Wall clock time and date at job start Tue Mar 31 2020 15:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47321 * 2 1 4 4 H 1.08997 * 109.47151 * 54.99590 * 3 2 1 5 5 C 1.53002 * 109.47061 * 295.00199 * 3 2 1 6 6 C 1.50699 * 109.47129 * 174.99991 * 3 2 1 7 7 O 1.21275 * 120.00457 * 359.97438 * 6 3 2 8 8 N 1.34778 * 119.99867 * 179.97438 * 6 3 2 9 9 C 1.46494 * 120.00296 * 179.97438 * 8 6 3 10 10 H 1.09007 * 109.52657 * 35.08692 * 9 8 6 11 11 C 1.53186 * 109.49922 * 275.00239 * 9 8 6 12 12 N 1.46931 * 108.81331 * 185.39238 * 11 9 8 13 13 C 1.36940 * 120.64059 * 233.63134 * 12 11 9 14 14 H 1.08005 * 120.00200 * 152.06464 * 13 12 11 15 15 C 1.38814 * 120.00029 * 332.06210 * 13 12 11 16 16 N 1.31625 * 119.99554 * 335.33918 * 15 13 12 17 17 Si 1.86789 * 120.00299 * 155.33770 * 15 13 12 18 18 H 1.48497 * 109.47443 * 179.97438 * 17 15 13 19 19 H 1.48504 * 109.47143 * 300.00022 * 17 15 13 20 20 H 1.48497 * 109.47296 * 59.99729 * 17 15 13 21 21 C 1.46949 * 118.72155 * 53.89718 * 12 11 9 22 22 C 1.53556 * 108.50981 * 306.18039 * 21 12 11 23 23 C 1.53072 * 109.45803 * 174.84757 * 22 21 12 24 24 C 1.53115 * 109.16710 * 176.84484 * 23 22 21 25 25 O 1.42904 * 109.41143 * 302.52877 * 24 23 22 26 26 C 1.42903 * 114.12689 * 61.18432 * 25 24 23 27 27 C 1.53090 * 109.62632 * 294.61220 * 22 21 12 28 28 C 1.52946 * 109.40984 * 54.76588 * 22 21 12 29 29 H 1.09007 * 109.47455 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47045 * 299.99920 * 1 2 3 31 31 H 1.08998 * 109.47314 * 60.00440 * 1 2 3 32 32 H 1.09007 * 109.47251 * 239.99613 * 2 1 3 33 33 H 1.09004 * 109.47153 * 120.00462 * 2 1 3 34 34 H 1.08993 * 109.47349 * 59.99415 * 5 3 2 35 35 H 1.09007 * 109.46954 * 180.02562 * 5 3 2 36 36 H 1.09007 * 109.46716 * 299.99769 * 5 3 2 37 37 H 0.97005 * 119.99967 * 359.97438 * 8 6 3 38 38 H 1.08994 * 109.58096 * 65.59721 * 11 9 8 39 39 H 1.08994 * 109.69228 * 305.25774 * 11 9 8 40 40 H 0.97002 * 120.00267 * 354.24201 * 16 15 13 41 41 H 1.09003 * 109.58544 * 66.00664 * 21 12 11 42 42 H 1.08998 * 109.59619 * 186.44379 * 21 12 11 43 43 H 1.09000 * 109.52338 * 296.75167 * 23 22 21 44 44 H 1.09003 * 109.52268 * 56.93911 * 23 22 21 45 45 H 1.09000 * 109.47984 * 182.54880 * 24 23 22 46 46 H 1.08993 * 109.48058 * 62.51026 * 24 23 22 47 47 H 1.09001 * 109.48629 * 178.82445 * 26 25 24 48 48 H 1.09005 * 109.47991 * 58.77617 * 26 25 24 49 49 H 1.08995 * 109.52362 * 303.14832 * 27 22 21 50 50 H 1.09009 * 109.52318 * 63.33480 * 27 22 21 51 51 H 1.08997 * 109.46334 * 178.60224 * 28 22 21 52 52 H 1.09004 * 109.46124 * 58.63399 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3073 6 6 3.5419 1.4442 0.1238 7 8 4.1450 0.3951 0.2046 8 7 4.2150 2.6117 0.1448 9 6 5.6749 2.6135 0.2657 10 1 6.0857 1.7561 -0.2675 11 6 6.0656 2.5310 1.7446 12 7 7.5245 2.6642 1.8575 13 6 8.2612 1.7251 2.5286 14 1 9.2915 1.5507 2.2555 15 6 7.6839 0.9972 3.5600 16 7 6.6566 1.4904 4.2187 17 14 8.3648 -0.6821 4.0131 18 1 7.5785 -1.2478 5.1387 19 1 8.2716 -1.5872 2.8395 20 1 9.7859 -0.5463 4.4217 21 6 8.1771 3.8278 1.2413 22 6 7.7620 3.8942 -0.2356 23 6 8.3259 5.1696 -0.8669 24 6 7.9752 5.1903 -2.3572 25 8 8.4951 4.0159 -2.9838 26 6 7.9644 2.7941 -2.4662 27 6 8.3151 2.6765 -0.9804 28 6 6.2358 3.9049 -0.3346 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5490 2.1251 -1.3970 35 1 1.9990 3.1540 -1.3075 36 1 2.0699 1.5874 -2.1492 37 1 3.7327 3.4508 0.0798 38 1 5.7541 1.5691 2.1516 39 1 5.5814 3.3357 2.2978 40 1 6.3554 2.3952 4.0408 41 1 7.8625 4.7370 1.7536 42 1 9.2594 3.7208 1.3138 43 1 7.8905 6.0412 -0.3781 44 1 9.4092 5.1870 -0.7473 45 1 8.4130 6.0740 -2.8214 46 1 6.8920 5.2162 -2.4754 47 1 8.3943 1.9522 -3.0090 48 1 6.8810 2.7890 -2.5856 49 1 9.3982 2.6390 -0.8636 50 1 7.8722 1.7678 -0.5725 51 1 5.9402 3.9771 -1.3812 52 1 5.8423 4.7610 0.2136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099565519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:59 Heat of formation + Delta-G solvation = -84.462127 kcal Electronic energy + Delta-G solvation = -30410.300536 eV Core-core repulsion = 26602.357917 eV Total energy + Delta-G solvation = -3807.942619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.38642 -39.40269 -37.16156 -35.33265 -34.30705 -33.96209 -31.14675 -30.65559 -30.30671 -28.86951 -27.05279 -25.36116 -25.31323 -23.43517 -22.99474 -22.59880 -21.15858 -20.09142 -19.67004 -18.07003 -17.35452 -16.74080 -16.14321 -15.85210 -15.50099 -15.36622 -14.90507 -14.44627 -14.22750 -14.09841 -13.91360 -13.85545 -13.56906 -13.47352 -13.33938 -12.76622 -12.57359 -12.43663 -12.20677 -12.00082 -11.75166 -11.59605 -11.55047 -11.45753 -11.06542 -11.05222 -10.85617 -10.82048 -10.68026 -10.67338 -10.44102 -10.32080 -10.02376 -9.91523 -9.76351 -9.42688 -9.28421 -9.11154 -8.62839 -8.31900 -6.86669 -6.04213 -3.22206 3.02454 3.46414 3.53420 3.60215 3.75206 4.03164 4.60877 4.71860 4.79410 4.86696 4.91183 5.00564 5.08494 5.22065 5.27269 5.30519 5.31442 5.38342 5.39603 5.42641 5.49386 5.54040 5.55980 5.65772 5.72570 5.75046 5.80898 5.82676 5.86790 5.89890 5.98529 6.04360 6.05427 6.15608 6.21063 6.23675 6.29396 6.37438 6.42761 6.52579 6.66892 6.71392 6.73741 6.88109 6.99420 7.27405 7.35596 7.86488 8.03193 8.57761 8.64106 9.11121 9.85694 10.28044 11.23682 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.007833 B = 0.006064 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3573.928922 B = 4616.068036 C = 7312.895828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.112 4.112 4 H 0.094 0.906 5 C -0.143 4.143 6 C 0.512 3.488 7 O -0.531 6.531 8 N -0.725 5.725 9 C 0.122 3.878 10 H 0.088 0.912 11 C 0.146 3.854 12 N -0.590 5.590 13 C -0.351 4.351 14 H 0.057 0.943 15 C -0.018 4.018 16 N -0.912 5.912 17 Si 1.061 2.939 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.293 1.293 21 C 0.159 3.841 22 C -0.069 4.069 23 C -0.142 4.142 24 C 0.062 3.938 25 O -0.388 6.388 26 C 0.060 3.940 27 C -0.136 4.136 28 C -0.110 4.110 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.391 0.609 38 H 0.086 0.914 39 H 0.014 0.986 40 H 0.267 0.733 41 H 0.017 0.983 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.088 0.912 48 H 0.046 0.954 49 H 0.066 0.934 50 H 0.089 0.911 51 H 0.056 0.944 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 6.642 -12.800 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.133 4.133 4 H 0.112 0.888 5 C -0.200 4.200 6 C 0.297 3.703 7 O -0.406 6.406 8 N -0.376 5.376 9 C 0.017 3.983 10 H 0.106 0.894 11 C 0.019 3.981 12 N -0.313 5.313 13 C -0.480 4.480 14 H 0.074 0.926 15 C -0.221 4.221 16 N -0.551 5.551 17 Si 0.891 3.109 18 H -0.211 1.211 19 H -0.219 1.219 20 H -0.220 1.220 21 C 0.032 3.968 22 C -0.072 4.072 23 C -0.180 4.180 24 C -0.015 4.015 25 O -0.307 6.307 26 C -0.017 4.017 27 C -0.174 4.174 28 C -0.148 4.148 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.224 0.776 38 H 0.104 0.896 39 H 0.032 0.968 40 H 0.078 0.922 41 H 0.035 0.965 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.065 0.935 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.074 0.926 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.955 4.516 -11.865 14.982 hybrid contribution -0.169 1.916 -0.684 2.041 sum -8.125 6.432 -12.549 16.274 Atomic orbital electron populations 1.21839 0.95768 1.01710 1.01619 1.21332 0.94991 0.94412 1.03674 1.21349 0.92574 0.99264 1.00121 0.88762 1.21806 1.01956 1.00079 0.96165 1.20582 0.89627 0.83919 0.76132 1.90739 1.70084 1.31297 1.48500 1.46117 1.08256 1.08122 1.75058 1.21842 0.77913 0.98164 1.00430 0.89398 1.21267 0.84790 1.01244 0.90791 1.43994 1.01931 1.22889 1.62503 1.19900 0.97587 1.16663 1.13839 0.92565 1.25810 0.98794 1.04972 0.92492 1.70794 1.28620 1.17729 1.37994 0.83584 0.75017 0.76150 0.76152 1.21111 1.21876 1.22010 1.21040 0.96836 0.90069 0.88833 1.21059 0.93713 0.94069 0.98352 1.22167 1.01888 0.98201 0.95777 1.22550 0.97929 0.88103 0.92890 1.87869 1.67896 1.14077 1.60819 1.22665 0.97756 0.86384 0.94878 1.22139 1.01670 0.99672 0.93904 1.21806 0.95773 0.97475 0.99727 0.92606 0.92753 0.92681 0.91455 0.90870 0.91459 0.92406 0.92212 0.77581 0.89555 0.96841 0.92200 0.96493 0.92390 0.91241 0.91026 0.89563 0.93486 0.89420 0.93537 0.91525 0.89300 0.92570 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 37.16 0.36 -1.06 16 2 C -0.11 -1.32 4.75 -26.74 -0.13 -1.45 16 3 C -0.11 -1.36 2.72 -91.78 -0.25 -1.61 16 4 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 5 C -0.14 -1.32 8.84 37.16 0.33 -0.99 16 6 C 0.51 8.60 7.12 -10.99 -0.08 8.52 16 7 O -0.53 -11.58 15.58 5.56 0.09 -11.50 16 8 N -0.72 -11.20 4.97 -53.68 -0.27 -11.47 16 9 C 0.12 2.25 2.27 -67.81 -0.15 2.10 16 10 H 0.09 1.87 5.72 -51.92 -0.30 1.57 16 11 C 0.15 3.40 4.26 -3.71 -0.02 3.39 16 12 N -0.59 -14.36 2.35 -172.08 -0.40 -14.76 16 13 C -0.35 -9.75 9.49 -15.06 -0.14 -9.89 16 14 H 0.06 1.57 7.94 -52.48 -0.42 1.15 16 15 C -0.02 -0.52 4.69 -17.43 -0.08 -0.60 16 16 N -0.91 -27.69 12.41 55.49 0.69 -27.00 16 17 Si 1.06 26.21 29.98 -169.99 -5.10 21.11 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 C 0.16 3.20 5.24 -3.51 -0.02 3.18 16 22 C -0.07 -1.12 0.52 -154.16 -0.08 -1.20 16 23 C -0.14 -1.90 4.92 -26.63 -0.13 -2.03 16 24 C 0.06 0.77 6.57 37.22 0.24 1.01 16 25 O -0.39 -5.72 10.76 -35.23 -0.38 -6.10 16 26 C 0.06 0.87 6.57 37.22 0.24 1.12 16 27 C -0.14 -2.31 4.48 -26.63 -0.12 -2.43 16 28 C -0.11 -1.68 3.63 -26.73 -0.10 -1.77 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.44 6.57 -51.93 -0.34 0.10 16 32 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.07 1.07 7.95 -51.93 -0.41 0.66 16 34 H 0.07 0.51 6.56 -51.93 -0.34 0.17 16 35 H 0.06 0.47 7.56 -51.93 -0.39 0.07 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.39 4.71 8.02 -40.82 -0.33 4.38 16 38 H 0.09 2.42 6.30 -51.93 -0.33 2.09 16 39 H 0.01 0.32 7.86 -51.93 -0.41 -0.08 16 40 H 0.27 8.13 6.69 -40.82 -0.27 7.86 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.54 6.59 -51.93 -0.34 0.20 16 47 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.05 0.67 6.64 -51.93 -0.34 0.32 16 49 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.09 1.77 5.92 -51.92 -0.31 1.46 16 51 H 0.06 0.77 5.03 -51.93 -0.26 0.51 16 52 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -32.82 384.12 -8.77 -41.60 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -9.07 Total: 6.04 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.12 Total: -3.71 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.02 Total: -53.23 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.29 Total: -17.60 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -5.10 Total: 21.11 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.82 -8.77 -41.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099565519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.863 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds