Wall clock time and date at job start Tue Mar 31 2020 16:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 H 1.09001 * 109.47088 * 306.23258 * 3 2 1 5 5 O 1.42898 * 109.46829 * 66.23171 * 3 2 1 6 6 C 1.42904 * 114.00030 * 257.02101 * 5 3 2 7 7 C 1.50690 * 109.47187 * 186.23182 * 3 2 1 8 8 O 1.21279 * 120.00279 * 255.34246 * 7 3 2 9 9 N 1.37165 * 120.00208 * 75.33893 * 7 3 2 10 10 C 1.45939 * 118.14636 * 179.55797 * 9 7 3 11 11 C 1.56416 * 112.10619 * 267.64927 * 10 9 7 12 12 C 1.55138 * 112.10726 * 330.22207 * 11 10 9 13 13 C 1.50189 * 109.34804 * 312.64549 * 12 11 10 14 14 C 1.54756 * 109.30549 * 98.41420 * 13 12 11 15 15 C 1.58997 * 102.75627 * 158.46321 * 14 13 12 16 16 C 1.54862 * 103.54342 * 281.94275 * 15 14 13 17 17 N 1.47111 * 107.34765 * 340.58455 * 16 15 14 18 18 C 1.32200 * 130.46557 * 176.88442 * 17 16 15 19 19 H 1.08004 * 120.00387 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99963 * 359.97385 * 18 17 16 21 21 N 1.31617 * 119.99505 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00391 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46867 * 90.00618 * 22 20 18 24 24 H 1.48491 * 109.47444 * 210.00574 * 22 20 18 25 25 H 1.48496 * 109.47074 * 330.00816 * 22 20 18 26 26 C 1.54055 * 112.29713 * 51.36650 * 14 13 12 27 27 C 1.41641 * 116.02679 * 279.20327 * 14 13 12 28 28 H 1.08998 * 109.46997 * 180.88978 * 1 2 3 29 29 H 1.09000 * 109.47301 * 300.88232 * 1 2 3 30 30 H 1.08997 * 109.47374 * 60.88829 * 1 2 3 31 31 H 1.08997 * 109.46913 * 240.00236 * 2 1 3 32 32 H 1.08993 * 109.47364 * 120.00217 * 2 1 3 33 33 H 1.08998 * 109.47024 * 64.78438 * 6 5 3 34 34 H 1.08997 * 109.47223 * 184.78840 * 6 5 3 35 35 H 1.08999 * 109.46963 * 304.78651 * 6 5 3 36 36 H 1.11913 * 107.79899 * 29.11709 * 10 9 7 37 37 H 1.07654 * 103.73979 * 149.40722 * 10 9 7 38 38 H 1.14390 * 106.36623 * 93.69721 * 11 10 9 39 39 H 1.13128 * 104.48285 * 208.66046 * 11 10 9 40 40 H 1.07427 * 106.75947 * 71.79548 * 12 11 10 41 41 H 1.03715 * 106.58937 * 190.37606 * 12 11 10 42 42 H 1.06956 * 109.79727 * 338.97507 * 13 12 11 43 43 H 1.15512 * 107.20993 * 218.17197 * 13 12 11 44 44 H 1.13602 * 108.44818 * 166.09391 * 15 14 13 45 45 H 1.02236 * 114.27073 * 43.52335 * 15 14 13 46 46 H 1.08631 * 111.21357 * 225.05959 * 16 15 14 47 47 H 1.02228 * 108.42456 * 94.95887 * 16 15 14 48 48 H 0.97004 * 119.99585 * 179.97438 * 21 20 18 49 49 H 1.13204 * 113.09723 * 307.48997 * 26 14 13 50 50 H 1.10261 * 111.65836 * 183.58814 * 26 14 13 51 51 H 1.06874 * 112.08823 * 170.43273 * 27 14 13 52 52 H 1.13844 * 110.01368 * 293.56118 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5884 1.9876 -0.8289 5 8 1.6868 2.0726 1.2330 6 6 0.5747 2.9644 1.1324 7 6 3.5390 1.4454 -0.1542 8 8 4.2467 1.6754 0.8034 9 7 4.1031 1.1879 -1.3777 10 6 5.5585 1.2106 -1.4832 11 6 6.0963 2.6185 -1.9017 12 6 5.0816 3.3927 -2.7835 13 6 4.5701 2.4862 -3.8663 14 6 3.1970 1.9101 -3.4450 15 6 2.5523 1.4868 -4.8354 16 6 2.0590 2.8289 -5.4300 17 7 1.9570 3.7892 -4.3202 18 6 1.6358 5.0716 -4.3221 19 1 1.6128 5.6239 -3.3942 20 6 1.3282 5.7083 -5.5166 21 7 1.3558 5.0350 -6.6472 22 14 0.8738 7.5201 -5.5193 23 1 2.1018 8.3382 -5.6873 24 1 -0.0608 7.7944 -6.6402 25 1 0.2193 7.8682 -4.2326 26 6 2.2124 3.0096 -3.0034 27 6 3.2318 0.8074 -2.5567 28 1 -0.3633 -1.0275 0.0160 29 1 -0.3634 0.5275 0.8820 30 1 -0.3634 0.5000 -0.8978 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 -0.3209 2.4004 0.8717 34 1 0.4231 3.4655 2.0884 35 1 0.7736 3.7075 0.3602 36 1 5.9783 0.9164 -0.4884 37 1 5.7696 0.4965 -2.2606 38 1 6.3455 3.1699 -0.9310 39 1 7.0594 2.4008 -2.4539 40 1 4.2755 3.6910 -2.1391 41 1 5.5836 4.2206 -3.1553 42 1 5.2546 1.6780 -4.0154 43 1 4.4641 3.1235 -4.8238 44 1 1.6567 0.8195 -4.6280 45 1 3.1967 1.0089 -5.4691 46 1 1.0562 2.7337 -5.8365 47 1 2.7824 3.1906 -6.0552 48 1 1.1405 5.4799 -7.4819 49 1 2.6390 3.6953 -2.2102 50 1 1.2604 2.5836 -2.6457 51 1 2.2617 0.5643 -2.1796 52 1 3.6921 -0.0958 -3.0747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045921310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:07 Heat of formation + Delta-G solvation = -19.648743 kcal Electronic energy + Delta-G solvation = -31182.336416 eV Core-core repulsion = 27377.204316 eV Total energy + Delta-G solvation = -3805.132100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -40.60114 -38.82139 -37.53619 -35.62155 -33.94018 -33.11111 -32.67504 -30.40532 -29.10138 -28.45324 -26.89211 -25.93559 -25.46268 -24.36570 -23.39411 -22.03642 -20.87962 -20.20092 -18.82488 -18.54950 -17.37123 -16.81466 -16.50345 -15.84433 -15.47197 -15.14244 -14.80700 -14.58047 -14.52714 -14.11523 -13.91215 -13.71062 -13.45673 -13.36095 -13.17881 -12.61936 -12.47460 -12.39118 -12.08000 -12.04579 -11.88103 -11.72698 -11.57741 -11.39896 -11.32951 -10.98068 -10.80846 -10.77260 -10.74244 -10.63358 -10.25912 -10.13386 -10.02814 -9.90548 -9.74893 -9.64912 -9.40265 -9.18965 -8.75518 -8.44567 -6.93881 -5.67363 -2.89422 2.67900 2.80522 3.42250 3.47888 3.49175 3.77531 4.39207 4.52729 4.70458 4.74133 4.86904 4.90102 5.08055 5.14701 5.18801 5.20765 5.23670 5.28293 5.33173 5.38077 5.43302 5.51409 5.60831 5.62845 5.66669 5.68698 5.72327 5.78338 5.78624 5.81792 5.90131 5.92745 6.01705 6.11170 6.15288 6.23801 6.27613 6.37650 6.52468 6.59858 6.67563 6.77173 6.79963 6.97031 7.03117 7.27807 7.38873 7.60228 7.85348 8.18835 8.29620 9.22890 9.79133 10.63954 11.48293 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.004932 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.870563 B = 5675.938294 C = 6449.226663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.138 4.138 3 C 0.066 3.934 4 H 0.095 0.905 5 O -0.360 6.360 6 C 0.023 3.977 7 C 0.511 3.489 8 O -0.524 6.524 9 N -0.625 5.625 10 C 0.113 3.887 11 C -0.144 4.144 12 C -0.100 4.100 13 C -0.086 4.086 14 C -0.092 4.092 15 C -0.138 4.138 16 C 0.189 3.811 17 N -0.591 5.591 18 C -0.206 4.206 19 H 0.074 0.926 20 C -0.023 4.023 21 N -0.931 5.931 22 Si 0.903 3.097 23 H -0.292 1.292 24 H -0.293 1.293 25 H -0.285 1.285 26 C 0.113 3.887 27 C 0.140 3.860 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.086 0.914 44 H 0.045 0.955 45 H 0.067 0.933 46 H 0.044 0.956 47 H 0.052 0.948 48 H 0.250 0.750 49 H 0.054 0.946 50 H 0.024 0.976 51 H 0.087 0.913 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.584 -12.394 8.973 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.004 3.996 4 H 0.113 0.887 5 O -0.277 6.277 6 C -0.074 4.074 7 C 0.299 3.701 8 O -0.398 6.398 9 N -0.362 5.362 10 C -0.009 4.009 11 C -0.182 4.182 12 C -0.137 4.137 13 C -0.123 4.123 14 C -0.094 4.094 15 C -0.177 4.177 16 C 0.065 3.935 17 N -0.316 5.316 18 C -0.337 4.337 19 H 0.092 0.908 20 C -0.218 4.218 21 N -0.581 5.581 22 Si 0.735 3.265 23 H -0.220 1.220 24 H -0.220 1.220 25 H -0.211 1.211 26 C -0.011 4.011 27 C 0.020 3.980 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.070 0.930 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.041 0.959 51 H 0.105 0.895 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.005 -12.107 9.472 15.663 hybrid contribution -0.570 1.151 -0.383 1.340 sum 2.435 -10.956 9.089 14.441 Atomic orbital electron populations 1.21851 0.94671 1.02294 1.02430 1.21998 0.97244 0.94919 1.03444 1.22191 0.92584 0.95532 0.89272 0.88736 1.87981 1.50126 1.60348 1.29264 1.23031 0.88601 0.92830 1.02926 1.21235 0.90030 0.76241 0.82604 1.90649 1.63580 1.47316 1.38300 1.50039 1.07055 1.69970 1.09153 1.22662 0.79661 0.97617 1.00986 1.24592 0.98314 0.95905 0.99408 1.20331 0.98218 0.98060 0.97111 1.21776 0.93204 0.97932 0.99428 1.20399 0.97507 0.96113 0.95396 1.23535 0.99119 0.99927 0.95110 1.20311 0.98770 0.84594 0.89841 1.45049 1.82058 1.05358 0.99149 1.18089 1.37258 0.84678 0.93718 0.90772 1.24617 1.03838 0.97777 0.95603 1.69838 1.56477 1.34589 0.97208 0.86221 0.77893 0.85636 0.76778 1.21981 1.21950 1.21079 1.23985 0.93574 0.92312 0.91191 1.20847 0.94688 0.97047 0.85377 0.92102 0.91973 0.92237 0.90188 0.90544 0.93470 0.89412 0.93363 0.89812 0.91576 0.92126 0.92126 0.91307 0.92363 0.92682 0.89578 0.93613 0.91442 0.93833 0.92956 0.93926 0.92832 0.95860 0.89506 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.26 37.16 0.34 -1.11 16 2 C -0.14 -1.49 5.20 -26.73 -0.14 -1.63 16 3 C 0.07 0.89 1.82 -27.88 -0.05 0.84 16 4 H 0.10 1.28 4.46 -51.93 -0.23 1.05 16 5 O -0.36 -5.36 9.67 -54.66 -0.53 -5.89 16 6 C 0.02 0.27 10.45 101.05 1.06 1.32 16 7 C 0.51 7.93 7.04 -9.90 -0.07 7.86 16 8 O -0.52 -9.98 15.93 -13.87 -0.22 -10.20 16 9 N -0.62 -8.31 2.27 -170.97 -0.39 -8.70 16 10 C 0.11 1.42 5.63 -2.51 -0.01 1.41 16 11 C -0.14 -1.91 6.11 -23.76 -0.15 -2.05 16 12 C -0.10 -1.56 5.58 -27.00 -0.15 -1.71 16 13 C -0.09 -1.31 4.11 -27.21 -0.11 -1.42 16 14 C -0.09 -1.36 0.47 -154.83 -0.07 -1.44 16 15 C -0.14 -2.16 5.54 -22.41 -0.12 -2.29 16 16 C 0.19 4.12 4.89 -2.73 -0.01 4.10 16 17 N -0.59 -13.77 3.13 -165.33 -0.52 -14.29 16 18 C -0.21 -5.48 9.96 -17.18 -0.17 -5.65 16 19 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 20 C -0.02 -0.63 5.49 -17.43 -0.10 -0.73 16 21 N -0.93 -26.76 10.95 55.49 0.61 -26.15 16 22 Si 0.90 22.07 29.55 -169.99 -5.02 17.04 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.11 2.07 4.68 1.55 0.01 2.08 16 27 C 0.14 1.68 4.16 -6.37 -0.03 1.65 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.59 6.17 -51.93 -0.32 0.27 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.75 6.03 -51.93 -0.31 0.44 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.48 6.08 -51.93 -0.32 0.16 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.60 8.03 -51.93 -0.42 0.18 16 36 H 0.08 1.12 7.36 -50.24 -0.37 0.75 16 37 H 0.07 0.71 7.17 -52.68 -0.38 0.33 16 38 H 0.06 0.86 8.57 -48.71 -0.42 0.44 16 39 H 0.06 0.69 8.44 -49.50 -0.42 0.28 16 40 H 0.07 1.22 5.00 -52.80 -0.26 0.96 16 41 H 0.06 0.94 7.68 -54.75 -0.42 0.52 16 42 H 0.05 0.72 6.75 -53.06 -0.36 0.37 16 43 H 0.09 1.60 6.95 -47.99 -0.33 1.27 16 44 H 0.05 0.65 8.40 -49.20 -0.41 0.24 16 45 H 0.07 0.95 7.50 -55.48 -0.42 0.54 16 46 H 0.04 1.08 7.74 -52.14 -0.40 0.67 16 47 H 0.05 1.27 6.45 -55.49 -0.36 0.91 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.05 1.04 6.33 -49.45 -0.31 0.73 16 50 H 0.02 0.42 6.93 -51.21 -0.35 0.06 16 51 H 0.09 0.96 4.02 -53.10 -0.21 0.75 16 52 H 0.08 0.78 8.34 -49.05 -0.41 0.37 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -31.78 376.33 -8.85 -40.63 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.67 Total: 0.63 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 0.22 Total: 1.25 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.30 Total: -49.14 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.75 Total: -16.08 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.78 -8.85 -40.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045921310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.983 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds