Wall clock time and date at job start Tue Mar 31 2020 16:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 H 1.09001 * 109.47088 * 306.23258 * 3 2 1 5 5 O 1.42898 * 109.46829 * 66.23171 * 3 2 1 6 6 C 1.42904 * 114.00030 * 257.02101 * 5 3 2 7 7 C 1.50690 * 109.47187 * 186.23182 * 3 2 1 8 8 O 1.21279 * 120.00279 * 255.34246 * 7 3 2 9 9 N 1.37165 * 120.00208 * 75.33893 * 7 3 2 10 10 C 1.45939 * 118.14636 * 179.55797 * 9 7 3 11 11 C 1.56416 * 112.10619 * 267.64927 * 10 9 7 12 12 C 1.55138 * 112.10726 * 330.22207 * 11 10 9 13 13 C 1.50189 * 109.34804 * 312.64549 * 12 11 10 14 14 C 1.54756 * 109.30549 * 98.41420 * 13 12 11 15 15 C 1.58997 * 102.75627 * 158.46321 * 14 13 12 16 16 C 1.54862 * 103.54342 * 281.94275 * 15 14 13 17 17 N 1.47111 * 107.34765 * 340.58455 * 16 15 14 18 18 C 1.32200 * 130.46557 * 176.88442 * 17 16 15 19 19 H 1.08004 * 120.00387 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99963 * 359.97385 * 18 17 16 21 21 N 1.31617 * 119.99505 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00391 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46867 * 90.00618 * 22 20 18 24 24 H 1.48491 * 109.47444 * 210.00574 * 22 20 18 25 25 H 1.48496 * 109.47074 * 330.00816 * 22 20 18 26 26 C 1.54055 * 112.29713 * 51.36650 * 14 13 12 27 27 C 1.41641 * 116.02679 * 279.20327 * 14 13 12 28 28 H 1.08998 * 109.46997 * 180.88978 * 1 2 3 29 29 H 1.09000 * 109.47301 * 300.88232 * 1 2 3 30 30 H 1.08997 * 109.47374 * 60.88829 * 1 2 3 31 31 H 1.08997 * 109.46913 * 240.00236 * 2 1 3 32 32 H 1.08993 * 109.47364 * 120.00217 * 2 1 3 33 33 H 1.08998 * 109.47024 * 64.78438 * 6 5 3 34 34 H 1.08997 * 109.47223 * 184.78840 * 6 5 3 35 35 H 1.08999 * 109.46963 * 304.78651 * 6 5 3 36 36 H 1.11913 * 107.79899 * 29.11709 * 10 9 7 37 37 H 1.07654 * 103.73979 * 149.40722 * 10 9 7 38 38 H 1.14390 * 106.36623 * 93.69721 * 11 10 9 39 39 H 1.13128 * 104.48285 * 208.66046 * 11 10 9 40 40 H 1.07427 * 106.75947 * 71.79548 * 12 11 10 41 41 H 1.03715 * 106.58937 * 190.37606 * 12 11 10 42 42 H 1.06956 * 109.79727 * 338.97507 * 13 12 11 43 43 H 1.15512 * 107.20993 * 218.17197 * 13 12 11 44 44 H 1.13602 * 108.44818 * 166.09391 * 15 14 13 45 45 H 1.02236 * 114.27073 * 43.52335 * 15 14 13 46 46 H 1.08631 * 111.21357 * 225.05959 * 16 15 14 47 47 H 1.02228 * 108.42456 * 94.95887 * 16 15 14 48 48 H 0.97004 * 119.99585 * 179.97438 * 21 20 18 49 49 H 1.13204 * 113.09723 * 307.48997 * 26 14 13 50 50 H 1.10261 * 111.65836 * 183.58814 * 26 14 13 51 51 H 1.06874 * 112.08823 * 170.43273 * 27 14 13 52 52 H 1.13844 * 110.01368 * 293.56118 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5884 1.9876 -0.8289 5 8 1.6868 2.0726 1.2330 6 6 0.5747 2.9644 1.1324 7 6 3.5390 1.4454 -0.1542 8 8 4.2467 1.6754 0.8034 9 7 4.1031 1.1879 -1.3777 10 6 5.5585 1.2106 -1.4832 11 6 6.0963 2.6185 -1.9017 12 6 5.0816 3.3927 -2.7835 13 6 4.5701 2.4862 -3.8663 14 6 3.1970 1.9101 -3.4450 15 6 2.5523 1.4868 -4.8354 16 6 2.0590 2.8289 -5.4300 17 7 1.9570 3.7892 -4.3202 18 6 1.6358 5.0716 -4.3221 19 1 1.6128 5.6239 -3.3942 20 6 1.3282 5.7083 -5.5166 21 7 1.3558 5.0350 -6.6472 22 14 0.8738 7.5201 -5.5193 23 1 2.1018 8.3382 -5.6873 24 1 -0.0608 7.7944 -6.6402 25 1 0.2193 7.8682 -4.2326 26 6 2.2124 3.0096 -3.0034 27 6 3.2318 0.8074 -2.5567 28 1 -0.3633 -1.0275 0.0160 29 1 -0.3634 0.5275 0.8820 30 1 -0.3634 0.5000 -0.8978 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 -0.3209 2.4004 0.8717 34 1 0.4231 3.4655 2.0884 35 1 0.7736 3.7075 0.3602 36 1 5.9783 0.9164 -0.4884 37 1 5.7696 0.4965 -2.2606 38 1 6.3455 3.1699 -0.9310 39 1 7.0594 2.4008 -2.4539 40 1 4.2755 3.6910 -2.1391 41 1 5.5836 4.2206 -3.1553 42 1 5.2546 1.6780 -4.0154 43 1 4.4641 3.1235 -4.8238 44 1 1.6567 0.8195 -4.6280 45 1 3.1967 1.0089 -5.4691 46 1 1.0562 2.7337 -5.8365 47 1 2.7824 3.1906 -6.0552 48 1 1.1405 5.4799 -7.4819 49 1 2.6390 3.6953 -2.2102 50 1 1.2604 2.5836 -2.6457 51 1 2.2617 0.5643 -2.1796 52 1 3.6921 -0.0958 -3.0747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045921310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:05 Heat of formation + Delta-G solvation = -38.133913 kcal Electronic energy + Delta-G solvation = -31183.137993 eV Core-core repulsion = 27377.204316 eV Total energy + Delta-G solvation = -3805.933677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.77722 -40.07825 -38.68448 -37.09476 -34.97549 -34.76388 -33.68878 -32.14165 -30.56855 -29.54836 -28.02019 -27.39947 -26.64764 -25.64098 -24.79512 -23.01013 -22.31897 -21.65128 -19.99917 -19.72797 -18.64115 -18.45297 -17.62224 -17.02763 -16.68616 -16.52902 -16.36394 -16.08287 -15.54734 -15.40967 -15.17267 -15.01009 -14.75549 -14.49202 -14.23460 -14.03033 -13.81452 -13.49201 -13.41743 -13.10834 -13.01796 -12.94547 -12.86921 -12.75535 -12.63096 -12.47461 -12.32275 -12.12173 -12.06293 -11.94450 -11.74372 -11.67294 -11.35696 -11.24698 -11.12219 -10.97217 -10.90388 -10.73373 -10.30070 -9.55890 -8.92395 -7.77102 -4.97201 1.44110 1.45245 1.52079 1.52443 1.76697 2.55190 2.77830 3.32918 3.41230 3.57049 3.64795 3.72294 3.84112 3.91204 4.00413 4.07582 4.11373 4.17686 4.28943 4.38283 4.41058 4.43867 4.45758 4.55023 4.59343 4.61407 4.63543 4.73996 4.76039 4.78071 4.83975 4.87793 4.90357 4.96213 5.03287 5.07734 5.15647 5.26716 5.28489 5.38598 5.40241 5.44865 5.51310 5.59251 5.68408 5.73620 5.97166 6.02322 6.25467 6.30984 7.16008 7.18556 7.78500 8.63804 9.37270 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.004932 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.870563 B = 5675.938294 C = 6449.226663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.133 4.133 3 C 0.065 3.935 4 H 0.092 0.908 5 O -0.385 6.385 6 C 0.020 3.980 7 C 0.505 3.495 8 O -0.568 6.568 9 N -0.619 5.619 10 C 0.113 3.887 11 C -0.139 4.139 12 C -0.100 4.100 13 C -0.077 4.077 14 C -0.073 4.073 15 C -0.119 4.119 16 C 0.191 3.809 17 N -0.612 5.612 18 C -0.201 4.201 19 H 0.071 0.929 20 C -0.082 4.082 21 N -0.958 5.958 22 Si 0.956 3.044 23 H -0.296 1.296 24 H -0.298 1.298 25 H -0.276 1.276 26 C 0.118 3.882 27 C 0.134 3.866 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.008 0.992 47 H 0.020 0.980 48 H 0.242 0.758 49 H 0.036 0.964 50 H 0.037 0.963 51 H 0.101 0.899 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -15.306 9.458 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.170 4.170 3 C 0.004 3.996 4 H 0.110 0.890 5 O -0.304 6.304 6 C -0.076 4.076 7 C 0.294 3.706 8 O -0.447 6.447 9 N -0.354 5.354 10 C -0.009 4.009 11 C -0.177 4.177 12 C -0.138 4.138 13 C -0.114 4.114 14 C -0.075 4.075 15 C -0.158 4.158 16 C 0.067 3.933 17 N -0.337 5.337 18 C -0.333 4.333 19 H 0.089 0.911 20 C -0.274 4.274 21 N -0.611 5.611 22 Si 0.787 3.213 23 H -0.224 1.224 24 H -0.225 1.225 25 H -0.201 1.201 26 C -0.005 4.005 27 C 0.015 3.985 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.108 0.892 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.026 0.974 47 H 0.038 0.962 48 H 0.051 0.949 49 H 0.055 0.945 50 H 0.055 0.945 51 H 0.119 0.881 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.211 -15.037 9.969 18.325 hybrid contribution -0.611 2.116 -0.489 2.256 sum 2.600 -12.922 9.480 16.236 Atomic orbital electron populations 1.21846 0.93534 1.03443 1.02217 1.22007 0.98149 0.92765 1.04110 1.22316 0.91360 0.97244 0.88688 0.89011 1.87946 1.51217 1.60952 1.30247 1.23159 0.88561 0.92548 1.03333 1.21687 0.90763 0.75451 0.82722 1.90626 1.64628 1.49490 1.39913 1.50099 1.07610 1.68925 1.08783 1.22748 0.79075 0.97445 1.01638 1.24465 0.98811 0.96006 0.98424 1.20230 0.97980 0.98341 0.97260 1.21713 0.94322 0.98280 0.97119 1.20330 0.96011 0.95629 0.95501 1.23384 1.00697 0.96582 0.95156 1.20107 0.96193 0.87545 0.89465 1.45312 1.81226 1.05157 1.01957 1.18354 1.35144 0.86484 0.93339 0.91137 1.25243 1.05495 1.01025 0.95675 1.70017 1.58379 1.35464 0.97233 0.85360 0.77206 0.82011 0.76693 1.22362 1.22541 1.20109 1.24149 0.95080 0.92661 0.88606 1.21060 0.95992 0.97073 0.84358 0.90268 0.92576 0.92092 0.88133 0.91196 0.91543 0.88156 0.94688 0.90669 0.88233 0.93930 0.89331 0.93918 0.93831 0.89244 0.93665 0.90743 0.89060 0.97418 0.96156 0.94908 0.94541 0.94515 0.88064 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.26 71.98 0.67 -1.72 16 2 C -0.13 -2.46 5.20 30.60 0.16 -2.30 16 3 C 0.07 1.66 1.82 29.85 0.05 1.71 16 4 H 0.09 2.34 4.46 -2.39 -0.01 2.33 16 5 O -0.39 -11.27 9.67 -130.40 -1.26 -12.53 16 6 C 0.02 0.46 10.45 113.37 1.19 1.64 16 7 C 0.51 14.92 7.04 87.27 0.61 15.54 16 8 O -0.57 -21.55 15.93 15.55 0.25 -21.30 16 9 N -0.62 -14.52 2.27 -811.83 -1.84 -16.37 16 10 C 0.11 2.46 5.63 87.68 0.49 2.96 16 11 C -0.14 -3.42 6.11 32.52 0.20 -3.22 16 12 C -0.10 -3.09 5.58 30.42 0.17 -2.92 16 13 C -0.08 -2.18 4.11 30.29 0.12 -2.06 16 14 C -0.07 -1.94 0.47 -52.39 -0.02 -1.97 16 15 C -0.12 -3.35 5.54 33.39 0.19 -3.17 16 16 C 0.19 8.39 4.89 86.90 0.42 8.81 16 17 N -0.61 -28.94 3.13 -676.97 -2.12 -31.06 16 18 C -0.20 -10.93 9.96 84.78 0.84 -10.09 16 19 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 20 C -0.08 -4.66 5.49 84.86 0.47 -4.19 16 21 N -0.96 -57.14 10.95 21.65 0.24 -56.90 16 22 Si 0.96 46.64 29.55 68.60 2.03 48.67 16 23 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 24 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 C 0.12 4.20 4.68 84.98 0.40 4.60 16 27 C 0.13 2.55 4.16 82.08 0.34 2.89 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.94 6.17 -2.39 -0.01 0.93 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.43 6.03 -2.39 -0.01 1.41 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.25 6.08 -2.39 -0.01 1.23 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.03 0.88 8.03 -2.39 -0.02 0.86 16 36 H 0.08 1.84 7.36 -0.80 -0.01 1.84 16 37 H 0.10 1.54 7.17 -3.09 -0.02 1.51 16 38 H 0.04 1.20 8.57 0.64 0.01 1.20 16 39 H 0.09 1.73 8.44 -0.10 0.00 1.73 16 40 H 0.04 1.53 5.00 -3.21 -0.02 1.52 16 41 H 0.04 1.44 7.68 -5.04 -0.04 1.40 16 42 H 0.09 1.94 6.75 -3.45 -0.02 1.92 16 43 H 0.04 1.67 6.95 1.31 0.01 1.68 16 44 H 0.07 1.76 8.40 0.17 0.00 1.76 16 45 H 0.09 2.18 7.50 -5.73 -0.04 2.13 16 46 H 0.01 0.39 7.74 -2.58 -0.02 0.37 16 47 H 0.02 1.01 6.45 -5.73 -0.04 0.97 16 48 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 49 H 0.04 1.44 6.33 -0.06 0.00 1.44 16 50 H 0.04 1.24 6.93 -1.71 -0.01 1.23 16 51 H 0.10 1.71 4.02 -3.49 -0.01 1.70 16 52 H 0.13 1.50 8.34 0.31 0.00 1.50 16 Total: -1.00 -74.30 376.33 4.55 -69.75 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.96 Total: 13.23 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 6.30 Total: 6.51 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -3.73 Total: -104.33 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.01 Total: -33.84 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -74.30 4.55 -69.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045921310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.617 kcal (2) G-P(sol) polarization free energy of solvation -74.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds