Wall clock time and date at job start Tue Mar 31 2020 13:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47494 * 2 1 4 4 C 1.50700 * 109.47087 * 180.02562 * 3 2 1 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99859 * 179.97438 * 4 3 2 7 7 C 1.47852 * 134.35849 * 0.05864 * 6 4 3 8 8 C 1.52538 * 85.64910 * 203.56136 * 7 6 4 9 9 C 1.53533 * 116.18837 * 95.37258 * 8 7 6 10 10 C 1.54520 * 104.03948 * 93.20684 * 9 8 7 11 11 H 1.08998 * 110.01231 * 141.50173 * 10 9 8 12 12 O 1.42900 * 110.04553 * 262.85557 * 10 9 8 13 13 C 1.53957 * 106.70160 * 22.18815 * 10 9 8 14 14 H 1.08997 * 110.01708 * 240.64857 * 13 10 9 15 15 N 1.46501 * 110.01274 * 119.31474 * 13 10 9 16 16 C 1.36942 * 119.99926 * 86.45395 * 15 13 10 17 17 H 1.07998 * 119.99699 * 0.02562 * 16 15 13 18 18 C 1.38808 * 119.99806 * 180.02562 * 16 15 13 19 19 N 1.31620 * 120.00168 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99705 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47228 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47513 * 59.99687 * 20 18 16 23 23 H 1.48506 * 109.47300 * 300.00000 * 20 18 16 24 24 C 1.53529 * 116.18572 * 218.92152 * 8 7 6 25 25 C 1.47863 * 134.35972 * 179.97438 * 6 4 3 26 26 H 1.09003 * 113.83525 * 42.26217 * 25 6 4 27 27 C 1.52995 * 113.84581 * 270.62237 * 25 6 4 28 28 C 1.53001 * 109.47329 * 329.62984 * 27 25 6 29 29 C 1.52995 * 109.47404 * 89.63357 * 27 25 6 30 30 H 1.09007 * 109.46521 * 300.00018 * 1 2 3 31 31 H 1.08997 * 109.46941 * 59.99895 * 1 2 3 32 32 H 1.08997 * 109.47114 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46730 * 239.99472 * 2 1 3 34 34 H 1.09006 * 109.46958 * 120.00263 * 2 1 3 35 35 H 1.08997 * 109.47444 * 59.99938 * 3 2 1 36 36 H 1.09009 * 109.46881 * 299.99711 * 3 2 1 37 37 H 1.08995 * 113.84899 * 89.38239 * 7 6 4 38 38 H 1.09001 * 113.84475 * 317.73454 * 7 6 4 39 39 H 1.09001 * 110.51471 * 334.56356 * 9 8 7 40 40 H 1.09006 * 110.62736 * 211.90074 * 9 8 7 41 41 H 0.96704 * 113.99778 * 178.74149 * 12 10 9 42 42 H 0.97003 * 119.99979 * 266.45293 * 15 13 10 43 43 H 0.96999 * 119.99751 * 0.02562 * 19 18 16 44 44 H 1.09002 * 110.51763 * 148.15924 * 24 8 7 45 45 H 1.09002 * 110.51638 * 25.43472 * 24 8 7 46 46 H 1.09006 * 109.46934 * 209.63410 * 27 25 6 47 47 H 1.09005 * 109.46889 * 51.86012 * 28 27 25 48 48 H 1.09001 * 109.47387 * 171.85485 * 28 27 25 49 49 H 1.08997 * 109.46906 * 291.86260 * 28 27 25 50 50 H 1.09002 * 109.46861 * 57.79064 * 29 27 25 51 51 H 1.08999 * 109.47602 * 177.79172 * 29 27 25 52 52 H 1.09006 * 109.47201 * 297.79350 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 -0.0006 5 8 4.1535 0.3920 -0.0006 6 7 4.2210 2.6095 -0.0013 7 6 3.8225 4.0333 -0.0004 8 6 5.1954 4.2978 -0.6102 9 6 5.2496 4.3941 -2.1415 10 6 5.0988 5.9050 -2.4277 11 1 5.7444 6.1938 -3.2571 12 8 3.7380 6.2113 -2.7381 13 6 5.5258 6.6429 -1.1458 14 1 4.6948 7.2342 -0.7612 15 7 6.6717 7.5119 -1.4255 16 6 6.4690 8.7835 -1.8913 17 1 5.4645 9.1460 -2.0521 18 6 7.5548 9.6066 -2.1569 19 7 8.7790 9.1650 -1.9604 20 14 7.2783 11.3410 -2.7930 21 1 8.5892 12.0086 -2.9962 22 1 6.4789 12.1092 -1.8051 23 1 6.5471 11.2841 -4.0843 24 6 5.9231 5.5577 -0.1200 25 6 5.6535 2.9762 -0.0015 26 1 6.2632 2.3702 -0.6718 27 6 6.2565 3.1155 1.3977 28 6 5.1753 3.5812 2.3750 29 6 6.8070 1.7626 1.8529 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5140 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8899 36 1 1.6768 1.9563 -0.8901 37 1 3.6946 4.4546 0.9966 38 1 2.9923 4.2589 -0.6698 39 1 4.4267 3.8365 -2.5887 40 1 6.2057 4.0279 -2.5157 41 1 3.5750 7.1491 -2.9089 42 1 7.5739 7.1864 -1.2807 43 1 8.9225 8.2642 -1.6304 44 1 7.0020 5.4027 -0.1265 45 1 5.5816 5.8321 0.8781 46 1 7.0643 3.8471 1.3739 47 1 4.3059 2.9288 2.2928 48 1 5.5640 3.5419 3.3926 49 1 4.8857 4.6044 2.1358 50 1 7.5493 1.4124 1.1356 51 1 7.2715 1.8704 2.8330 52 1 5.9924 1.0409 1.9143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093429002.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:40 Heat of formation + Delta-G solvation = -56.570380 kcal Electronic energy + Delta-G solvation = -29661.958476 eV Core-core repulsion = 25855.225334 eV Total energy + Delta-G solvation = -3806.733142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.53869 -38.83900 -37.34679 -34.72054 -34.51977 -34.20502 -33.15717 -30.62189 -28.97447 -28.26322 -27.27007 -26.86803 -26.01316 -24.15010 -23.11214 -21.95753 -20.72807 -19.72311 -19.31267 -18.07827 -17.45449 -16.97581 -16.89229 -16.39892 -15.84947 -15.55705 -15.30607 -14.49942 -14.33777 -13.89281 -13.85081 -13.67108 -13.60858 -13.38548 -13.21139 -12.97225 -12.86379 -12.29057 -12.22851 -12.13561 -12.03079 -11.78068 -11.72852 -11.47598 -11.39096 -11.17555 -11.01165 -10.95520 -10.85571 -10.81667 -10.72043 -10.57061 -10.44586 -10.10261 -10.03829 -9.71708 -9.52790 -9.24606 -8.91332 -8.60256 -7.13559 -6.20290 -3.21897 2.61893 2.78273 3.45576 3.48129 3.65954 4.18184 4.37642 4.47700 4.59718 4.68094 4.69806 4.79162 4.79546 4.82939 4.95665 5.08922 5.16408 5.22988 5.27688 5.38974 5.42889 5.43689 5.46305 5.50863 5.57869 5.61013 5.63657 5.69714 5.72429 5.77073 5.82413 5.84733 5.88254 5.91272 5.93518 5.96644 5.98355 6.09461 6.14342 6.18336 6.22526 6.26150 6.31278 6.38795 6.53429 6.76819 7.66707 7.73404 8.11497 8.16887 8.65272 9.11098 9.97291 10.11594 11.27665 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.003160 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.842810 B = 8859.393066 C = 9805.792383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.532 3.468 5 O -0.547 6.547 6 N -0.632 5.632 7 C 0.108 3.892 8 C -0.086 4.086 9 C -0.088 4.088 10 C 0.077 3.923 11 H 0.064 0.936 12 O -0.577 6.577 13 C 0.154 3.846 14 H 0.059 0.941 15 N -0.731 5.731 16 C -0.338 4.338 17 H 0.064 0.936 18 C -0.041 4.041 19 N -0.940 5.940 20 Si 1.078 2.922 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.295 1.295 24 C -0.112 4.112 25 C 0.152 3.848 26 H 0.088 0.912 27 C -0.096 4.096 28 C -0.150 4.150 29 C -0.144 4.144 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.377 0.623 42 H 0.368 0.632 43 H 0.256 0.744 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.065 0.935 50 H 0.054 0.946 51 H 0.053 0.947 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.673 -13.850 6.410 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.176 4.176 4 C 0.322 3.678 5 O -0.425 6.425 6 N -0.367 5.367 7 C -0.014 4.014 8 C -0.087 4.087 9 C -0.126 4.126 10 C 0.015 3.985 11 H 0.082 0.918 12 O -0.383 6.383 13 C 0.043 3.957 14 H 0.077 0.923 15 N -0.374 5.374 16 C -0.469 4.469 17 H 0.082 0.918 18 C -0.239 4.239 19 N -0.585 5.585 20 Si 0.909 3.091 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.222 1.222 24 C -0.151 4.151 25 C 0.049 3.951 26 H 0.106 0.894 27 C -0.115 4.115 28 C -0.207 4.207 29 C -0.201 4.201 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.225 0.775 42 H 0.201 0.799 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.084 0.916 50 H 0.073 0.927 51 H 0.072 0.928 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.980 -13.735 5.963 19.176 hybrid contribution -0.478 -0.827 0.426 1.046 sum -12.457 -14.562 6.389 20.200 Atomic orbital electron populations 1.21793 0.95535 1.01835 1.01821 1.21271 0.95172 0.94782 1.03377 1.21667 0.91860 0.99821 1.04248 1.20417 0.89808 0.82100 0.75466 1.90680 1.70564 1.30496 1.50772 1.50316 1.08530 1.05278 1.72569 1.23412 0.98145 0.78574 1.01301 1.22273 0.95468 0.94394 0.96613 1.21918 1.02034 0.95988 0.92626 1.23580 0.82307 0.93690 0.98905 0.91849 1.86310 1.28214 1.30897 1.92845 1.21564 0.91763 0.90486 0.91860 0.92316 1.42544 1.02627 1.12667 1.79556 1.20001 0.94683 0.90715 1.41496 0.91809 1.25770 0.92366 1.04973 1.00828 1.70892 1.20508 1.18968 1.48096 0.83267 0.75328 0.74828 0.75701 1.21004 1.22205 1.22217 1.22428 1.00315 0.93114 0.99196 1.22600 0.83277 0.93143 0.96125 0.89371 1.21281 0.98506 0.98369 0.93393 1.22094 0.98707 1.01339 0.98592 1.21798 1.00982 0.96566 1.00756 0.92736 0.92627 0.92483 0.91328 0.91437 0.89278 0.89059 0.88698 0.89581 0.91092 0.90381 0.77532 0.79859 0.93288 0.90708 0.91147 0.89230 0.92674 0.92821 0.91629 0.92689 0.92788 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.11 -1.03 5.22 -26.73 -0.14 -1.17 16 3 C -0.14 -1.32 5.44 -27.88 -0.15 -1.48 16 4 C 0.53 6.98 8.01 -10.98 -0.09 6.89 16 5 O -0.55 -9.04 16.71 5.56 0.09 -8.94 16 6 N -0.63 -7.67 2.34 -178.24 -0.42 -8.08 16 7 C 0.11 1.20 6.99 -3.54 -0.02 1.18 16 8 C -0.09 -1.09 0.77 -154.64 -0.12 -1.21 16 9 C -0.09 -1.26 5.93 -25.66 -0.15 -1.41 16 10 C 0.08 1.29 4.06 -25.43 -0.10 1.19 16 11 H 0.06 1.25 7.92 -51.93 -0.41 0.84 16 12 O -0.58 -9.17 13.22 -35.23 -0.47 -9.64 16 13 C 0.15 2.75 3.36 -66.63 -0.22 2.52 16 14 H 0.06 1.10 7.91 -51.93 -0.41 0.69 16 15 N -0.73 -16.72 5.04 -52.17 -0.26 -16.98 16 16 C -0.34 -8.82 9.96 -15.06 -0.15 -8.97 16 17 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 18 C -0.04 -1.14 5.50 -17.43 -0.10 -1.23 16 19 N -0.94 -27.88 13.70 55.49 0.76 -27.12 16 20 Si 1.08 24.78 29.92 -169.99 -5.09 19.69 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 C -0.11 -1.60 4.48 -25.66 -0.11 -1.71 16 25 C 0.15 1.87 3.92 -67.42 -0.26 1.61 16 26 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 27 C -0.10 -1.07 2.53 -90.62 -0.23 -1.30 16 28 C -0.15 -1.54 7.53 37.16 0.28 -1.26 16 29 C -0.14 -1.62 9.17 37.15 0.34 -1.28 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.07 0.70 8.10 -51.93 -0.42 0.27 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 37 H 0.10 0.95 5.08 -51.93 -0.26 0.68 16 38 H 0.09 0.97 8.12 -51.93 -0.42 0.55 16 39 H 0.07 1.03 7.99 -51.93 -0.41 0.62 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.38 5.34 9.10 45.56 0.41 5.75 16 42 H 0.37 8.78 6.36 -40.82 -0.26 8.52 16 43 H 0.26 7.44 6.77 -40.82 -0.28 7.16 16 44 H 0.07 1.12 7.24 -51.93 -0.38 0.74 16 45 H 0.07 0.93 6.26 -51.93 -0.33 0.61 16 46 H 0.09 1.00 6.99 -51.93 -0.36 0.64 16 47 H 0.05 0.59 6.76 -51.93 -0.35 0.24 16 48 H 0.05 0.51 8.13 -51.93 -0.42 0.09 16 49 H 0.06 0.65 4.43 -51.93 -0.23 0.42 16 50 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 399.50 15.07 6.02 6.02 Total: -1.00 -31.30 399.50 -8.61 -39.91 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -8.38 Total: 13.54 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -0.87 Total: -8.39 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.08 Total: -52.19 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.37 Total: -18.58 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.09 Total: 19.69 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.30 -8.61 -39.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093429002.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.656 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds