Wall clock time and date at job start Tue Mar 31 2020 13:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47170 * 2 1 4 4 C 1.52992 * 109.47087 * 239.99259 * 2 1 3 5 5 C 1.50704 * 109.47204 * 60.00400 * 4 2 1 6 6 O 1.21283 * 119.99791 * 6.78659 * 5 4 2 7 7 N 1.34776 * 120.00272 * 186.79545 * 5 4 2 8 8 C 1.46056 * 120.19018 * 174.85795 * 7 5 4 9 9 C 1.53423 * 110.13897 * 293.02862 * 8 7 5 10 10 C 1.53432 * 108.49626 * 316.33522 * 9 8 7 11 11 C 1.53119 * 109.35562 * 287.64525 * 10 9 8 12 12 C 1.52474 * 109.66857 * 77.03113 * 11 10 9 13 13 C 1.53494 * 109.15284 * 43.93030 * 12 11 10 14 14 H 1.09002 * 109.63428 * 5.47961 * 13 12 11 15 15 N 1.46500 * 109.63580 * 125.88913 * 13 12 11 16 16 C 1.36937 * 119.99554 * 205.00163 * 15 13 12 17 17 H 1.08001 * 120.00628 * 359.97438 * 16 15 13 18 18 C 1.38818 * 119.99921 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99653 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00083 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47460 * 90.00146 * 20 18 16 22 22 H 1.48503 * 109.47058 * 210.00173 * 20 18 16 23 23 H 1.48504 * 109.47230 * 329.99591 * 20 18 16 24 24 C 1.47134 * 120.18666 * 354.83876 * 7 5 4 25 25 C 1.52999 * 109.46822 * 119.99344 * 2 1 3 26 26 C 1.53001 * 117.50278 * 13.75074 * 25 2 1 27 27 C 1.52997 * 117.50496 * 305.08721 * 25 2 1 28 28 H 1.08996 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47203 * 300.00462 * 1 2 3 30 30 H 1.08999 * 109.47281 * 60.00597 * 1 2 3 31 31 H 0.96702 * 114.00223 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47625 * 300.00130 * 4 2 1 33 33 H 1.09005 * 109.47435 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.36059 * 53.22969 * 8 7 5 35 35 H 1.08992 * 109.36020 * 172.96088 * 8 7 5 36 36 H 1.08997 * 109.62865 * 196.63180 * 9 8 7 37 37 H 1.08999 * 109.62920 * 76.03529 * 9 8 7 38 38 H 1.08996 * 109.48812 * 167.68378 * 10 9 8 39 39 H 1.09001 * 109.49256 * 47.61264 * 10 9 8 40 40 H 1.08996 * 109.43747 * 197.09249 * 11 10 9 41 41 H 1.09001 * 109.43391 * 317.01589 * 11 10 9 42 42 H 1.08995 * 109.52333 * 163.83101 * 12 11 10 43 43 H 1.08997 * 109.52780 * 284.02730 * 12 11 10 44 44 H 0.96994 * 120.00078 * 24.99264 * 15 13 12 45 45 H 0.97005 * 119.99983 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.85194 * 348.37363 * 24 7 5 47 47 H 1.09003 * 109.84485 * 227.38124 * 24 7 5 48 48 H 1.09011 * 115.54577 * 159.41698 * 25 2 1 49 49 H 1.08997 * 117.49740 * 359.97438 * 26 25 2 50 50 H 1.08998 * 117.50497 * 145.01951 * 26 25 2 51 51 H 1.09003 * 117.50320 * 214.98570 * 27 25 2 52 52 H 1.09007 * 117.49755 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.5377 -0.0111 -2.4797 6 8 0.9453 1.0418 -2.3728 7 7 1.7466 -0.5459 -3.6990 8 6 1.1660 0.0792 -4.8845 9 6 -0.3632 -0.0404 -4.8494 10 6 -0.7302 -1.4636 -4.4090 11 6 -0.4247 -2.4416 -5.5468 12 6 1.0760 -2.7036 -5.6094 13 6 1.6095 -2.9186 -4.1863 14 1 0.7782 -2.9299 -3.4813 15 7 2.3304 -4.1921 -4.1179 16 6 2.4498 -4.8479 -2.9218 17 1 2.0128 -4.4261 -2.0286 18 6 3.1324 -6.0548 -2.8570 19 7 3.6645 -6.5691 -3.9455 20 14 3.2946 -6.9498 -1.2254 21 1 2.1461 -7.8749 -1.0519 22 1 4.5612 -7.7249 -1.2098 23 1 3.3058 -5.9611 -0.1174 24 6 2.5613 -1.7625 -3.8435 25 6 2.0399 -0.7211 1.2493 26 6 1.0326 -1.5531 2.0455 27 6 1.5399 -0.2224 2.6066 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 2.9703 1.4236 -0.0004 32 1 1.6766 -1.7491 -1.2490 33 1 3.1300 -0.7210 -1.2494 34 1 1.4455 1.1323 -4.9113 35 1 1.5448 -0.4181 -5.7774 36 1 -0.7683 0.1515 -5.8429 37 1 -0.7705 0.6792 -4.1392 38 1 -1.7921 -1.5070 -4.1674 39 1 -0.1455 -1.7344 -3.5298 40 1 -0.9497 -3.3801 -5.3692 41 1 -0.7573 -2.0132 -6.4923 42 1 1.2656 -3.5945 -6.2079 43 1 1.5769 -1.8471 -6.0606 44 1 2.7231 -4.5707 -4.9200 45 1 4.1412 -7.4127 -3.9004 46 1 3.0791 -1.9745 -2.9081 47 1 3.2861 -1.6293 -4.6467 48 1 3.0647 -1.0887 1.1946 49 1 0.0064 -1.5864 1.6795 50 1 1.3945 -2.4678 2.5149 51 1 2.2356 -0.2621 3.4449 52 1 0.8480 0.6199 2.6095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088298488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:38 Heat of formation + Delta-G solvation = -51.897027 kcal Electronic energy + Delta-G solvation = -30581.278557 eV Core-core repulsion = 26774.748067 eV Total energy + Delta-G solvation = -3806.530491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.72920 -40.11775 -38.62309 -36.41348 -36.13301 -35.16933 -33.82350 -32.62425 -31.20980 -29.47742 -27.97467 -27.70815 -25.81443 -24.91385 -23.49576 -23.22376 -22.42996 -20.98859 -20.53650 -19.59009 -19.08281 -18.07270 -17.54277 -17.28061 -16.86395 -16.51560 -16.27758 -16.11809 -15.87256 -15.35799 -15.23289 -15.02412 -14.80156 -14.19777 -14.12420 -13.92998 -13.70954 -13.48872 -13.34446 -13.05333 -12.86759 -12.82577 -12.77126 -12.61381 -12.60069 -12.27837 -12.19743 -12.10343 -12.07555 -11.78441 -11.70758 -11.55076 -11.42389 -11.14318 -11.06444 -10.98556 -10.82241 -10.80354 -10.34215 -9.64481 -8.85429 -7.90040 -5.17400 1.49641 1.50941 1.58064 1.75597 2.12289 2.59801 2.79509 3.39366 3.45326 3.56719 3.66456 3.82879 3.92732 3.96465 4.05709 4.07332 4.12764 4.16678 4.17446 4.22334 4.31146 4.37856 4.47295 4.52602 4.61867 4.66418 4.72168 4.75806 4.80233 4.82957 4.91029 4.92851 4.98860 5.02955 5.04306 5.12698 5.14883 5.23526 5.25994 5.27319 5.35000 5.39349 5.43171 5.46929 5.57630 5.63335 5.80114 6.31795 6.53149 6.92943 7.35713 7.39423 8.15063 8.37625 9.33150 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.008550 B = 0.005964 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3274.207311 B = 4693.470536 C = 7201.600941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.188 3.812 3 O -0.554 6.554 4 C -0.164 4.164 5 C 0.516 3.484 6 O -0.549 6.549 7 N -0.601 5.601 8 C 0.108 3.892 9 C -0.124 4.124 10 C -0.127 4.127 11 C -0.106 4.106 12 C -0.130 4.130 13 C 0.158 3.842 14 H 0.054 0.946 15 N -0.729 5.729 16 C -0.230 4.230 17 H 0.076 0.924 18 C -0.070 4.070 19 N -0.967 5.967 20 Si 0.958 3.042 21 H -0.294 1.294 22 H -0.300 1.300 23 H -0.265 1.265 24 C 0.095 3.905 25 C -0.195 4.195 26 C -0.181 4.181 27 C -0.156 4.156 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.379 0.621 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.084 0.916 44 H 0.374 0.626 45 H 0.249 0.751 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.111 0.889 49 H 0.101 0.899 50 H 0.099 0.901 51 H 0.105 0.895 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 13.719 3.781 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.147 3.853 3 O -0.360 6.360 4 C -0.204 4.204 5 C 0.305 3.695 6 O -0.428 6.428 7 N -0.334 5.334 8 C -0.014 4.014 9 C -0.162 4.162 10 C -0.165 4.165 11 C -0.143 4.143 12 C -0.168 4.168 13 C 0.049 3.951 14 H 0.071 0.929 15 N -0.369 5.369 16 C -0.362 4.362 17 H 0.094 0.906 18 C -0.262 4.262 19 N -0.618 5.618 20 Si 0.788 3.212 21 H -0.221 1.221 22 H -0.227 1.227 23 H -0.189 1.189 24 C -0.030 4.030 25 C -0.214 4.214 26 C -0.218 4.218 27 C -0.193 4.193 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.227 0.773 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.206 0.794 45 H 0.058 0.942 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.129 0.871 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.123 0.877 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.889 14.371 4.012 16.041 hybrid contribution 1.165 -1.419 0.398 1.879 sum -4.723 12.952 4.410 14.475 Atomic orbital electron populations 1.21961 0.93323 1.01945 1.03054 1.20172 0.94330 0.81235 0.89595 1.86642 1.26879 1.25635 1.96811 1.22449 1.03369 1.01226 0.93385 1.20605 0.79283 0.84833 0.84796 1.90650 1.42611 1.23069 1.86440 1.48081 1.51261 1.27536 1.06552 1.21707 0.93940 0.97731 0.88027 1.22003 0.95542 0.96411 1.02249 1.21897 1.00586 0.94902 0.99072 1.21423 0.95259 0.98589 0.99074 1.22192 0.96760 1.01552 0.96293 1.21273 0.92873 0.84572 0.96388 0.92867 1.42711 1.65004 1.21231 1.07970 1.19542 1.26771 1.01252 0.88616 0.90562 1.25394 1.01864 0.99370 0.99577 1.69792 1.42797 1.20856 1.28356 0.85366 0.76259 0.78821 0.80755 1.22131 1.22749 1.18941 1.22807 0.93897 0.83575 1.02718 1.23011 1.00093 1.05174 0.93094 1.23189 0.99487 0.95558 1.03537 1.22888 1.03535 0.97389 0.95480 0.91036 0.91937 0.91920 0.77329 0.88710 0.87789 0.92149 0.88046 0.89172 0.92970 0.92541 0.92075 0.93511 0.90217 0.92895 0.89831 0.79383 0.94246 0.90473 0.90708 0.87139 0.88060 0.88275 0.87655 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 7.18 71.98 0.52 -3.35 16 2 C 0.19 4.70 0.80 -10.80 -0.01 4.69 16 3 O -0.55 -14.67 11.69 -130.19 -1.52 -16.20 16 4 C -0.16 -4.35 3.31 29.85 0.10 -4.26 16 5 C 0.52 15.30 6.31 87.66 0.55 15.86 16 6 O -0.55 -18.87 12.19 15.76 0.19 -18.68 16 7 N -0.60 -16.49 1.72 -819.30 -1.41 -17.90 16 8 C 0.11 2.60 5.12 86.60 0.44 3.04 16 9 C -0.12 -2.89 5.56 30.88 0.17 -2.72 16 10 C -0.13 -3.28 5.44 30.78 0.17 -3.11 16 11 C -0.11 -2.68 5.67 30.46 0.17 -2.51 16 12 C -0.13 -3.74 5.24 30.59 0.16 -3.58 16 13 C 0.16 5.43 2.40 45.37 0.11 5.54 16 14 H 0.05 1.98 5.39 -2.39 -0.01 1.96 16 15 N -0.73 -32.83 5.09 -321.16 -1.64 -34.47 16 16 C -0.23 -11.57 9.94 84.03 0.84 -10.73 16 17 H 0.08 3.67 7.83 -2.91 -0.02 3.65 16 18 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 19 N -0.97 -56.12 13.06 21.65 0.28 -55.84 16 20 Si 0.96 43.64 29.55 68.60 2.03 45.67 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 C 0.10 2.87 5.36 86.47 0.46 3.34 16 25 C -0.20 -4.26 5.32 -10.79 -0.06 -4.32 16 26 C -0.18 -3.77 9.66 30.62 0.30 -3.47 16 27 C -0.16 -3.02 9.85 30.62 0.30 -2.72 16 28 H 0.07 1.77 6.74 -2.39 -0.02 1.75 16 29 H 0.06 1.55 6.96 -2.39 -0.02 1.54 16 30 H 0.06 1.97 5.76 -2.39 -0.01 1.95 16 31 H 0.38 7.48 9.05 -74.06 -0.67 6.81 16 32 H 0.09 2.72 7.89 -2.39 -0.02 2.70 16 33 H 0.10 2.49 7.72 -2.38 -0.02 2.47 16 34 H 0.06 1.49 8.06 -2.39 -0.02 1.47 16 35 H 0.10 2.13 5.06 -2.39 -0.01 2.12 16 36 H 0.09 1.69 7.89 -2.39 -0.02 1.67 16 37 H 0.05 1.42 7.39 -2.39 -0.02 1.40 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.85 3.69 -2.39 -0.01 1.84 16 40 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.66 7.85 -2.39 -0.02 1.64 16 42 H 0.05 1.70 7.60 -2.39 -0.02 1.68 16 43 H 0.08 2.04 4.49 -2.39 -0.01 2.03 16 44 H 0.37 18.40 7.52 -92.71 -0.70 17.70 16 45 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 46 H 0.08 2.48 6.10 -2.39 -0.01 2.47 16 47 H 0.07 2.16 7.97 -2.39 -0.02 2.14 16 48 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 49 H 0.10 2.11 5.89 -2.39 -0.01 2.10 16 50 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 51 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.09 1.88 7.29 -2.38 -0.02 1.87 16 Total: -1.00 -62.74 380.43 2.20 -60.54 By element: Atomic # 1 Polarization: 48.87 SS G_CDS: -0.42 Total: 48.45 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 4.69 Total: -11.58 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -2.76 Total: -108.21 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -1.33 Total: -34.87 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -62.74 2.20 -60.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088298488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.642 kcal (2) G-P(sol) polarization free energy of solvation -62.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds