Wall clock time and date at job start Tue Mar 31 2020 13:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47494 * 2 1 4 4 C 1.50700 * 109.47087 * 180.02562 * 3 2 1 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99859 * 179.97438 * 4 3 2 7 7 C 1.47852 * 134.35849 * 0.05864 * 6 4 3 8 8 C 1.52538 * 85.64910 * 203.56136 * 7 6 4 9 9 C 1.53533 * 116.18837 * 95.37258 * 8 7 6 10 10 C 1.54520 * 104.03948 * 93.20684 * 9 8 7 11 11 H 1.08998 * 110.01231 * 141.50173 * 10 9 8 12 12 O 1.42900 * 110.04553 * 262.85557 * 10 9 8 13 13 C 1.53957 * 106.70160 * 22.18815 * 10 9 8 14 14 H 1.08997 * 110.01708 * 240.64857 * 13 10 9 15 15 N 1.46501 * 110.01274 * 119.31474 * 13 10 9 16 16 C 1.36942 * 119.99926 * 86.45395 * 15 13 10 17 17 H 1.07998 * 119.99699 * 0.02562 * 16 15 13 18 18 C 1.38808 * 119.99806 * 180.02562 * 16 15 13 19 19 N 1.31620 * 120.00168 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99705 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47228 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47513 * 59.99687 * 20 18 16 23 23 H 1.48506 * 109.47300 * 300.00000 * 20 18 16 24 24 C 1.53529 * 116.18572 * 218.92152 * 8 7 6 25 25 C 1.47863 * 134.35972 * 179.97438 * 6 4 3 26 26 H 1.09003 * 113.83525 * 42.26217 * 25 6 4 27 27 C 1.52995 * 113.84581 * 270.62237 * 25 6 4 28 28 C 1.53001 * 109.47329 * 329.62984 * 27 25 6 29 29 C 1.52995 * 109.47404 * 89.63357 * 27 25 6 30 30 H 1.09007 * 109.46521 * 300.00018 * 1 2 3 31 31 H 1.08997 * 109.46941 * 59.99895 * 1 2 3 32 32 H 1.08997 * 109.47114 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46730 * 239.99472 * 2 1 3 34 34 H 1.09006 * 109.46958 * 120.00263 * 2 1 3 35 35 H 1.08997 * 109.47444 * 59.99938 * 3 2 1 36 36 H 1.09009 * 109.46881 * 299.99711 * 3 2 1 37 37 H 1.08995 * 113.84899 * 89.38239 * 7 6 4 38 38 H 1.09001 * 113.84475 * 317.73454 * 7 6 4 39 39 H 1.09001 * 110.51471 * 334.56356 * 9 8 7 40 40 H 1.09006 * 110.62736 * 211.90074 * 9 8 7 41 41 H 0.96704 * 113.99778 * 178.74149 * 12 10 9 42 42 H 0.97003 * 119.99979 * 266.45293 * 15 13 10 43 43 H 0.96999 * 119.99751 * 0.02562 * 19 18 16 44 44 H 1.09002 * 110.51763 * 148.15924 * 24 8 7 45 45 H 1.09002 * 110.51638 * 25.43472 * 24 8 7 46 46 H 1.09006 * 109.46934 * 209.63410 * 27 25 6 47 47 H 1.09005 * 109.46889 * 51.86012 * 28 27 25 48 48 H 1.09001 * 109.47387 * 171.85485 * 28 27 25 49 49 H 1.08997 * 109.46906 * 291.86260 * 28 27 25 50 50 H 1.09002 * 109.46861 * 57.79064 * 29 27 25 51 51 H 1.08999 * 109.47602 * 177.79172 * 29 27 25 52 52 H 1.09006 * 109.47201 * 297.79350 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 -0.0006 5 8 4.1535 0.3920 -0.0006 6 7 4.2210 2.6095 -0.0013 7 6 3.8225 4.0333 -0.0004 8 6 5.1954 4.2978 -0.6102 9 6 5.2496 4.3941 -2.1415 10 6 5.0988 5.9050 -2.4277 11 1 5.7444 6.1938 -3.2571 12 8 3.7380 6.2113 -2.7381 13 6 5.5258 6.6429 -1.1458 14 1 4.6948 7.2342 -0.7612 15 7 6.6717 7.5119 -1.4255 16 6 6.4690 8.7835 -1.8913 17 1 5.4645 9.1460 -2.0521 18 6 7.5548 9.6066 -2.1569 19 7 8.7790 9.1650 -1.9604 20 14 7.2783 11.3410 -2.7930 21 1 8.5892 12.0086 -2.9962 22 1 6.4789 12.1092 -1.8051 23 1 6.5471 11.2841 -4.0843 24 6 5.9231 5.5577 -0.1200 25 6 5.6535 2.9762 -0.0015 26 1 6.2632 2.3702 -0.6718 27 6 6.2565 3.1155 1.3977 28 6 5.1753 3.5812 2.3750 29 6 6.8070 1.7626 1.8529 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5140 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8899 36 1 1.6768 1.9563 -0.8901 37 1 3.6946 4.4546 0.9966 38 1 2.9923 4.2589 -0.6698 39 1 4.4267 3.8365 -2.5887 40 1 6.2057 4.0279 -2.5157 41 1 3.5750 7.1491 -2.9089 42 1 7.5739 7.1864 -1.2807 43 1 8.9225 8.2642 -1.6304 44 1 7.0020 5.4027 -0.1265 45 1 5.5816 5.8321 0.8781 46 1 7.0643 3.8471 1.3739 47 1 4.3059 2.9288 2.2928 48 1 5.5640 3.5419 3.3926 49 1 4.8857 4.6044 2.1358 50 1 7.5493 1.4124 1.1356 51 1 7.2715 1.8704 2.8330 52 1 5.9924 1.0409 1.9143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093429002.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:39 Heat of formation + Delta-G solvation = -76.362070 kcal Electronic energy + Delta-G solvation = -29662.816708 eV Core-core repulsion = 25855.225334 eV Total energy + Delta-G solvation = -3807.591374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.59431 -39.96218 -38.62172 -36.37483 -35.37059 -35.16541 -34.56272 -32.26913 -30.05419 -29.35737 -28.32392 -27.95903 -26.96183 -25.67376 -24.78363 -22.73649 -21.76077 -20.99763 -20.41903 -19.42439 -18.99589 -18.31289 -17.92625 -17.40764 -17.05835 -16.78685 -16.22668 -15.87495 -15.62942 -15.42615 -15.25900 -14.91398 -14.61724 -14.37063 -14.24401 -13.97985 -13.86751 -13.36843 -13.20658 -13.12183 -12.95658 -12.87173 -12.76202 -12.67026 -12.62779 -12.42657 -12.29355 -12.07332 -12.03754 -11.88978 -11.83546 -11.70251 -11.67536 -11.60508 -11.29237 -11.18740 -11.08368 -10.69344 -10.63542 -9.61488 -9.06545 -8.34610 -5.29846 1.61148 1.62949 1.69828 1.81355 1.85513 2.72926 3.13406 3.25944 3.37383 3.49721 3.54620 3.79212 3.80251 3.87687 3.96560 4.01947 4.04705 4.07596 4.28037 4.38303 4.43735 4.45685 4.46750 4.55379 4.61206 4.64511 4.66207 4.69225 4.72103 4.76617 4.81982 4.84984 4.92174 4.93642 4.95731 5.00044 5.01021 5.13427 5.16245 5.19705 5.22415 5.24782 5.32105 5.39377 5.42538 5.44570 5.63248 6.53344 6.75223 6.83246 7.12896 7.16444 8.02459 8.14087 9.17141 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.003160 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.842810 B = 8859.393066 C = 9805.792383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.130 4.130 4 C 0.525 3.475 5 O -0.588 6.588 6 N -0.630 5.630 7 C 0.116 3.884 8 C -0.077 4.077 9 C -0.082 4.082 10 C 0.087 3.913 11 H 0.029 0.971 12 O -0.574 6.574 13 C 0.151 3.849 14 H 0.057 0.943 15 N -0.743 5.743 16 C -0.327 4.327 17 H 0.071 0.929 18 C -0.104 4.104 19 N -0.978 5.978 20 Si 1.123 2.877 21 H -0.299 1.299 22 H -0.277 1.277 23 H -0.279 1.279 24 C -0.100 4.100 25 C 0.150 3.850 26 H 0.073 0.927 27 C -0.094 4.094 28 C -0.146 4.146 29 C -0.138 4.138 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.385 0.615 42 H 0.360 0.640 43 H 0.245 0.755 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.051 0.949 48 H 0.062 0.938 49 H 0.072 0.928 50 H 0.049 0.951 51 H 0.068 0.932 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.065 -13.482 7.398 21.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.169 4.169 4 C 0.317 3.683 5 O -0.469 6.469 6 N -0.363 5.363 7 C -0.005 4.005 8 C -0.079 4.079 9 C -0.120 4.120 10 C 0.025 3.975 11 H 0.047 0.953 12 O -0.380 6.380 13 C 0.042 3.958 14 H 0.075 0.925 15 N -0.385 5.385 16 C -0.459 4.459 17 H 0.089 0.911 18 C -0.295 4.295 19 N -0.626 5.626 20 Si 0.949 3.051 21 H -0.225 1.225 22 H -0.203 1.203 23 H -0.205 1.205 24 C -0.139 4.139 25 C 0.047 3.953 26 H 0.091 0.909 27 C -0.114 4.114 28 C -0.203 4.203 29 C -0.196 4.196 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.234 0.766 42 H 0.192 0.808 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.091 0.909 50 H 0.068 0.932 51 H 0.087 0.913 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.441 -13.378 6.958 20.879 hybrid contribution 0.229 -1.005 0.095 1.036 sum -14.212 -14.384 7.054 21.415 Atomic orbital electron populations 1.21753 0.93535 1.02460 1.02665 1.21240 0.96807 0.94480 1.01928 1.21711 0.89118 1.00238 1.05834 1.21067 0.91181 0.81533 0.74545 1.90663 1.71636 1.31944 1.52706 1.50333 1.08365 1.05660 1.71986 1.23500 0.97051 0.77610 1.02364 1.22121 0.96729 0.93788 0.95217 1.21849 1.02005 0.94072 0.94092 1.23268 0.82222 0.95032 0.96951 0.95257 1.86308 1.27234 1.31778 1.92705 1.21774 0.90117 0.90762 0.93193 0.92461 1.42739 1.03671 1.12529 1.79575 1.20362 0.94723 0.91675 1.39093 0.91093 1.27048 0.92154 1.08428 1.01912 1.70993 1.21833 1.18790 1.50998 0.82676 0.74891 0.71278 0.76301 1.22530 1.20279 1.20499 1.22309 1.00131 0.92456 0.98988 1.22591 0.83616 0.92443 0.96687 0.90922 1.21278 0.98932 0.98323 0.92828 1.22060 0.98094 1.01433 0.98739 1.21740 1.00212 0.96150 1.01464 0.91619 0.91971 0.92073 0.93095 0.92700 0.87069 0.87751 0.86661 0.88865 0.90852 0.90712 0.76628 0.80801 0.94428 0.91460 0.89354 0.88971 0.93025 0.91889 0.90944 0.93201 0.91339 0.94279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.10 16 2 C -0.11 -1.90 5.22 30.59 0.16 -1.74 16 3 C -0.13 -2.23 5.44 29.85 0.16 -2.07 16 4 C 0.52 13.15 8.01 87.66 0.70 13.85 16 5 O -0.59 -19.52 16.71 -3.03 -0.05 -19.57 16 6 N -0.63 -14.19 2.34 -836.20 -1.96 -16.14 16 7 C 0.12 2.25 6.99 85.97 0.60 2.85 16 8 C -0.08 -1.82 0.77 -52.05 -0.04 -1.86 16 9 C -0.08 -2.29 5.93 31.29 0.19 -2.10 16 10 C 0.09 2.85 4.06 31.43 0.13 2.98 16 11 H 0.03 1.17 7.92 -2.39 -0.02 1.15 16 12 O -0.57 -17.21 13.22 -148.98 -1.97 -19.18 16 13 C 0.15 5.20 3.36 45.83 0.15 5.35 16 14 H 0.06 2.02 7.91 -2.39 -0.02 2.00 16 15 N -0.74 -33.98 5.04 -318.96 -1.61 -35.59 16 16 C -0.33 -16.94 9.96 84.03 0.84 -16.10 16 17 H 0.07 3.51 7.83 -2.91 -0.02 3.48 16 18 C -0.10 -5.74 5.50 84.86 0.47 -5.28 16 19 N -0.98 -59.11 13.70 21.65 0.30 -58.82 16 20 Si 1.12 49.70 29.92 68.60 2.05 51.75 16 21 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 24 C -0.10 -2.70 4.48 31.29 0.14 -2.56 16 25 C 0.15 3.54 3.92 44.58 0.17 3.71 16 26 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 27 C -0.09 -1.96 2.53 -10.80 -0.03 -1.99 16 28 C -0.15 -2.61 7.53 71.98 0.54 -2.07 16 29 C -0.14 -3.02 9.17 71.98 0.66 -2.36 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 34 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.12 1.84 5.08 -2.39 -0.01 1.83 16 38 H 0.09 1.75 8.12 -2.39 -0.02 1.74 16 39 H 0.07 2.03 7.99 -2.39 -0.02 2.01 16 40 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.39 10.22 9.10 -74.05 -0.67 9.54 16 42 H 0.36 17.50 6.36 -92.71 -0.59 16.91 16 43 H 0.25 14.69 6.77 -92.71 -0.63 14.07 16 44 H 0.07 1.96 7.24 -2.39 -0.02 1.94 16 45 H 0.09 2.09 6.26 -2.39 -0.01 2.07 16 46 H 0.09 1.90 6.99 -2.38 -0.02 1.89 16 47 H 0.05 0.97 6.76 -2.38 -0.02 0.95 16 48 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 49 H 0.07 1.18 4.43 -2.39 -0.01 1.17 16 50 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 52 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -68.35 399.50 2.12 -66.23 By element: Atomic # 1 Polarization: 41.99 SS G_CDS: -0.21 Total: 41.78 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 5.56 Total: -10.47 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -3.27 Total: -110.55 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -2.02 Total: -38.75 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.05 Total: 51.75 kcal Total: -68.35 2.12 -66.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093429002.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.131 kcal (2) G-P(sol) polarization free energy of solvation -68.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds