Wall clock time and date at job start Tue Mar 31 2020 13:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47170 * 2 1 4 4 C 1.52992 * 109.47087 * 239.99259 * 2 1 3 5 5 C 1.50704 * 109.47204 * 60.00400 * 4 2 1 6 6 O 1.21283 * 119.99791 * 6.78659 * 5 4 2 7 7 N 1.34776 * 120.00272 * 186.79545 * 5 4 2 8 8 C 1.46056 * 120.19018 * 174.85795 * 7 5 4 9 9 C 1.53423 * 110.13897 * 293.02862 * 8 7 5 10 10 C 1.53432 * 108.49626 * 316.33522 * 9 8 7 11 11 C 1.53119 * 109.35562 * 287.64525 * 10 9 8 12 12 C 1.52474 * 109.66857 * 77.03113 * 11 10 9 13 13 C 1.53494 * 109.15284 * 43.93030 * 12 11 10 14 14 H 1.09002 * 109.63428 * 5.47961 * 13 12 11 15 15 N 1.46500 * 109.63580 * 125.88913 * 13 12 11 16 16 C 1.36937 * 119.99554 * 205.00163 * 15 13 12 17 17 H 1.08001 * 120.00628 * 359.97438 * 16 15 13 18 18 C 1.38818 * 119.99921 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99653 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00083 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47460 * 90.00146 * 20 18 16 22 22 H 1.48503 * 109.47058 * 210.00173 * 20 18 16 23 23 H 1.48504 * 109.47230 * 329.99591 * 20 18 16 24 24 C 1.47134 * 120.18666 * 354.83876 * 7 5 4 25 25 C 1.52999 * 109.46822 * 119.99344 * 2 1 3 26 26 C 1.53001 * 117.50278 * 13.75074 * 25 2 1 27 27 C 1.52997 * 117.50496 * 305.08721 * 25 2 1 28 28 H 1.08996 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47203 * 300.00462 * 1 2 3 30 30 H 1.08999 * 109.47281 * 60.00597 * 1 2 3 31 31 H 0.96702 * 114.00223 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47625 * 300.00130 * 4 2 1 33 33 H 1.09005 * 109.47435 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.36059 * 53.22969 * 8 7 5 35 35 H 1.08992 * 109.36020 * 172.96088 * 8 7 5 36 36 H 1.08997 * 109.62865 * 196.63180 * 9 8 7 37 37 H 1.08999 * 109.62920 * 76.03529 * 9 8 7 38 38 H 1.08996 * 109.48812 * 167.68378 * 10 9 8 39 39 H 1.09001 * 109.49256 * 47.61264 * 10 9 8 40 40 H 1.08996 * 109.43747 * 197.09249 * 11 10 9 41 41 H 1.09001 * 109.43391 * 317.01589 * 11 10 9 42 42 H 1.08995 * 109.52333 * 163.83101 * 12 11 10 43 43 H 1.08997 * 109.52780 * 284.02730 * 12 11 10 44 44 H 0.96994 * 120.00078 * 24.99264 * 15 13 12 45 45 H 0.97005 * 119.99983 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.85194 * 348.37363 * 24 7 5 47 47 H 1.09003 * 109.84485 * 227.38124 * 24 7 5 48 48 H 1.09011 * 115.54577 * 159.41698 * 25 2 1 49 49 H 1.08997 * 117.49740 * 359.97438 * 26 25 2 50 50 H 1.08998 * 117.50497 * 145.01951 * 26 25 2 51 51 H 1.09003 * 117.50320 * 214.98570 * 27 25 2 52 52 H 1.09007 * 117.49755 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5377 -0.0111 -2.4797 6 8 0.9453 1.0418 -2.3728 7 7 1.7466 -0.5459 -3.6990 8 6 1.1660 0.0792 -4.8845 9 6 -0.3632 -0.0404 -4.8494 10 6 -0.7302 -1.4636 -4.4090 11 6 -0.4247 -2.4416 -5.5468 12 6 1.0760 -2.7036 -5.6094 13 6 1.6095 -2.9186 -4.1863 14 1 0.7782 -2.9299 -3.4813 15 7 2.3304 -4.1921 -4.1179 16 6 2.4498 -4.8479 -2.9218 17 1 2.0128 -4.4261 -2.0286 18 6 3.1324 -6.0548 -2.8570 19 7 3.6645 -6.5691 -3.9455 20 14 3.2946 -6.9498 -1.2254 21 1 2.1461 -7.8749 -1.0519 22 1 4.5612 -7.7249 -1.2098 23 1 3.3058 -5.9611 -0.1174 24 6 2.5613 -1.7625 -3.8435 25 6 2.0399 -0.7211 1.2493 26 6 1.0326 -1.5531 2.0455 27 6 1.5399 -0.2224 2.6066 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 2.9703 1.4236 -0.0004 32 1 1.6766 -1.7491 -1.2490 33 1 3.1300 -0.7210 -1.2494 34 1 1.4455 1.1323 -4.9113 35 1 1.5448 -0.4181 -5.7774 36 1 -0.7683 0.1515 -5.8429 37 1 -0.7705 0.6792 -4.1392 38 1 -1.7921 -1.5070 -4.1674 39 1 -0.1455 -1.7344 -3.5298 40 1 -0.9497 -3.3801 -5.3692 41 1 -0.7573 -2.0132 -6.4923 42 1 1.2656 -3.5945 -6.2079 43 1 1.5769 -1.8471 -6.0606 44 1 2.7231 -4.5707 -4.9200 45 1 4.1412 -7.4127 -3.9004 46 1 3.0791 -1.9745 -2.9081 47 1 3.2861 -1.6293 -4.6467 48 1 3.0647 -1.0887 1.1946 49 1 0.0064 -1.5864 1.6795 50 1 1.3945 -2.4678 2.5149 51 1 2.2356 -0.2621 3.4449 52 1 0.8480 0.6199 2.6095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088298488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:39 Heat of formation + Delta-G solvation = -35.404015 kcal Electronic energy + Delta-G solvation = -30580.563367 eV Core-core repulsion = 26774.748067 eV Total energy + Delta-G solvation = -3805.815300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.53934 -39.05200 -37.38748 -35.34491 -34.61550 -33.95043 -32.20070 -31.47148 -29.67217 -28.27978 -26.65753 -26.53476 -24.24283 -23.68558 -22.40480 -22.12142 -21.22033 -19.75393 -19.47842 -18.37298 -17.27779 -16.94260 -16.39060 -16.09674 -15.59466 -15.23887 -15.12212 -14.93355 -14.42836 -14.07271 -13.92135 -13.62497 -13.34216 -13.00036 -12.95360 -12.81060 -12.44050 -12.34551 -12.09112 -11.70845 -11.69787 -11.60083 -11.50310 -11.13986 -11.13183 -11.05580 -10.94237 -10.82685 -10.70759 -10.50496 -10.42168 -10.25019 -10.17016 -9.92716 -9.84223 -9.71667 -9.56164 -9.18296 -9.09787 -8.28423 -7.03316 -5.87043 -3.16496 2.97244 3.29898 3.36027 3.41486 3.43178 3.70040 4.42125 4.50914 4.54104 4.72690 4.88729 4.94109 5.02389 5.11041 5.13740 5.20322 5.27833 5.30078 5.35738 5.43337 5.52073 5.58379 5.59970 5.69805 5.75203 5.78559 5.81533 5.86414 5.90345 5.95065 5.97672 6.03765 6.07773 6.08728 6.12496 6.20458 6.22755 6.24822 6.34911 6.43898 6.49464 6.55686 6.64734 6.71193 6.86048 7.03906 7.59156 7.75937 7.82700 8.31420 8.56987 9.42811 9.99632 10.33746 11.35139 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.008550 B = 0.005964 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.207311 B = 4693.470536 C = 7201.600941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.184 3.816 3 O -0.538 6.538 4 C -0.168 4.168 5 C 0.517 3.483 6 O -0.528 6.528 7 N -0.606 5.606 8 C 0.112 3.888 9 C -0.132 4.132 10 C -0.131 4.131 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.158 3.842 14 H 0.064 0.936 15 N -0.719 5.719 16 C -0.244 4.244 17 H 0.070 0.930 18 C -0.009 4.009 19 N -0.929 5.929 20 Si 0.903 3.097 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.082 3.918 25 C -0.188 4.188 26 C -0.176 4.176 27 C -0.167 4.167 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.366 0.634 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.105 0.895 49 H 0.102 0.898 50 H 0.094 0.906 51 H 0.090 0.910 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.632 12.595 3.402 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.142 3.858 3 O -0.342 6.342 4 C -0.208 4.208 5 C 0.305 3.695 6 O -0.405 6.405 7 N -0.340 5.340 8 C -0.010 4.010 9 C -0.171 4.171 10 C -0.168 4.168 11 C -0.150 4.150 12 C -0.174 4.174 13 C 0.047 3.953 14 H 0.081 0.919 15 N -0.360 5.360 16 C -0.375 4.375 17 H 0.088 0.912 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.733 3.267 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.043 4.043 25 C -0.207 4.207 26 C -0.213 4.213 27 C -0.204 4.204 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.212 0.788 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.084 0.916 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.112 0.888 51 H 0.109 0.891 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.585 13.194 3.620 14.778 hybrid contribution 1.155 -1.170 0.545 1.732 sum -4.430 12.024 4.164 13.474 Atomic orbital electron populations 1.22013 0.92680 1.01918 1.04035 1.20243 0.94809 0.81377 0.89323 1.86677 1.25497 1.25230 1.96779 1.22457 1.02721 1.02035 0.93578 1.20369 0.79766 0.85093 0.84290 1.90652 1.41665 1.22020 1.86152 1.48141 1.51531 1.28206 1.06120 1.21553 0.93666 0.97625 0.88183 1.22065 0.95916 0.97694 1.01384 1.21968 1.00593 0.94321 0.99913 1.21469 0.96632 0.99009 0.97880 1.22250 0.95524 1.01342 0.98273 1.21120 0.93347 0.85982 0.94824 0.91873 1.42546 1.64646 1.19580 1.09224 1.19195 1.28958 1.01758 0.87563 0.91238 1.24728 1.00749 0.98052 0.96979 1.69652 1.40931 1.20565 1.26569 0.86267 0.77195 0.79859 0.83330 1.21678 1.21773 1.20661 1.23148 0.94457 0.83847 1.02878 1.23057 0.99755 1.04625 0.93231 1.23126 0.99633 0.95019 1.03523 1.22856 1.03752 0.97976 0.95774 0.91550 0.92430 0.89599 0.78818 0.87703 0.88933 0.92168 0.89541 0.91638 0.91337 0.93039 0.90008 0.92228 0.92738 0.91463 0.91920 0.78125 0.93414 0.89623 0.91556 0.87675 0.87947 0.88759 0.89114 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 7.18 37.16 0.27 -1.75 16 2 C 0.18 2.39 0.80 -90.62 -0.07 2.32 16 3 O -0.54 -7.41 11.69 -54.89 -0.64 -8.06 16 4 C -0.17 -2.30 3.31 -27.89 -0.09 -2.39 16 5 C 0.52 7.89 6.31 -10.98 -0.07 7.82 16 6 O -0.53 -9.23 12.19 -14.10 -0.17 -9.41 16 7 N -0.61 -8.74 1.72 -172.89 -0.30 -9.04 16 8 C 0.11 1.48 5.12 -4.06 -0.02 1.46 16 9 C -0.13 -1.69 5.56 -26.29 -0.15 -1.84 16 10 C -0.13 -1.79 5.44 -26.45 -0.14 -1.94 16 11 C -0.11 -1.54 5.67 -26.94 -0.15 -1.69 16 12 C -0.14 -2.06 5.24 -26.74 -0.14 -2.20 16 13 C 0.16 2.79 2.40 -67.35 -0.16 2.62 16 14 H 0.06 1.19 5.39 -51.93 -0.28 0.91 16 15 N -0.72 -16.24 5.09 -52.86 -0.27 -16.51 16 16 C -0.24 -6.17 9.94 -15.06 -0.15 -6.32 16 17 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 20 Si 0.90 21.22 29.55 -169.99 -5.02 16.19 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.08 1.29 5.36 -3.37 -0.02 1.27 16 25 C -0.19 -2.20 5.32 -90.62 -0.48 -2.69 16 26 C -0.18 -1.98 9.66 -26.69 -0.26 -2.23 16 27 C -0.17 -1.77 9.85 -26.70 -0.26 -2.04 16 28 H 0.07 0.83 6.74 -51.93 -0.35 0.48 16 29 H 0.06 0.73 6.96 -51.93 -0.36 0.37 16 30 H 0.09 1.35 5.76 -51.93 -0.30 1.05 16 31 H 0.37 3.85 9.05 45.56 0.41 4.27 16 32 H 0.10 1.54 7.89 -51.93 -0.41 1.13 16 33 H 0.09 1.17 7.72 -51.93 -0.40 0.76 16 34 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 35 H 0.09 1.05 5.06 -51.93 -0.26 0.78 16 36 H 0.07 0.73 7.89 -51.93 -0.41 0.32 16 37 H 0.07 0.98 7.39 -51.93 -0.38 0.59 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.27 3.69 -51.93 -0.19 1.08 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.66 7.85 -51.93 -0.41 0.25 16 42 H 0.07 1.12 7.60 -51.93 -0.39 0.72 16 43 H 0.06 0.85 4.49 -51.93 -0.23 0.62 16 44 H 0.38 9.39 7.52 -40.82 -0.31 9.09 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.09 1.42 6.10 -51.93 -0.32 1.11 16 47 H 0.07 1.02 7.97 -51.93 -0.41 0.61 16 48 H 0.11 1.19 8.14 -51.92 -0.42 0.77 16 49 H 0.10 1.13 5.89 -51.93 -0.31 0.82 16 50 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 52 H 0.10 1.06 7.29 -51.93 -0.38 0.68 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -29.48 380.43 -9.72 -39.20 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -7.77 Total: 17.64 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.00 Total: -9.92 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.16 Total: -51.39 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.81 Total: -17.46 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.48 -9.72 -39.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088298488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.795 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds