Wall clock time and date at job start Tue Mar 31 2020 14:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46586 * 2 1 4 4 C 1.52998 * 109.47514 * 120.00011 * 2 1 3 5 5 H 1.08999 * 109.48655 * 299.97584 * 4 2 1 6 6 C 1.53097 * 109.48389 * 180.02562 * 4 2 1 7 7 C 1.53174 * 109.15968 * 182.49968 * 6 4 2 8 8 H 1.09003 * 109.54223 * 296.93538 * 7 6 4 9 9 C 1.50694 * 109.54714 * 176.75787 * 7 6 4 10 10 O 1.21279 * 119.99987 * 0.17449 * 9 7 6 11 11 N 1.34783 * 120.00272 * 180.17657 * 9 7 6 12 12 C 1.46499 * 119.99918 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.46882 * 180.02562 * 12 11 9 14 14 H 1.08997 * 112.85474 * 43.80022 * 13 12 11 15 15 C 1.53781 * 113.61406 * 174.99788 * 13 12 11 16 16 C 1.53786 * 87.17350 * 140.02181 * 15 13 12 17 17 H 1.08993 * 113.61491 * 89.15923 * 16 15 13 18 18 N 1.46501 * 113.61366 * 220.06429 * 16 15 13 19 19 C 1.36934 * 120.00051 * 204.99850 * 18 16 15 20 20 H 1.08001 * 119.99970 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99968 * 179.97438 * 19 18 16 22 22 N 1.31613 * 120.00219 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99805 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47311 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47162 * 119.99914 * 23 21 19 26 26 H 1.48495 * 109.47458 * 240.00006 * 23 21 19 27 27 C 1.53782 * 113.68747 * 272.53320 * 13 12 11 28 28 C 1.53176 * 109.11151 * 56.84353 * 7 6 4 29 29 C 1.53091 * 109.16512 * 303.07015 * 28 7 6 30 30 O 1.42903 * 109.41851 * 57.60352 * 29 28 7 31 31 H 1.09003 * 109.46796 * 299.99395 * 1 2 3 32 32 H 1.08993 * 109.47482 * 59.99603 * 1 2 3 33 33 H 1.09003 * 109.46720 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46796 * 240.00605 * 2 1 3 35 35 H 1.09003 * 109.46532 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46860 * 300.00150 * 3 2 1 37 37 H 1.08999 * 109.46986 * 60.00253 * 3 2 1 38 38 H 1.09000 * 109.59996 * 62.54527 * 6 4 2 39 39 H 1.09007 * 109.45232 * 302.35880 * 6 4 2 40 40 H 0.96999 * 119.99505 * 359.97438 * 11 9 7 41 41 H 1.08995 * 109.47324 * 59.99404 * 12 11 9 42 42 H 1.09003 * 109.46872 * 299.99751 * 12 11 9 43 43 H 1.09002 * 113.61445 * 254.61180 * 15 13 12 44 44 H 1.09002 * 113.61408 * 25.42911 * 15 13 12 45 45 H 0.97002 * 119.99797 * 24.99368 * 18 16 15 46 46 H 0.97004 * 119.99679 * 179.97438 * 22 21 19 47 47 H 1.08997 * 113.61668 * 334.55355 * 27 13 12 48 48 H 1.08994 * 113.61387 * 105.46089 * 27 13 12 49 49 H 1.09007 * 109.52139 * 62.96882 * 28 7 6 50 50 H 1.09002 * 109.52711 * 183.15981 * 28 7 6 51 51 H 1.09004 * 109.48322 * 177.59323 * 29 28 7 52 52 H 1.09005 * 109.47614 * 297.61177 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0402 -0.7212 1.2492 5 1 1.6774 -0.2074 2.1394 6 6 3.5711 -0.7208 1.2497 7 6 4.0736 -1.4982 2.4701 8 1 3.7533 -0.9932 3.3814 9 6 5.5784 -1.5714 2.4366 10 8 6.1909 -1.0505 1.5286 11 7 6.2438 -2.2157 3.4158 12 6 7.7067 -2.2863 3.3836 13 6 8.2065 -3.0676 4.6004 14 1 7.6241 -3.9685 4.7935 15 6 9.7259 -3.3049 4.5985 16 6 9.6951 -3.0230 6.1100 17 1 9.5204 -3.9116 6.7164 18 7 10.8296 -2.2248 6.5813 19 6 11.2331 -2.3125 7.8869 20 1 10.7146 -2.9698 8.5693 21 6 12.3084 -1.5567 8.3333 22 7 12.9405 -0.7561 7.5016 23 14 12.8592 -1.6769 10.1142 24 1 11.9915 -2.6415 10.8367 25 1 14.2678 -2.1438 10.1662 26 1 12.7564 -0.3415 10.7554 27 6 8.4236 -2.1952 5.8481 28 6 3.4909 -2.9144 2.4373 29 6 1.9631 -2.8283 2.3920 30 8 1.5637 -2.0685 1.2495 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4426 -0.0005 36 1 1.6765 1.9564 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 3.9365 0.3051 1.2956 39 1 3.9346 -1.1974 0.3392 40 1 5.7540 -2.6320 4.1422 41 1 8.1197 -1.2779 3.4040 42 1 8.0261 -2.7913 2.4718 43 1 10.0076 -4.3284 4.3509 44 1 10.2831 -2.5626 4.0271 45 1 11.2950 -1.6343 5.9684 46 1 13.6916 -0.2277 7.8137 47 1 8.6249 -1.1487 5.6196 48 1 7.6540 -2.3229 6.6093 49 1 3.8527 -3.4367 1.5515 50 1 3.7989 -3.4559 3.3318 51 1 1.5442 -3.8325 2.3254 52 1 1.5995 -2.3421 3.2973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086247013.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:12 Heat of formation + Delta-G solvation = -102.329007 kcal Electronic energy + Delta-G solvation = -27576.827790 eV Core-core repulsion = 23768.110405 eV Total energy + Delta-G solvation = -3808.717385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.49176 -40.26498 -39.54367 -36.35059 -36.05821 -35.09003 -34.63912 -32.18025 -31.03700 -29.06532 -28.00840 -26.52886 -26.46004 -25.62002 -24.56114 -22.68156 -22.26270 -21.14831 -21.00777 -20.33825 -19.05375 -18.17676 -17.44743 -17.25986 -16.95016 -16.60047 -16.41209 -16.02313 -15.51631 -15.47777 -15.30580 -15.03073 -15.00290 -14.69214 -14.33698 -14.27007 -13.86733 -13.46512 -13.40460 -13.24243 -13.04805 -12.99086 -12.93564 -12.72044 -12.63021 -12.39522 -12.18429 -12.15741 -12.06343 -11.98769 -11.74771 -11.58564 -11.55727 -11.44339 -11.25244 -11.10817 -10.88655 -10.80806 -10.34998 -10.07874 -8.98210 -7.95226 -5.23608 1.47166 1.47838 1.57909 1.59673 2.16022 2.56279 2.82777 3.36753 3.54463 3.56798 3.72675 3.74615 3.77317 3.90272 3.92858 4.06537 4.10247 4.24977 4.28808 4.31419 4.36208 4.40368 4.43784 4.49667 4.55919 4.62880 4.71760 4.76229 4.78977 4.81280 4.84157 4.97124 4.98274 5.01100 5.03593 5.04799 5.06162 5.13502 5.21324 5.23293 5.28279 5.36306 5.42357 5.43904 5.48474 5.53154 5.73095 6.27206 6.34123 6.55410 7.24201 7.32549 8.11027 8.32517 9.28534 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.001848 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.300684 B =15145.494429 C =15373.188771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.148 4.148 4 C 0.101 3.899 5 H 0.070 0.930 6 C -0.127 4.127 7 C -0.104 4.104 8 H 0.120 0.880 9 C 0.512 3.488 10 O -0.589 6.589 11 N -0.711 5.711 12 C 0.138 3.862 13 C -0.093 4.093 14 H 0.124 0.876 15 C -0.138 4.138 16 C 0.143 3.857 17 H 0.082 0.918 18 N -0.730 5.730 19 C -0.241 4.241 20 H 0.081 0.919 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.974 3.026 24 H -0.262 1.262 25 H -0.295 1.295 26 H -0.296 1.296 27 C -0.152 4.152 28 C -0.141 4.141 29 C 0.060 3.940 30 O -0.394 6.394 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.416 0.584 41 H 0.043 0.957 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.371 0.629 46 H 0.250 0.750 47 H 0.053 0.947 48 H 0.070 0.930 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.112 0.888 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.093 -4.167 -12.219 31.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.205 4.205 4 C 0.043 3.957 5 H 0.088 0.912 6 C -0.165 4.165 7 C -0.125 4.125 8 H 0.138 0.862 9 C 0.299 3.701 10 O -0.469 6.469 11 N -0.363 5.363 12 C 0.013 3.987 13 C -0.112 4.112 14 H 0.142 0.858 15 C -0.178 4.178 16 C 0.033 3.967 17 H 0.100 0.900 18 N -0.368 5.368 19 C -0.373 4.373 20 H 0.099 0.901 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.803 3.197 24 H -0.187 1.187 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.193 4.193 28 C -0.179 4.179 29 C -0.016 4.016 30 O -0.313 6.313 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.253 0.747 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.203 0.797 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.123 0.877 51 H 0.130 0.870 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.739 -3.958 -12.792 31.706 hybrid contribution 1.322 0.520 1.012 1.744 sum -27.418 -3.438 -11.780 30.039 Atomic orbital electron populations 1.21723 0.93773 1.02003 1.02078 1.21105 0.97081 0.95958 0.96694 1.21875 1.01014 0.94730 1.02901 1.22164 0.91311 0.83210 0.98996 0.91177 1.22040 0.96349 1.00926 0.97224 1.21424 0.89556 0.99692 1.01867 0.86187 1.21144 0.91000 0.76915 0.81027 1.90691 1.71078 1.48022 1.37138 1.45919 1.07261 1.56188 1.26930 1.21199 0.79858 0.99369 0.98229 1.22457 0.96122 0.99359 0.93301 0.85835 1.23336 0.95408 1.01804 0.97237 1.21998 0.87219 0.93899 0.93563 0.89955 1.42649 1.35387 1.49986 1.08742 1.19787 1.09950 1.19276 0.88262 0.90140 1.25612 0.99507 1.00087 1.02102 1.69835 1.24733 1.31916 1.35888 0.85064 0.77585 0.77070 0.79997 1.18655 1.22250 1.22325 1.23744 0.99731 0.98450 0.97380 1.22210 0.97480 0.94001 1.04251 1.22740 0.92594 0.97410 0.88870 1.87914 1.74598 1.23762 1.45053 0.92267 0.92096 0.92651 0.91677 0.92965 0.91381 0.91695 0.90736 0.92615 0.74668 0.93835 0.92018 0.90331 0.91750 0.79729 0.94149 0.92822 0.91136 0.91973 0.87743 0.86997 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.05 71.98 0.65 -1.01 16 2 C -0.09 -1.26 2.72 -10.79 -0.03 -1.29 16 3 C -0.15 -1.86 8.84 71.98 0.64 -1.22 16 4 C 0.10 1.47 2.22 30.63 0.07 1.54 16 5 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 6 C -0.13 -2.30 3.59 30.68 0.11 -2.19 16 7 C -0.10 -1.61 2.61 -11.42 -0.03 -1.64 16 8 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 9 C 0.51 11.82 7.16 87.65 0.63 12.44 16 10 O -0.59 -19.49 15.97 -3.03 -0.05 -19.54 16 11 N -0.71 -13.79 5.46 -463.07 -2.53 -16.32 16 12 C 0.14 3.37 5.51 86.38 0.48 3.85 16 13 C -0.09 -2.18 3.75 -10.27 -0.04 -2.21 16 14 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 15 C -0.14 -4.16 7.39 31.12 0.23 -3.93 16 16 C 0.14 5.27 4.49 45.58 0.20 5.47 16 17 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 18 N -0.73 -36.55 5.40 -320.15 -1.73 -38.28 16 19 C -0.24 -13.23 9.97 84.03 0.84 -12.39 16 20 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 22 N -0.97 -60.20 13.06 21.65 0.28 -59.92 16 23 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 26 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 27 C -0.15 -4.67 7.44 31.18 0.23 -4.43 16 28 C -0.14 -1.58 5.30 30.68 0.16 -1.42 16 29 C 0.06 0.60 6.84 72.01 0.49 1.09 16 30 O -0.39 -6.21 9.73 -148.98 -1.45 -7.66 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.75 7.68 -2.39 -0.02 0.73 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 0.77 6.49 -2.39 -0.02 0.76 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 1.46 6.58 -2.39 -0.02 1.44 16 39 H 0.06 1.27 8.03 -2.38 -0.02 1.25 16 40 H 0.42 5.21 7.97 -92.71 -0.74 4.48 16 41 H 0.04 1.32 7.85 -2.39 -0.02 1.30 16 42 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 45 H 0.37 20.31 7.92 -92.71 -0.73 19.58 16 46 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 47 H 0.05 1.93 7.90 -2.39 -0.02 1.91 16 48 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 50 H 0.10 0.65 7.68 -2.39 -0.02 0.63 16 51 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 Total: -1.00 -72.55 407.29 1.07 -71.48 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -0.58 Total: 33.78 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.10 Total: -11.55 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -3.98 Total: -114.51 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -1.50 Total: -27.20 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -72.55 1.07 -71.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086247013.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.847 kcal (2) G-P(sol) polarization free energy of solvation -72.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds