266 7.77946 8.34139 8.70826 9.17348 10.03835 10.19346 11.33786 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.003095 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.135778 B = 9045.502525 C = 9964.216009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.067 0.933 5 C 0.119 3.881 6 N -0.603 5.603 7 C 0.513 3.487 8 O -0.552 6.552 9 C -0.135 4.135 10 C -0.072 4.072 11 C -0.156 4.156 12 C 0.063 3.937 13 O -0.387 6.387 14 C 0.062 3.938 15 C -0.153 4.153 16 C 0.114 3.886 17 C -0.149 4.149 18 C 0.185 3.815 19 H 0.051 0.949 20 N -0.730 5.730 21 C -0.328 4.328 22 H 0.064 0.936 23 C -0.044 4.044 24 N -0.944 5.944 25 Si 1.083 2.917 26 H -0.295 1.295 27 H -0.294 1.294 28 H -0.294 1.294 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.049 0.951 50 H 0.074 0.926 51 H 0.366 0.634 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.761 15.344 5.253 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.124 4.124 4 H 0.085 0.915 5 C -0.003 4.003 6 N -0.335 5.335 7 C 0.302 3.698 8 O -0.431 6.431 9 C -0.174 4.174 10 C -0.090 4.090 11 C -0.194 4.194 12 C -0.014 4.014 13 O -0.306 6.306 14 C -0.015 4.015 15 C -0.190 4.190 16 C -0.009 4.009 17 C -0.191 4.191 18 C 0.074 3.926 19 H 0.069 0.931 20 N -0.373 5.373 21 C -0.459 4.459 22 H 0.082 0.918 23 C -0.242 4.242 24 N -0.589 5.589 25 Si 0.914 3.086 26 H -0.222 1.222 27 H -0.221 1.221 28 H -0.221 1.221 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.090 0.910 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.201 0.799 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.058 14.524 4.395 17.181 hybrid contribution -0.985 0.565 0.940 1.474 sum -9.042 15.089 5.336 18.382 Atomic orbital electron populations 1.21851 0.96661 1.01120 1.01391 1.21405 0.94402 0.95720 1.03184 1.21770 0.97394 0.96128 0.97134 0.91499 1.21632 0.98884 0.81866 0.97919 1.48172 1.08711 1.06613 1.69960 1.20588 0.86909 0.86183 0.76170 1.90611 1.15012 1.86707 1.50792 1.21744 0.99508 0.92168 1.04030 1.20925 0.97092 0.92723 0.98307 1.22368 0.99862 1.00794 0.96327 1.22582 0.94223 0.82716 1.01875 1.87908 1.75533 1.35834 1.31326 1.22531 0.95433 0.98440 0.85054 1.22277 0.99301 0.95014 1.02452 1.21717 0.79190 1.00133 0.99831 1.22508 1.01873 0.99211 0.95467 1.20143 0.89542 0.90559 0.92334 0.93108 1.42484 1.19429 1.65170 1.10266 1.20071 0.94635 1.31602 0.99638 0.91784 1.25688 1.05566 1.00167 0.92732 1.70834 1.14514 1.47682 1.25896 0.83179 0.74730 0.76282 0.74387 1.22199 1.22126 1.22118 0.93074 0.93296 0.92800 0.90931 0.91958 0.91447 0.89486 0.88968 0.88916 0.90381 0.91654 0.88707 0.93252 0.89036 0.93323 0.89039 0.90844 0.90869 0.90132 0.91045 0.93266 0.90705 0.79891 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.72 5.19 -26.73 -0.14 -1.86 16 3 C -0.10 -1.67 2.14 -90.49 -0.19 -1.86 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 5 C 0.12 1.96 5.03 -3.71 -0.02 1.94 16 6 N -0.60 -9.28 2.97 -172.77 -0.51 -9.79 16 7 C 0.51 7.58 7.44 -10.98 -0.08 7.50 16 8 O -0.55 -9.48 13.40 5.56 0.07 -9.41 16 9 C -0.13 -1.50 3.53 -27.88 -0.10 -1.60 16 10 C -0.07 -0.76 1.92 -90.43 -0.17 -0.94 16 11 C -0.16 -1.80 5.13 -26.59 -0.14 -1.93 16 12 C 0.06 0.66 6.84 37.21 0.25 0.91 16 13 O -0.39 -4.40 10.77 -35.23 -0.38 -4.78 16 14 C 0.06 0.55 6.84 37.20 0.25 0.81 16 15 C -0.15 -1.33 5.43 -26.59 -0.14 -1.47 16 16 C 0.11 1.72 6.08 -3.71 -0.02 1.70 16 17 C -0.15 -2.40 5.78 -26.61 -0.15 -2.55 16 18 C 0.18 3.38 2.53 -67.89 -0.17 3.21 16 19 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 20 N -0.73 -16.46 3.72 -53.38 -0.20 -16.66 16 21 C -0.33 -8.56 9.93 -15.06 -0.15 -8.71 16 22 H 0.06 1.67 7.83 -52.48 -0.41 1.26 16 23 C -0.04 -1.21 5.50 -17.43 -0.10 -1.30 16 24 N -0.94 -27.98 13.70 55.49 0.76 -27.22 16 25 Si 1.08 25.17 29.92 -169.99 -5.09 20.08 16 26 H -0.30 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.73 6.70 -51.93 -0.35 0.38 16 32 H 0.07 1.33 7.70 -51.93 -0.40 0.93 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.23 6.64 -51.93 -0.34 0.88 16 35 H 0.09 1.44 5.73 -51.93 -0.30 1.14 16 36 H 0.09 0.89 7.69 -51.93 -0.40 0.49 16 37 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 38 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.29 6.05 -51.93 -0.31 0.97 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.08 1.46 7.74 -51.93 -0.40 1.06 16 48 H 0.07 0.87 5.93 -51.93 -0.31 0.56 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 51 H 0.37 8.69 4.77 -40.82 -0.19 8.49 16 52 H 0.25 7.43 6.78 -40.82 -0.28 7.16 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -30.24 388.14 -9.44 -39.67 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -9.23 Total: 10.10 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -0.71 Total: -7.85 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.05 Total: -53.66 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.30 Total: -14.19 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.09 Total: 20.08 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.24 -9.44 -39.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037810915.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.535 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds