Wall clock time and date at job start Tue Mar 31 2020 14:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46807 * 2 1 4 4 H 1.08997 * 109.52790 * 54.92136 * 3 2 1 5 5 C 1.53197 * 109.49817 * 294.83632 * 3 2 1 6 6 N 1.46921 * 108.77527 * 185.41482 * 5 3 2 7 7 C 1.34779 * 120.63408 * 233.59396 * 6 5 3 8 8 O 1.21281 * 119.99577 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99994 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.46844 * 179.97438 * 9 7 6 11 11 C 1.53184 * 109.54368 * 294.81779 * 10 9 7 12 12 C 1.53098 * 109.15807 * 183.24308 * 11 10 9 13 13 O 1.42902 * 109.48664 * 57.47513 * 12 11 10 14 14 C 1.42895 * 114.09802 * 298.88646 * 13 12 11 15 15 C 1.53089 * 109.41815 * 61.15844 * 14 13 12 16 16 C 1.46927 * 118.73848 * 53.61343 * 6 5 3 17 17 C 1.53192 * 108.77485 * 306.39105 * 16 6 5 18 18 C 1.53036 * 109.31556 * 54.63581 * 17 16 6 19 19 H 1.08997 * 109.45248 * 178.62583 * 18 17 16 20 20 N 1.46500 * 109.46251 * 58.65158 * 18 17 16 21 21 C 1.36935 * 119.99795 * 84.93172 * 20 18 17 22 22 H 1.08006 * 119.99956 * 0.02562 * 21 20 18 23 23 C 1.38809 * 120.00104 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00002 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00116 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 239.99934 * 25 23 21 28 28 H 1.48500 * 109.47454 * 119.99927 * 25 23 21 29 29 H 1.09001 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46509 * 299.99921 * 1 2 3 31 31 H 1.08994 * 109.47229 * 59.99775 * 1 2 3 32 32 H 1.09004 * 109.46509 * 240.00079 * 2 1 3 33 33 H 1.08994 * 109.47229 * 120.00224 * 2 1 3 34 34 H 1.08995 * 109.58660 * 305.20366 * 5 3 2 35 35 H 1.08999 * 109.58011 * 65.48984 * 5 3 2 36 36 H 1.08996 * 109.46938 * 299.98787 * 9 7 6 37 37 H 1.08998 * 109.47687 * 59.99840 * 9 7 6 38 38 H 1.08996 * 109.54907 * 54.99582 * 10 9 7 39 39 H 1.09004 * 109.51902 * 303.06365 * 11 10 9 40 40 H 1.09000 * 109.52130 * 63.24320 * 11 10 9 41 41 H 1.08997 * 109.40845 * 297.49464 * 12 11 10 42 42 H 1.09007 * 109.49117 * 177.50733 * 12 11 10 43 43 H 1.09000 * 109.48275 * 301.17605 * 14 13 12 44 44 H 1.09006 * 109.49121 * 181.14801 * 14 13 12 45 45 H 1.08999 * 109.53059 * 182.48096 * 15 14 13 46 46 H 1.09005 * 109.52070 * 62.29308 * 15 14 13 47 47 H 1.08998 * 109.58977 * 66.17988 * 16 6 5 48 48 H 1.09002 * 109.59192 * 186.46007 * 16 6 5 49 49 H 1.09003 * 109.49985 * 294.68205 * 17 16 6 50 50 H 1.09003 * 109.49799 * 174.58853 * 17 16 6 51 51 H 0.96997 * 120.00022 * 264.93646 * 20 18 17 52 52 H 0.97004 * 120.00335 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 0.8407 5 6 1.6385 2.1268 -1.3106 6 7 2.2450 3.4643 -1.3507 7 6 1.4857 4.5565 -1.5681 8 8 0.2898 4.4404 -1.7332 9 6 2.1228 5.9216 -1.6070 10 6 1.0480 6.9788 -1.8679 11 6 0.4556 6.7732 -3.2655 12 6 -0.5601 7.8832 -3.5489 13 8 0.0785 9.1559 -3.4282 14 6 0.6084 9.4218 -2.1281 15 6 1.6726 8.3751 -1.7884 16 6 3.6952 3.5888 -1.1500 17 6 4.0736 2.8881 0.1587 18 6 3.5653 1.4450 0.1256 19 1 3.8546 0.9371 1.0456 20 7 4.1507 0.7475 -1.0220 21 6 5.3885 0.1718 -0.9147 22 1 5.9331 0.2317 0.0161 23 6 5.9434 -0.4886 -2.0022 24 7 5.2800 -0.5612 -3.1366 25 14 7.6317 -1.2745 -1.8556 26 1 8.1637 -1.0531 -0.4869 27 1 8.5507 -0.6621 -2.8484 28 1 7.5232 -2.7326 -2.1151 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.9965 1.5377 -2.1549 35 1 0.5531 2.2138 -1.3596 36 1 2.6074 6.1238 -0.6518 37 1 2.8648 5.9538 -2.4049 38 1 0.2594 6.8891 -1.1209 39 1 1.2526 6.8121 -4.0082 40 1 -0.0398 5.8035 -3.3121 41 1 -1.3780 7.8174 -2.8315 42 1 -0.9526 7.7677 -4.5593 43 1 -0.1943 9.3762 -1.3920 44 1 1.0578 10.4148 -2.1147 45 1 2.0467 8.5499 -0.7796 46 1 2.4949 8.4474 -2.5003 47 1 4.2208 3.1190 -1.9812 48 1 3.9674 4.6428 -1.0945 49 1 3.6193 3.4147 0.9980 50 1 5.1578 2.8894 0.2717 51 1 3.6614 0.6935 -1.8578 52 1 4.4035 -0.1528 -3.2129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037810915.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:39 Heat of formation + Delta-G solvation = -110.346474 kcal Electronic energy + Delta-G solvation = -29431.201116 eV Core-core repulsion = 25622.136068 eV Total energy + Delta-G solvation = -3809.065049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.61422 -40.31162 -39.18690 -36.11563 -35.69586 -35.41739 -33.47131 -31.98896 -30.99989 -30.66345 -29.31505 -26.44106 -25.45806 -25.16090 -24.50533 -24.13294 -22.26531 -21.19520 -20.72701 -19.79830 -19.18225 -18.22188 -17.18084 -17.06319 -16.93403 -16.82992 -16.49951 -16.06603 -15.65645 -15.61537 -15.43288 -14.99473 -14.94146 -14.81657 -14.54244 -14.24989 -13.98456 -13.68603 -13.54406 -13.21444 -13.09875 -13.02716 -12.78942 -12.72101 -12.57814 -12.27158 -12.21878 -12.17493 -11.91497 -11.87091 -11.68585 -11.65456 -11.56142 -11.44731 -11.21416 -11.06707 -10.88628 -10.69656 -10.40324 -9.63071 -9.02359 -8.30802 -5.23985 1.60134 1.61004 1.70339 1.81301 1.99132 2.74146 2.97998 3.43101 3.46887 3.65591 3.72503 3.74213 3.79394 3.92106 3.96995 4.03878 4.11136 4.19177 4.26482 4.28838 4.35167 4.37084 4.43542 4.47859 4.51696 4.55962 4.60319 4.70596 4.76023 4.77744 4.80493 4.85838 4.89673 4.93093 4.96696 4.99542 5.08270 5.13718 5.15738 5.17866 5.22905 5.25762 5.31565 5.41155 5.42687 5.60453 5.69481 6.27277 6.45099 6.55784 7.15379 7.16020 8.07365 8.19786 9.20476 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.003095 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.135778 B = 9045.502525 C = 9964.216009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.086 0.914 5 C 0.126 3.874 6 N -0.605 5.605 7 C 0.509 3.491 8 O -0.578 6.578 9 C -0.129 4.129 10 C -0.069 4.069 11 C -0.154 4.154 12 C 0.064 3.936 13 O -0.404 6.404 14 C 0.054 3.946 15 C -0.145 4.145 16 C 0.121 3.879 17 C -0.142 4.142 18 C 0.177 3.823 19 H 0.042 0.958 20 N -0.736 5.736 21 C -0.313 4.313 22 H 0.066 0.934 23 C -0.105 4.105 24 N -0.980 5.980 25 Si 1.127 2.873 26 H -0.271 1.271 27 H -0.295 1.295 28 H -0.298 1.298 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.039 0.961 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.110 0.890 49 H 0.079 0.921 50 H 0.065 0.935 51 H 0.358 0.642 52 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.438 17.492 7.274 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.112 4.112 4 H 0.104 0.896 5 C 0.003 3.997 6 N -0.337 5.337 7 C 0.300 3.700 8 O -0.458 6.458 9 C -0.168 4.168 10 C -0.088 4.088 11 C -0.192 4.192 12 C -0.012 4.012 13 O -0.324 6.324 14 C -0.022 4.022 15 C -0.183 4.183 16 C -0.002 4.002 17 C -0.182 4.182 18 C 0.068 3.932 19 H 0.060 0.940 20 N -0.379 5.379 21 C -0.445 4.445 22 H 0.084 0.916 23 C -0.296 4.296 24 N -0.629 5.629 25 Si 0.954 3.046 26 H -0.196 1.196 27 H -0.222 1.222 28 H -0.226 1.226 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.121 0.879 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.128 0.872 45 H 0.114 0.886 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.128 0.872 49 H 0.097 0.903 50 H 0.083 0.917 51 H 0.192 0.808 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.748 16.711 6.470 19.523 hybrid contribution -1.171 -0.074 0.366 1.229 sum -8.918 16.637 6.836 20.076 Atomic orbital electron populations 1.21777 0.94502 1.02000 1.01947 1.21338 0.96279 0.95312 1.01424 1.21663 0.95696 0.96350 0.97455 0.89587 1.21430 0.98710 0.82516 0.97083 1.48223 1.08855 1.06367 1.70250 1.21287 0.86618 0.87139 0.74992 1.90607 1.16372 1.87190 1.51679 1.21806 0.99643 0.89589 1.05791 1.20908 0.96810 0.93962 0.97133 1.22301 0.99864 0.99865 0.97172 1.22563 0.93950 0.82366 1.02352 1.87888 1.75764 1.35793 1.32908 1.22760 0.95789 0.99477 0.84155 1.22239 0.98994 0.93227 1.03826 1.21648 0.78623 1.01965 0.97937 1.22375 1.01349 0.97488 0.97013 1.20382 0.90984 0.91597 0.90201 0.93997 1.42597 1.18572 1.65562 1.11206 1.20352 0.95400 1.29653 0.99080 0.91633 1.26916 1.08458 1.01620 0.92654 1.70943 1.14610 1.49972 1.27337 0.82597 0.71495 0.75084 0.75474 1.19619 1.22245 1.22591 0.92132 0.91663 0.93194 0.94231 0.92086 0.94243 0.89581 0.86271 0.87949 0.91323 0.92040 0.91191 0.93049 0.88521 0.92730 0.87183 0.88590 0.90797 0.93694 0.87197 0.90279 0.91657 0.80822 0.94800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.67 71.98 0.70 -3.06 16 2 C -0.11 -3.34 5.19 30.60 0.16 -3.19 16 3 C -0.09 -2.88 2.14 -10.71 -0.02 -2.90 16 4 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 5 C 0.13 4.16 5.03 86.37 0.43 4.59 16 6 N -0.61 -18.04 2.97 -818.91 -2.43 -20.47 16 7 C 0.51 14.32 7.44 87.66 0.65 14.97 16 8 O -0.58 -19.55 13.40 -3.03 -0.04 -19.59 16 9 C -0.13 -2.51 3.53 29.85 0.11 -2.41 16 10 C -0.07 -1.33 1.92 -10.67 -0.02 -1.35 16 11 C -0.15 -3.45 5.13 30.69 0.16 -3.29 16 12 C 0.06 1.30 6.84 72.01 0.49 1.79 16 13 O -0.40 -8.54 10.77 -148.98 -1.60 -10.15 16 14 C 0.05 0.82 6.84 72.01 0.49 1.32 16 15 C -0.15 -2.06 5.43 30.68 0.17 -1.89 16 16 C 0.12 3.47 6.08 86.36 0.53 4.00 16 17 C -0.14 -4.25 5.78 30.67 0.18 -4.08 16 18 C 0.18 6.38 2.53 45.02 0.11 6.50 16 19 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 20 N -0.74 -33.93 3.72 -322.81 -1.20 -35.13 16 21 C -0.31 -16.46 9.93 84.03 0.83 -15.62 16 22 H 0.07 3.38 7.83 -2.91 -0.02 3.36 16 23 C -0.11 -5.89 5.50 84.86 0.47 -5.43 16 24 N -0.98 -59.97 13.70 21.65 0.30 -59.67 16 25 Si 1.13 51.05 29.92 68.60 2.05 53.10 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 27 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 28 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.05 1.33 6.70 -2.39 -0.02 1.31 16 32 H 0.04 1.51 7.70 -2.38 -0.02 1.49 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 1.52 6.64 -2.39 -0.02 1.51 16 35 H 0.09 2.87 5.73 -2.39 -0.01 2.85 16 36 H 0.12 1.73 7.69 -2.39 -0.02 1.71 16 37 H 0.10 1.86 7.94 -2.39 -0.02 1.84 16 38 H 0.07 1.47 7.96 -2.39 -0.02 1.45 16 39 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.07 1.92 6.05 -2.39 -0.01 1.91 16 41 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.04 1.64 7.74 -2.39 -0.02 1.62 16 48 H 0.11 2.31 5.93 -2.39 -0.01 2.30 16 49 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 51 H 0.36 17.82 4.77 -92.71 -0.44 17.37 16 52 H 0.24 14.83 6.78 -92.70 -0.63 14.21 16 Total: -1.00 -67.13 388.14 3.09 -64.04 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.59 Total: 37.92 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 5.43 Total: -10.05 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -3.34 Total: -115.27 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -1.64 Total: -29.74 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.05 Total: 53.10 kcal Total: -67.13 3.09 -64.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037810915.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.307 kcal (2) G-P(sol) polarization free energy of solvation -67.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds