Wall clock time and date at job start Tue Mar 31 2020 15:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99986 * 2 1 4 4 H 1.09007 * 109.47249 * 359.97438 * 3 2 1 5 5 C 1.53006 * 109.47142 * 239.99906 * 3 2 1 6 6 C 1.52999 * 109.46885 * 64.99706 * 5 3 2 7 7 C 1.52997 * 109.47404 * 119.99580 * 3 2 1 8 8 C 1.50706 * 109.47180 * 294.99923 * 7 3 2 9 9 O 1.21273 * 119.99877 * 0.02562 * 8 7 3 10 10 N 1.34770 * 119.99662 * 179.97438 * 8 7 3 11 11 C 1.46929 * 120.63319 * 359.72337 * 10 8 7 12 12 C 1.53620 * 108.54519 * 126.37003 * 11 10 8 13 13 C 1.53046 * 109.24412 * 54.85141 * 12 11 10 14 14 N 1.46493 * 109.46408 * 178.49047 * 13 12 11 15 15 C 1.36941 * 119.99735 * 60.06695 * 14 13 12 16 16 H 1.08004 * 120.00205 * 326.30635 * 15 14 13 17 17 C 1.38813 * 119.99716 * 146.29757 * 15 14 13 18 18 N 1.31614 * 120.00274 * 337.22487 * 17 15 14 19 19 Si 1.86807 * 119.99522 * 157.22263 * 17 15 14 20 20 H 1.48489 * 109.47516 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46770 * 120.00594 * 19 17 15 22 22 H 1.48506 * 109.46958 * 240.00108 * 19 17 15 23 23 C 1.46499 * 120.00690 * 240.07283 * 14 13 12 24 24 C 1.53002 * 109.47214 * 84.40833 * 23 14 13 25 25 O 1.42899 * 109.46900 * 65.00610 * 24 23 14 26 26 C 1.53037 * 109.53806 * 298.51647 * 13 12 11 27 27 C 1.46927 * 120.62915 * 180.02562 * 10 8 7 28 28 H 1.07998 * 119.99924 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99986 * 359.72813 * 1 2 3 30 30 H 1.07994 * 120.00215 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47012 * 184.99915 * 5 3 2 32 32 H 1.08994 * 109.46663 * 304.99939 * 5 3 2 33 33 H 1.08994 * 109.47279 * 60.00610 * 6 5 3 34 34 H 1.09003 * 109.46751 * 180.02562 * 6 5 3 35 35 H 1.08999 * 109.47321 * 299.99486 * 6 5 3 36 36 H 1.09002 * 109.47213 * 55.00265 * 7 3 2 37 37 H 1.09004 * 109.46923 * 174.99734 * 7 3 2 38 38 H 1.09004 * 109.58061 * 246.19871 * 11 10 8 39 39 H 1.09000 * 109.58687 * 6.62269 * 11 10 8 40 40 H 1.09001 * 109.63575 * 294.86689 * 12 11 10 41 41 H 1.08994 * 109.46097 * 174.73553 * 12 11 10 42 42 H 1.09005 * 109.44625 * 58.52757 * 13 12 11 43 43 H 0.97005 * 120.00051 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.47319 * 204.41284 * 23 14 13 45 45 H 1.09006 * 109.46732 * 324.41493 * 23 14 13 46 46 H 1.08995 * 109.47283 * 185.00137 * 24 23 14 47 47 H 1.08998 * 109.47429 * 305.00988 * 24 23 14 48 48 H 0.96692 * 114.00296 * 179.97438 * 25 24 23 49 49 H 1.09000 * 109.49703 * 301.40964 * 26 13 12 50 50 H 1.09009 * 109.52402 * 181.32907 * 26 13 12 51 51 H 1.09005 * 109.58199 * 353.37017 * 27 10 8 52 52 H 1.08998 * 109.58954 * 113.65232 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1337 -0.0005 5 6 2.9432 1.3862 -1.2493 6 6 2.0565 1.4306 -2.4953 7 6 2.9431 1.3863 1.2492 8 6 2.0696 1.4302 2.4766 9 8 0.8626 1.3992 2.3633 10 7 2.6300 1.5030 3.7001 11 6 4.0909 1.5342 3.8538 12 6 4.4670 2.7589 4.7015 13 6 3.6971 2.7131 6.0234 14 7 4.0792 3.8599 6.8509 15 6 3.8726 5.1338 6.3928 16 1 3.9606 5.3494 5.3381 17 6 3.5498 6.1480 7.2839 18 7 3.0100 5.8542 8.4478 19 14 3.8817 7.9297 6.8312 20 1 4.4885 7.9917 5.4774 21 1 2.6047 8.6877 6.8360 22 1 4.8151 8.5261 7.8204 23 6 4.6825 3.6442 8.1683 24 6 6.1887 3.4268 8.0101 25 8 6.7923 4.6212 7.5090 26 6 2.1937 2.7656 5.7421 27 6 1.7917 1.5461 4.9060 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0044 30 1 1.8500 -0.9352 0.0004 31 1 3.5540 2.2878 -1.2056 32 1 3.5906 0.5105 -1.2951 33 1 1.4091 2.3063 -2.4495 34 1 2.6832 1.4879 -3.3853 35 1 1.4457 0.5289 -2.5390 36 1 3.5906 0.5106 1.2952 37 1 3.5540 2.2880 1.2055 38 1 4.4252 0.6244 4.3527 39 1 4.5600 1.6090 2.8728 40 1 4.2098 3.6705 4.1622 41 1 5.5380 2.7455 4.9037 42 1 3.9358 1.7893 6.5506 43 1 2.7848 6.5630 9.0707 44 1 4.5054 4.5172 8.7964 45 1 4.2354 2.7654 8.6331 46 1 6.6237 3.1785 8.9782 47 1 6.3665 2.6093 7.3115 48 1 7.7489 4.5560 7.3841 49 1 1.9580 3.6772 5.1930 50 1 1.6462 2.7568 6.6847 51 1 0.7433 1.6288 4.6194 52 1 1.9409 0.6362 5.4874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098457706.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:09 Heat of formation + Delta-G solvation = -74.583558 kcal Electronic energy + Delta-G solvation = -29178.974709 eV Core-core repulsion = 25371.460457 eV Total energy + Delta-G solvation = -3807.514252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.21835 -39.23980 -37.88958 -37.27666 -36.16804 -33.81700 -32.61172 -32.51810 -31.79628 -30.82282 -29.36462 -26.72386 -25.67348 -24.61053 -23.75763 -22.50788 -22.25784 -21.45757 -20.54749 -19.79631 -18.36532 -18.16444 -17.70746 -16.90744 -16.68366 -16.55039 -16.05234 -15.67596 -15.59207 -15.45535 -15.00428 -14.85832 -14.62428 -14.52750 -14.27886 -14.03534 -13.85991 -13.60479 -13.30760 -13.06447 -13.00679 -12.95788 -12.77930 -12.74732 -12.55464 -12.32248 -12.17887 -12.02516 -11.99790 -11.80750 -11.66958 -11.58852 -11.46721 -11.32771 -11.10843 -10.72452 -10.58747 -10.36470 -9.98267 -9.51178 -8.48342 -7.74291 -5.25497 1.43069 1.47056 1.54561 1.57629 1.78203 2.14991 2.56928 3.36235 3.55409 3.63855 3.85935 3.86604 3.94412 4.01531 4.20209 4.28056 4.33697 4.40914 4.45809 4.48478 4.48597 4.59005 4.60397 4.64836 4.68212 4.73622 4.80599 4.85448 4.90085 4.93451 4.96952 5.02908 5.08541 5.10179 5.12808 5.15579 5.21219 5.26371 5.42146 5.49028 5.51144 5.62163 5.71642 5.76925 5.85675 5.88109 6.10720 6.54389 6.57670 7.24058 7.30392 7.31910 8.00664 8.46310 9.23885 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.003090 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.570804 B = 9059.325421 C = 9352.248575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.144 4.144 3 C -0.045 4.045 4 H 0.052 0.948 5 C -0.110 4.110 6 C -0.152 4.152 7 C -0.127 4.127 8 C 0.503 3.497 9 O -0.579 6.579 10 N -0.611 5.611 11 C 0.115 3.885 12 C -0.128 4.128 13 C 0.172 3.828 14 N -0.585 5.585 15 C -0.215 4.215 16 H 0.046 0.954 17 C -0.040 4.040 18 N -0.923 5.923 19 Si 0.942 3.058 20 H -0.273 1.273 21 H -0.300 1.300 22 H -0.295 1.295 23 C 0.133 3.867 24 C 0.070 3.930 25 O -0.576 6.576 26 C -0.121 4.121 27 C 0.124 3.876 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.244 0.756 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.043 0.957 47 H 0.045 0.955 48 H 0.375 0.625 49 H 0.030 0.970 50 H 0.045 0.955 51 H 0.065 0.935 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.494 -15.062 -14.880 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.161 4.161 3 C -0.064 4.064 4 H 0.070 0.930 5 C -0.148 4.148 6 C -0.209 4.209 7 C -0.166 4.166 8 C 0.293 3.707 9 O -0.459 6.459 10 N -0.344 5.344 11 C -0.007 4.007 12 C -0.168 4.168 13 C 0.066 3.934 14 N -0.304 5.304 15 C -0.346 4.346 16 H 0.064 0.936 17 C -0.235 4.235 18 N -0.570 5.570 19 Si 0.773 3.227 20 H -0.198 1.198 21 H -0.228 1.228 22 H -0.222 1.222 23 C 0.007 3.993 24 C -0.009 4.009 25 O -0.381 6.381 26 C -0.161 4.161 27 C 0.001 3.999 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.141 0.859 37 H 0.126 0.874 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.221 0.779 49 H 0.049 0.951 50 H 0.064 0.936 51 H 0.084 0.916 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.196 -14.765 -14.789 21.534 hybrid contribution 0.113 1.408 0.597 1.533 sum 5.309 -13.357 -14.192 20.199 Atomic orbital electron populations 1.23684 0.96615 1.00780 1.01054 1.22835 0.95753 0.97927 0.99625 1.20163 0.96549 0.95828 0.93866 0.92955 1.21514 0.97556 1.03171 0.92512 1.21764 0.99904 1.01433 0.97809 1.21793 0.98326 1.06124 0.90348 1.21368 0.88996 0.74970 0.85322 1.90664 1.16750 1.51703 1.86755 1.48289 1.08144 1.72338 1.05607 1.22044 0.78213 0.98368 1.02115 1.22256 1.00471 0.97440 0.96666 1.20532 0.91200 0.90000 0.91679 1.43956 1.68617 1.01204 1.16635 1.18854 1.37914 0.85669 0.92176 0.93628 1.25445 0.99464 1.00717 0.97889 1.70096 1.44607 1.31582 1.10684 0.85600 0.76585 0.82923 0.77627 1.19807 1.22825 1.22221 1.21024 0.89311 1.00362 0.88588 1.22851 0.95682 0.86297 0.96095 1.86773 1.25349 1.37654 1.88364 1.22123 0.99206 0.96613 0.98188 1.21443 0.95074 0.97868 0.85544 0.88427 0.90659 0.86340 0.90997 0.90070 0.93876 0.91634 0.92889 0.85943 0.87388 0.89133 0.87140 0.94317 0.90675 0.91524 0.94676 0.91606 0.93830 0.93888 0.93720 0.77900 0.95149 0.93604 0.91606 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.33 13.22 67.78 0.90 -3.43 16 2 C -0.14 -2.94 6.76 25.64 0.17 -2.76 16 3 C -0.05 -0.88 1.82 -11.54 -0.02 -0.90 16 4 H 0.05 1.33 7.60 -2.38 -0.02 1.31 16 5 C -0.11 -1.54 5.39 30.60 0.16 -1.38 16 6 C -0.15 -2.22 9.73 71.98 0.70 -1.52 16 7 C -0.13 -2.35 3.51 29.85 0.10 -2.24 16 8 C 0.50 14.12 7.45 87.66 0.65 14.78 16 9 O -0.58 -20.71 13.58 -3.01 -0.04 -20.75 16 10 N -0.61 -16.74 2.97 -817.99 -2.43 -19.17 16 11 C 0.11 2.46 6.37 86.51 0.55 3.01 16 12 C -0.13 -3.92 5.32 30.82 0.16 -3.76 16 13 C 0.17 6.38 2.59 45.02 0.12 6.50 16 14 N -0.58 -27.14 2.35 -677.87 -1.59 -28.73 16 15 C -0.22 -11.58 8.06 84.03 0.68 -10.91 16 16 H 0.05 2.54 6.87 -2.91 -0.02 2.52 16 17 C -0.04 -2.26 4.90 84.86 0.42 -1.84 16 18 N -0.92 -54.86 11.36 21.65 0.25 -54.61 16 19 Si 0.94 47.15 29.61 68.60 2.03 49.18 16 20 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 22 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 23 C 0.13 5.98 5.57 86.38 0.48 6.46 16 24 C 0.07 2.50 7.39 71.98 0.53 3.03 16 25 O -0.58 -22.37 13.40 -148.98 -2.00 -24.37 16 26 C -0.12 -4.74 5.31 30.68 0.16 -4.58 16 27 C 0.12 3.93 6.43 86.38 0.56 4.48 16 28 H 0.10 2.02 8.06 -2.91 -0.02 1.99 16 29 H 0.07 2.04 7.83 -2.91 -0.02 2.02 16 30 H 0.12 1.97 8.06 -2.91 -0.02 1.94 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.81 7.38 -2.39 -0.02 0.79 16 36 H 0.12 1.53 7.93 -2.39 -0.02 1.51 16 37 H 0.11 1.76 7.70 -2.38 -0.02 1.74 16 38 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.11 1.68 5.93 -2.39 -0.01 1.66 16 40 H 0.04 1.42 7.03 -2.39 -0.02 1.40 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.07 2.21 7.87 -2.38 -0.02 2.19 16 43 H 0.24 14.25 8.31 -92.70 -0.77 13.48 16 44 H 0.07 3.58 5.35 -2.39 -0.01 3.57 16 45 H 0.04 1.81 8.04 -2.38 -0.02 1.80 16 46 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.37 9.96 9.12 -74.06 -0.68 9.28 16 49 H 0.03 1.40 7.71 -2.39 -0.02 1.38 16 50 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 51 H 0.07 2.32 7.01 -2.38 -0.02 2.31 16 52 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -72.81 403.62 2.75 -70.06 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.20 Total: 23.46 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.33 Total: 4.93 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -3.77 Total: -102.51 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -2.04 Total: -45.12 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -72.81 2.75 -70.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098457706.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.526 kcal (2) G-P(sol) polarization free energy of solvation -72.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds