Wall clock time and date at job start Tue Mar 31 2020 14:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46586 * 2 1 4 4 C 1.52998 * 109.47514 * 120.00011 * 2 1 3 5 5 H 1.08999 * 109.48655 * 299.97584 * 4 2 1 6 6 C 1.53097 * 109.48389 * 180.02562 * 4 2 1 7 7 C 1.53174 * 109.15968 * 182.49968 * 6 4 2 8 8 H 1.09003 * 109.54223 * 296.93538 * 7 6 4 9 9 C 1.50694 * 109.54714 * 176.75787 * 7 6 4 10 10 O 1.21279 * 119.99987 * 0.17449 * 9 7 6 11 11 N 1.34783 * 120.00272 * 180.17657 * 9 7 6 12 12 C 1.46499 * 119.99918 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.46882 * 180.02562 * 12 11 9 14 14 H 1.08997 * 112.85474 * 43.80022 * 13 12 11 15 15 C 1.53781 * 113.61406 * 174.99788 * 13 12 11 16 16 C 1.53786 * 87.17350 * 140.02181 * 15 13 12 17 17 H 1.08993 * 113.61491 * 89.15923 * 16 15 13 18 18 N 1.46501 * 113.61366 * 220.06429 * 16 15 13 19 19 C 1.36934 * 120.00051 * 204.99850 * 18 16 15 20 20 H 1.08001 * 119.99970 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99968 * 179.97438 * 19 18 16 22 22 N 1.31613 * 120.00219 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99805 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47311 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47162 * 119.99914 * 23 21 19 26 26 H 1.48495 * 109.47458 * 240.00006 * 23 21 19 27 27 C 1.53782 * 113.68747 * 272.53320 * 13 12 11 28 28 C 1.53176 * 109.11151 * 56.84353 * 7 6 4 29 29 C 1.53091 * 109.16512 * 303.07015 * 28 7 6 30 30 O 1.42903 * 109.41851 * 57.60352 * 29 28 7 31 31 H 1.09003 * 109.46796 * 299.99395 * 1 2 3 32 32 H 1.08993 * 109.47482 * 59.99603 * 1 2 3 33 33 H 1.09003 * 109.46720 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46796 * 240.00605 * 2 1 3 35 35 H 1.09003 * 109.46532 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46860 * 300.00150 * 3 2 1 37 37 H 1.08999 * 109.46986 * 60.00253 * 3 2 1 38 38 H 1.09000 * 109.59996 * 62.54527 * 6 4 2 39 39 H 1.09007 * 109.45232 * 302.35880 * 6 4 2 40 40 H 0.96999 * 119.99505 * 359.97438 * 11 9 7 41 41 H 1.08995 * 109.47324 * 59.99404 * 12 11 9 42 42 H 1.09003 * 109.46872 * 299.99751 * 12 11 9 43 43 H 1.09002 * 113.61445 * 254.61180 * 15 13 12 44 44 H 1.09002 * 113.61408 * 25.42911 * 15 13 12 45 45 H 0.97002 * 119.99797 * 24.99368 * 18 16 15 46 46 H 0.97004 * 119.99679 * 179.97438 * 22 21 19 47 47 H 1.08997 * 113.61668 * 334.55355 * 27 13 12 48 48 H 1.08994 * 113.61387 * 105.46089 * 27 13 12 49 49 H 1.09007 * 109.52139 * 62.96882 * 28 7 6 50 50 H 1.09002 * 109.52711 * 183.15981 * 28 7 6 51 51 H 1.09004 * 109.48322 * 177.59323 * 29 28 7 52 52 H 1.09005 * 109.47614 * 297.61177 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0402 -0.7212 1.2492 5 1 1.6774 -0.2074 2.1394 6 6 3.5711 -0.7208 1.2497 7 6 4.0736 -1.4982 2.4701 8 1 3.7533 -0.9932 3.3814 9 6 5.5784 -1.5714 2.4366 10 8 6.1909 -1.0505 1.5286 11 7 6.2438 -2.2157 3.4158 12 6 7.7067 -2.2863 3.3836 13 6 8.2065 -3.0676 4.6004 14 1 7.6241 -3.9685 4.7935 15 6 9.7259 -3.3049 4.5985 16 6 9.6951 -3.0230 6.1100 17 1 9.5204 -3.9116 6.7164 18 7 10.8296 -2.2248 6.5813 19 6 11.2331 -2.3125 7.8869 20 1 10.7146 -2.9698 8.5693 21 6 12.3084 -1.5567 8.3333 22 7 12.9405 -0.7561 7.5016 23 14 12.8592 -1.6769 10.1142 24 1 11.9915 -2.6415 10.8367 25 1 14.2678 -2.1438 10.1662 26 1 12.7564 -0.3415 10.7554 27 6 8.4236 -2.1952 5.8481 28 6 3.4909 -2.9144 2.4373 29 6 1.9631 -2.8283 2.3920 30 8 1.5637 -2.0685 1.2495 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4426 -0.0005 36 1 1.6765 1.9564 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 3.9365 0.3051 1.2956 39 1 3.9346 -1.1974 0.3392 40 1 5.7540 -2.6320 4.1422 41 1 8.1197 -1.2779 3.4040 42 1 8.0261 -2.7913 2.4718 43 1 10.0076 -4.3284 4.3509 44 1 10.2831 -2.5626 4.0271 45 1 11.2950 -1.6343 5.9684 46 1 13.6916 -0.2277 7.8137 47 1 8.6249 -1.1487 5.6196 48 1 7.6540 -2.3229 6.6093 49 1 3.8527 -3.4367 1.5515 50 1 3.7989 -3.4559 3.3318 51 1 1.5442 -3.8325 2.3254 52 1 1.5995 -2.3421 3.2973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086247013.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:13 Heat of formation + Delta-G solvation = -81.400261 kcal Electronic energy + Delta-G solvation = -27575.920252 eV Core-core repulsion = 23768.110405 eV Total energy + Delta-G solvation = -3807.809847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.67908 -39.28362 -38.37741 -35.77458 -34.72375 -34.05169 -33.25259 -30.48493 -30.27794 -27.96089 -27.35802 -25.61532 -25.10934 -24.08487 -23.72630 -21.74110 -21.06859 -20.55001 -20.04201 -19.03793 -17.38114 -17.03934 -16.80087 -16.39031 -15.99254 -15.55821 -14.99291 -14.87007 -14.74253 -14.52589 -14.23061 -14.10855 -13.71999 -13.60290 -13.43956 -13.06739 -12.88740 -12.85585 -12.49731 -12.10563 -11.93148 -11.84503 -11.73958 -11.58693 -11.42913 -11.39286 -11.26088 -11.16263 -10.87455 -10.87075 -10.61066 -10.54185 -10.27434 -10.14383 -10.05014 -9.85379 -9.67116 -9.45728 -9.05007 -8.89472 -6.98683 -5.80680 -3.09626 2.53832 3.07540 3.36804 3.40578 3.46060 3.48522 4.19023 4.32850 4.39156 4.48834 4.56083 4.63210 4.68193 4.87318 4.89901 4.93613 4.94820 5.01567 5.10495 5.19968 5.20969 5.25058 5.30678 5.31520 5.44188 5.45180 5.48601 5.53175 5.58848 5.61134 5.73529 5.78213 5.80256 5.83248 5.91066 5.91973 5.98531 6.04285 6.06520 6.23252 6.29121 6.33440 6.43212 6.56229 6.79995 6.89056 7.08529 7.42809 7.67173 8.14590 8.37804 9.48945 10.07220 10.41334 11.41720 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.001848 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.300684 B =15145.494429 C =15373.188771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.151 4.151 4 C 0.096 3.904 5 H 0.058 0.942 6 C -0.130 4.130 7 C -0.110 4.110 8 H 0.097 0.903 9 C 0.515 3.485 10 O -0.540 6.540 11 N -0.724 5.724 12 C 0.131 3.869 13 C -0.127 4.127 14 H 0.087 0.913 15 C -0.142 4.142 16 C 0.166 3.834 17 H 0.075 0.925 18 N -0.713 5.713 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.014 4.014 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.161 4.161 28 C -0.147 4.147 29 C 0.064 3.936 30 O -0.377 6.377 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.399 0.601 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.077 0.923 48 H 0.053 0.947 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.097 0.903 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.441 -2.603 -13.468 29.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.208 4.208 4 C 0.038 3.962 5 H 0.076 0.924 6 C -0.168 4.168 7 C -0.132 4.132 8 H 0.115 0.885 9 C 0.301 3.699 10 O -0.417 6.417 11 N -0.375 5.375 12 C 0.008 3.992 13 C -0.146 4.146 14 H 0.106 0.894 15 C -0.182 4.182 16 C 0.054 3.946 17 H 0.093 0.907 18 N -0.350 5.350 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.202 4.202 28 C -0.185 4.185 29 C -0.013 4.013 30 O -0.296 6.296 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.233 0.767 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.072 0.928 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.115 0.885 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.010 -2.330 -14.062 29.660 hybrid contribution 0.541 0.080 1.461 1.560 sum -25.469 -2.250 -12.602 28.505 Atomic orbital electron populations 1.21770 0.94586 1.02333 1.01385 1.21087 0.96446 0.95766 0.97311 1.21901 1.01762 0.94985 1.02150 1.22192 0.92571 0.83081 0.98366 0.92401 1.22098 0.95198 1.01617 0.97889 1.21395 0.92324 0.98168 1.01302 0.88499 1.20502 0.89587 0.77995 0.81839 1.90707 1.69839 1.45973 1.35201 1.46075 1.08198 1.56583 1.26651 1.21440 0.78512 1.00845 0.98375 1.22629 0.97688 0.99106 0.95184 0.89444 1.23448 0.93317 1.01291 1.00159 1.21546 0.87791 0.93735 0.91566 0.90668 1.42418 1.33750 1.49210 1.09660 1.19350 1.10699 1.20508 0.86998 0.91033 1.24778 0.98654 0.99504 0.98032 1.69671 1.23945 1.30333 1.34002 0.86116 0.78255 0.77204 0.84590 1.20537 1.21830 1.21855 1.23978 1.01090 0.99786 0.95352 1.22209 0.97099 0.95420 1.03800 1.22541 0.93133 0.96666 0.88913 1.87925 1.74457 1.23452 1.43739 0.92960 0.92785 0.91864 0.90359 0.91831 0.92078 0.92499 0.89829 0.90140 0.76694 0.91256 0.91818 0.92016 0.90125 0.78062 0.93481 0.90392 0.92819 0.90336 0.90246 0.88469 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.05 37.16 0.34 -0.61 16 2 C -0.09 -0.64 2.72 -90.61 -0.25 -0.89 16 3 C -0.15 -0.99 8.84 37.16 0.33 -0.66 16 4 C 0.10 0.76 2.22 -26.68 -0.06 0.70 16 5 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 6 C -0.13 -1.19 3.59 -26.59 -0.10 -1.29 16 7 C -0.11 -0.95 2.61 -91.59 -0.24 -1.19 16 8 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 9 C 0.52 6.20 7.16 -10.99 -0.08 6.12 16 10 O -0.54 -8.77 15.97 5.56 0.09 -8.68 16 11 N -0.72 -7.82 5.46 -60.30 -0.33 -8.15 16 12 C 0.13 1.70 5.51 -4.04 -0.02 1.68 16 13 C -0.13 -1.65 3.75 -89.81 -0.34 -1.98 16 14 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 15 C -0.14 -2.24 7.39 -25.92 -0.19 -2.43 16 16 C 0.17 3.16 4.49 -67.02 -0.30 2.86 16 17 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 18 N -0.71 -17.67 5.40 -52.54 -0.28 -17.96 16 19 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 23 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C -0.16 -2.60 7.44 -25.82 -0.19 -2.79 16 28 C -0.15 -1.02 5.30 -26.59 -0.14 -1.16 16 29 C 0.06 0.42 6.84 37.20 0.25 0.67 16 30 O -0.38 -3.28 9.73 -35.23 -0.34 -3.62 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.46 7.68 -51.93 -0.40 0.06 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.46 6.49 -51.93 -0.34 0.12 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.80 6.58 -51.93 -0.34 0.46 16 39 H 0.08 0.87 8.03 -51.93 -0.42 0.46 16 40 H 0.40 3.27 7.97 -40.82 -0.33 2.95 16 41 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.08 1.34 8.08 -51.93 -0.42 0.92 16 45 H 0.39 10.21 7.92 -40.82 -0.32 9.89 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 48 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.08 0.41 7.68 -51.93 -0.40 0.02 16 51 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 407.29 15.07 6.14 6.14 Total: -1.00 -32.40 407.29 -9.92 -42.32 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -9.66 Total: 8.45 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.23 Total: -8.33 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.11 Total: -53.48 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.25 Total: -12.30 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.40 -9.92 -42.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086247013.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.077 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds