Wall clock time and date at job start Tue Mar 31 2020 15:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99986 * 2 1 4 4 H 1.09007 * 109.47249 * 359.97438 * 3 2 1 5 5 C 1.53006 * 109.47142 * 239.99906 * 3 2 1 6 6 C 1.52999 * 109.46885 * 64.99706 * 5 3 2 7 7 C 1.52997 * 109.47404 * 119.99580 * 3 2 1 8 8 C 1.50706 * 109.47180 * 294.99923 * 7 3 2 9 9 O 1.21273 * 119.99877 * 0.02562 * 8 7 3 10 10 N 1.34770 * 119.99662 * 179.97438 * 8 7 3 11 11 C 1.46929 * 120.63319 * 359.72337 * 10 8 7 12 12 C 1.53620 * 108.54519 * 126.37003 * 11 10 8 13 13 C 1.53046 * 109.24412 * 54.85141 * 12 11 10 14 14 N 1.46493 * 109.46408 * 178.49047 * 13 12 11 15 15 C 1.36941 * 119.99735 * 60.06695 * 14 13 12 16 16 H 1.08004 * 120.00205 * 326.30635 * 15 14 13 17 17 C 1.38813 * 119.99716 * 146.29757 * 15 14 13 18 18 N 1.31614 * 120.00274 * 337.22487 * 17 15 14 19 19 Si 1.86807 * 119.99522 * 157.22263 * 17 15 14 20 20 H 1.48489 * 109.47516 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46770 * 120.00594 * 19 17 15 22 22 H 1.48506 * 109.46958 * 240.00108 * 19 17 15 23 23 C 1.46499 * 120.00690 * 240.07283 * 14 13 12 24 24 C 1.53002 * 109.47214 * 84.40833 * 23 14 13 25 25 O 1.42899 * 109.46900 * 65.00610 * 24 23 14 26 26 C 1.53037 * 109.53806 * 298.51647 * 13 12 11 27 27 C 1.46927 * 120.62915 * 180.02562 * 10 8 7 28 28 H 1.07998 * 119.99924 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99986 * 359.72813 * 1 2 3 30 30 H 1.07994 * 120.00215 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47012 * 184.99915 * 5 3 2 32 32 H 1.08994 * 109.46663 * 304.99939 * 5 3 2 33 33 H 1.08994 * 109.47279 * 60.00610 * 6 5 3 34 34 H 1.09003 * 109.46751 * 180.02562 * 6 5 3 35 35 H 1.08999 * 109.47321 * 299.99486 * 6 5 3 36 36 H 1.09002 * 109.47213 * 55.00265 * 7 3 2 37 37 H 1.09004 * 109.46923 * 174.99734 * 7 3 2 38 38 H 1.09004 * 109.58061 * 246.19871 * 11 10 8 39 39 H 1.09000 * 109.58687 * 6.62269 * 11 10 8 40 40 H 1.09001 * 109.63575 * 294.86689 * 12 11 10 41 41 H 1.08994 * 109.46097 * 174.73553 * 12 11 10 42 42 H 1.09005 * 109.44625 * 58.52757 * 13 12 11 43 43 H 0.97005 * 120.00051 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.47319 * 204.41284 * 23 14 13 45 45 H 1.09006 * 109.46732 * 324.41493 * 23 14 13 46 46 H 1.08995 * 109.47283 * 185.00137 * 24 23 14 47 47 H 1.08998 * 109.47429 * 305.00988 * 24 23 14 48 48 H 0.96692 * 114.00296 * 179.97438 * 25 24 23 49 49 H 1.09000 * 109.49703 * 301.40964 * 26 13 12 50 50 H 1.09009 * 109.52402 * 181.32907 * 26 13 12 51 51 H 1.09005 * 109.58199 * 353.37017 * 27 10 8 52 52 H 1.08998 * 109.58954 * 113.65232 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1337 -0.0005 5 6 2.9432 1.3862 -1.2493 6 6 2.0565 1.4306 -2.4953 7 6 2.9431 1.3863 1.2492 8 6 2.0696 1.4302 2.4766 9 8 0.8626 1.3992 2.3633 10 7 2.6300 1.5030 3.7001 11 6 4.0909 1.5342 3.8538 12 6 4.4670 2.7589 4.7015 13 6 3.6971 2.7131 6.0234 14 7 4.0792 3.8599 6.8509 15 6 3.8726 5.1338 6.3928 16 1 3.9606 5.3494 5.3381 17 6 3.5498 6.1480 7.2839 18 7 3.0100 5.8542 8.4478 19 14 3.8817 7.9297 6.8312 20 1 4.4885 7.9917 5.4774 21 1 2.6047 8.6877 6.8360 22 1 4.8151 8.5261 7.8204 23 6 4.6825 3.6442 8.1683 24 6 6.1887 3.4268 8.0101 25 8 6.7923 4.6212 7.5090 26 6 2.1937 2.7656 5.7421 27 6 1.7917 1.5461 4.9060 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0044 30 1 1.8500 -0.9352 0.0004 31 1 3.5540 2.2878 -1.2056 32 1 3.5906 0.5105 -1.2951 33 1 1.4091 2.3063 -2.4495 34 1 2.6832 1.4879 -3.3853 35 1 1.4457 0.5289 -2.5390 36 1 3.5906 0.5106 1.2952 37 1 3.5540 2.2880 1.2055 38 1 4.4252 0.6244 4.3527 39 1 4.5600 1.6090 2.8728 40 1 4.2098 3.6705 4.1622 41 1 5.5380 2.7455 4.9037 42 1 3.9358 1.7893 6.5506 43 1 2.7848 6.5630 9.0707 44 1 4.5054 4.5172 8.7964 45 1 4.2354 2.7654 8.6331 46 1 6.6237 3.1785 8.9782 47 1 6.3665 2.6093 7.3115 48 1 7.7489 4.5560 7.3841 49 1 1.9580 3.6772 5.1930 50 1 1.6462 2.7568 6.6847 51 1 0.7433 1.6288 4.6194 52 1 1.9409 0.6362 5.4874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098457706.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:10 Heat of formation + Delta-G solvation = -54.577314 kcal Electronic energy + Delta-G solvation = -29178.107173 eV Core-core repulsion = 25371.460457 eV Total energy + Delta-G solvation = -3806.646717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.03608 -37.87765 -36.68341 -36.00246 -34.57845 -32.13307 -31.79769 -31.16319 -30.26739 -29.76327 -27.67462 -25.34326 -24.33284 -23.20664 -22.45492 -21.71636 -20.71560 -19.93538 -19.56134 -18.57323 -17.00045 -16.58810 -16.13390 -15.70306 -15.52958 -14.85396 -14.73812 -14.57314 -14.38334 -13.98863 -13.71668 -13.61822 -13.51229 -13.21919 -12.93958 -12.75271 -12.51733 -12.23968 -12.09336 -12.01281 -11.82969 -11.50947 -11.32012 -11.26767 -11.15244 -10.92234 -10.88429 -10.73884 -10.62818 -10.54719 -10.45234 -10.08587 -9.86161 -9.82521 -9.56654 -9.44042 -9.10034 -9.04090 -8.35026 -8.27816 -6.54125 -5.69715 -3.19307 2.45946 2.91568 3.28396 3.45632 3.53435 3.56238 4.55490 4.58629 4.68131 4.79125 5.07008 5.12388 5.16548 5.17892 5.27606 5.28795 5.38659 5.41221 5.46771 5.53220 5.58170 5.63454 5.71022 5.77601 5.79086 5.83680 5.90189 5.98010 5.99920 6.03081 6.09507 6.10548 6.17788 6.22283 6.29344 6.40238 6.50845 6.63261 6.72668 6.74187 6.82235 6.87576 6.95955 7.14627 7.23475 7.71325 7.71983 7.91265 8.45064 8.46916 8.63594 9.27018 9.92711 10.45175 11.33447 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.003090 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.570804 B = 9059.325421 C = 9352.248575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.149 4.149 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.133 4.133 8 C 0.512 3.488 9 O -0.542 6.542 10 N -0.607 5.607 11 C 0.109 3.891 12 C -0.140 4.140 13 C 0.177 3.823 14 N -0.572 5.572 15 C -0.231 4.231 16 H 0.057 0.943 17 C 0.012 3.988 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.290 1.290 23 C 0.140 3.860 24 C 0.060 3.940 25 O -0.544 6.544 26 C -0.133 4.133 27 C 0.113 3.887 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.251 0.749 44 H 0.108 0.892 45 H 0.035 0.965 46 H 0.019 0.981 47 H 0.021 0.979 48 H 0.349 0.651 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.083 0.917 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 -12.624 -13.166 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C -0.064 4.064 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.173 4.173 8 C 0.300 3.700 9 O -0.419 6.419 10 N -0.341 5.341 11 C -0.015 4.015 12 C -0.180 4.180 13 C 0.069 3.931 14 N -0.291 5.291 15 C -0.361 4.361 16 H 0.075 0.925 17 C -0.186 4.186 18 N -0.538 5.538 19 Si 0.727 3.273 20 H -0.204 1.204 21 H -0.223 1.223 22 H -0.217 1.217 23 C 0.014 3.986 24 C -0.020 4.020 25 O -0.345 6.345 26 C -0.173 4.173 27 C -0.010 4.010 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.125 0.875 45 H 0.053 0.947 46 H 0.037 0.963 47 H 0.039 0.961 48 H 0.191 0.809 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.102 0.898 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.314 -12.307 -13.049 18.086 hybrid contribution 1.008 0.681 0.069 1.219 sum 3.322 -11.626 -12.980 17.739 Atomic orbital electron populations 1.23676 0.95943 1.01203 0.99381 1.22609 0.95962 0.97012 1.01164 1.20167 0.96620 0.97024 0.92551 0.90071 1.21541 0.97866 1.01931 0.94038 1.21756 0.99823 1.02112 0.97104 1.21732 0.98734 1.04011 0.92854 1.20568 0.88927 0.76071 0.84417 1.90666 1.14815 1.50198 1.86246 1.48175 1.07286 1.72511 1.06096 1.21905 0.79620 0.99321 1.00646 1.22437 1.00572 0.96739 0.98219 1.20297 0.91422 0.90735 0.90601 1.43768 1.68101 1.01129 1.16067 1.18807 1.40347 0.84036 0.92871 0.92497 1.24930 0.98157 0.98148 0.97412 1.69980 1.42552 1.31452 1.09862 0.86336 0.77250 0.85763 0.77953 1.20414 1.22278 1.21662 1.21063 0.86270 1.01829 0.89453 1.23093 0.98574 0.86199 0.94171 1.86856 1.22848 1.36658 1.88133 1.22303 0.98843 0.96763 0.99382 1.21705 0.95621 0.98701 0.84956 0.89403 0.88616 0.88294 0.91759 0.91948 0.92780 0.93019 0.92478 0.89231 0.88815 0.91984 0.90589 0.91273 0.91553 0.93638 0.93921 0.87471 0.94716 0.96314 0.96093 0.80864 0.91147 0.91148 0.89843 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 13.22 29.01 0.38 -1.56 16 2 C -0.15 -1.67 6.76 -36.03 -0.24 -1.91 16 3 C -0.04 -0.48 1.82 -91.77 -0.17 -0.65 16 4 H 0.08 1.03 7.60 -51.92 -0.39 0.63 16 5 C -0.12 -0.99 5.39 -26.73 -0.14 -1.13 16 6 C -0.15 -1.24 9.73 37.16 0.36 -0.88 16 7 C -0.13 -1.47 3.51 -27.88 -0.10 -1.57 16 8 C 0.51 7.66 7.45 -10.99 -0.08 7.58 16 9 O -0.54 -9.70 13.58 5.56 0.08 -9.63 16 10 N -0.61 -9.05 2.97 -172.48 -0.51 -9.56 16 11 C 0.11 1.40 6.37 -3.49 -0.02 1.38 16 12 C -0.14 -2.31 5.32 -26.39 -0.14 -2.45 16 13 C 0.18 3.39 2.59 -67.89 -0.18 3.21 16 14 N -0.57 -13.31 2.35 -165.61 -0.39 -13.70 16 15 C -0.23 -6.11 8.06 -15.06 -0.12 -6.24 16 16 H 0.06 1.55 6.87 -52.48 -0.36 1.19 16 17 C 0.01 0.34 4.90 -17.43 -0.09 0.25 16 18 N -0.89 -25.64 11.36 55.49 0.63 -25.01 16 19 Si 0.90 22.39 29.61 -169.99 -5.03 17.36 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 C 0.14 3.18 5.57 -4.04 -0.02 3.16 16 24 C 0.06 1.14 7.39 37.16 0.27 1.41 16 25 O -0.54 -11.08 13.40 -35.23 -0.47 -11.55 16 26 C -0.13 -2.56 5.31 -26.59 -0.14 -2.70 16 27 C 0.11 1.83 6.43 -3.69 -0.02 1.81 16 28 H 0.09 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.10 1.22 7.83 -52.49 -0.41 0.81 16 30 H 0.10 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 36 H 0.09 0.82 7.93 -51.93 -0.41 0.41 16 37 H 0.09 0.95 7.70 -51.93 -0.40 0.55 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.80 5.93 -51.93 -0.31 0.49 16 40 H 0.07 1.31 7.03 -51.93 -0.37 0.95 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.82 7.87 -51.93 -0.41 0.41 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.11 2.85 5.35 -51.93 -0.28 2.58 16 45 H 0.03 0.73 8.04 -51.93 -0.42 0.32 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.35 5.10 9.12 45.56 0.42 5.52 16 49 H 0.07 1.56 7.71 -51.93 -0.40 1.16 16 50 H 0.07 1.46 8.14 -51.92 -0.42 1.04 16 51 H 0.08 1.45 7.01 -51.93 -0.36 1.08 16 52 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 403.62 15.07 6.08 6.08 Total: -1.00 -31.64 403.62 -8.76 -40.40 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.70 Total: 5.89 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.45 Total: -0.29 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.27 Total: -48.27 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.40 Total: -21.18 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.64 -8.76 -40.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098457706.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.174 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds