Wall clock time and date at job start Tue Mar 31 2020 15:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47321 * 2 1 4 4 H 1.08997 * 109.47151 * 54.99590 * 3 2 1 5 5 C 1.53002 * 109.47061 * 295.00199 * 3 2 1 6 6 C 1.50699 * 109.47129 * 174.99991 * 3 2 1 7 7 O 1.21275 * 120.00457 * 359.97438 * 6 3 2 8 8 N 1.34778 * 119.99867 * 179.97438 * 6 3 2 9 9 C 1.46494 * 120.00296 * 179.97438 * 8 6 3 10 10 H 1.09007 * 109.52657 * 35.08692 * 9 8 6 11 11 C 1.53186 * 109.49922 * 275.00239 * 9 8 6 12 12 N 1.46931 * 108.81331 * 185.39238 * 11 9 8 13 13 C 1.36940 * 120.64059 * 233.63134 * 12 11 9 14 14 H 1.08005 * 120.00200 * 152.06464 * 13 12 11 15 15 C 1.38814 * 120.00029 * 332.06210 * 13 12 11 16 16 N 1.31625 * 119.99554 * 335.33918 * 15 13 12 17 17 Si 1.86789 * 120.00299 * 155.33770 * 15 13 12 18 18 H 1.48497 * 109.47443 * 179.97438 * 17 15 13 19 19 H 1.48504 * 109.47143 * 300.00022 * 17 15 13 20 20 H 1.48497 * 109.47296 * 59.99729 * 17 15 13 21 21 C 1.46949 * 118.72155 * 53.89718 * 12 11 9 22 22 C 1.53556 * 108.50981 * 306.18039 * 21 12 11 23 23 C 1.53072 * 109.45803 * 174.84757 * 22 21 12 24 24 C 1.53115 * 109.16710 * 176.84484 * 23 22 21 25 25 O 1.42904 * 109.41143 * 302.52877 * 24 23 22 26 26 C 1.42903 * 114.12689 * 61.18432 * 25 24 23 27 27 C 1.53090 * 109.62632 * 294.61220 * 22 21 12 28 28 C 1.52946 * 109.40984 * 54.76588 * 22 21 12 29 29 H 1.09007 * 109.47455 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47045 * 299.99920 * 1 2 3 31 31 H 1.08998 * 109.47314 * 60.00440 * 1 2 3 32 32 H 1.09007 * 109.47251 * 239.99613 * 2 1 3 33 33 H 1.09004 * 109.47153 * 120.00462 * 2 1 3 34 34 H 1.08993 * 109.47349 * 59.99415 * 5 3 2 35 35 H 1.09007 * 109.46954 * 180.02562 * 5 3 2 36 36 H 1.09007 * 109.46716 * 299.99769 * 5 3 2 37 37 H 0.97005 * 119.99967 * 359.97438 * 8 6 3 38 38 H 1.08994 * 109.58096 * 65.59721 * 11 9 8 39 39 H 1.08994 * 109.69228 * 305.25774 * 11 9 8 40 40 H 0.97002 * 120.00267 * 354.24201 * 16 15 13 41 41 H 1.09003 * 109.58544 * 66.00664 * 21 12 11 42 42 H 1.08998 * 109.59619 * 186.44379 * 21 12 11 43 43 H 1.09000 * 109.52338 * 296.75167 * 23 22 21 44 44 H 1.09003 * 109.52268 * 56.93911 * 23 22 21 45 45 H 1.09000 * 109.47984 * 182.54880 * 24 23 22 46 46 H 1.08993 * 109.48058 * 62.51026 * 24 23 22 47 47 H 1.09001 * 109.48629 * 178.82445 * 26 25 24 48 48 H 1.09005 * 109.47991 * 58.77617 * 26 25 24 49 49 H 1.08995 * 109.52362 * 303.14832 * 27 22 21 50 50 H 1.09009 * 109.52318 * 63.33480 * 27 22 21 51 51 H 1.08997 * 109.46334 * 178.60224 * 28 22 21 52 52 H 1.09004 * 109.46124 * 58.63399 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3073 6 6 3.5419 1.4442 0.1238 7 8 4.1450 0.3951 0.2046 8 7 4.2150 2.6117 0.1448 9 6 5.6749 2.6135 0.2657 10 1 6.0857 1.7561 -0.2675 11 6 6.0656 2.5310 1.7446 12 7 7.5245 2.6642 1.8575 13 6 8.2612 1.7251 2.5286 14 1 9.2915 1.5507 2.2555 15 6 7.6839 0.9972 3.5600 16 7 6.6566 1.4904 4.2187 17 14 8.3648 -0.6821 4.0131 18 1 7.5785 -1.2478 5.1387 19 1 8.2716 -1.5872 2.8395 20 1 9.7859 -0.5463 4.4217 21 6 8.1771 3.8278 1.2413 22 6 7.7620 3.8942 -0.2356 23 6 8.3259 5.1696 -0.8669 24 6 7.9752 5.1903 -2.3572 25 8 8.4951 4.0159 -2.9838 26 6 7.9644 2.7941 -2.4662 27 6 8.3151 2.6765 -0.9804 28 6 6.2358 3.9049 -0.3346 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5490 2.1251 -1.3970 35 1 1.9990 3.1540 -1.3075 36 1 2.0699 1.5874 -2.1492 37 1 3.7327 3.4508 0.0798 38 1 5.7541 1.5691 2.1516 39 1 5.5814 3.3357 2.2978 40 1 6.3554 2.3952 4.0408 41 1 7.8625 4.7370 1.7536 42 1 9.2594 3.7208 1.3138 43 1 7.8905 6.0412 -0.3781 44 1 9.4092 5.1870 -0.7473 45 1 8.4130 6.0740 -2.8214 46 1 6.8920 5.2162 -2.4754 47 1 8.3943 1.9522 -3.0090 48 1 6.8810 2.7890 -2.5856 49 1 9.3982 2.6390 -0.8636 50 1 7.8722 1.7678 -0.5725 51 1 5.9402 3.9771 -1.3812 52 1 5.8423 4.7610 0.2136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099565519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:58 Heat of formation + Delta-G solvation = -106.475985 kcal Electronic energy + Delta-G solvation = -30411.255129 eV Core-core repulsion = 26602.357917 eV Total energy + Delta-G solvation = -3808.897212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.76344 -40.70230 -38.61161 -36.42353 -36.01086 -35.48414 -32.75172 -32.08153 -31.60425 -29.99405 -28.51733 -27.28501 -26.23142 -24.63886 -24.55306 -23.91646 -22.59131 -21.63763 -20.91362 -19.52463 -19.25978 -17.99550 -17.49994 -16.99460 -16.76257 -16.60694 -16.31525 -15.96648 -15.77644 -15.50320 -15.40041 -15.24437 -15.15379 -14.85806 -14.41176 -14.16549 -14.01406 -13.58232 -13.31565 -13.15989 -13.00576 -12.94963 -12.85778 -12.64292 -12.57712 -12.50857 -12.24639 -12.21976 -12.02578 -11.98558 -11.89239 -11.72423 -11.61133 -11.56115 -11.17693 -11.04275 -10.67564 -10.57190 -10.30311 -10.14957 -8.92953 -8.27285 -5.43705 1.48008 1.58031 1.67999 1.74424 2.16758 2.59446 2.97605 3.18930 3.48072 3.60628 3.64738 3.77878 3.80518 3.90340 3.98208 4.08551 4.12267 4.19243 4.24175 4.29025 4.37683 4.42996 4.49081 4.52780 4.59919 4.67713 4.68496 4.73859 4.78296 4.81371 4.84824 4.90329 4.95766 5.01959 5.02692 5.08091 5.10285 5.13590 5.19073 5.20732 5.21980 5.35768 5.38210 5.46086 5.48598 5.56282 5.79951 6.27328 6.35404 6.60271 7.01437 7.33624 7.73375 8.16825 8.96325 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.007833 B = 0.006064 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3573.928922 B = 4616.068036 C = 7312.895828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C -0.103 4.103 4 H 0.112 0.888 5 C -0.136 4.136 6 C 0.503 3.497 7 O -0.591 6.591 8 N -0.711 5.711 9 C 0.137 3.863 10 H 0.057 0.943 11 C 0.160 3.840 12 N -0.607 5.607 13 C -0.349 4.349 14 H 0.049 0.951 15 C -0.072 4.072 16 N -0.940 5.940 17 Si 1.103 2.897 18 H -0.291 1.291 19 H -0.291 1.291 20 H -0.268 1.268 21 C 0.156 3.844 22 C -0.063 4.063 23 C -0.135 4.135 24 C 0.059 3.941 25 O -0.397 6.397 26 C 0.070 3.930 27 C -0.132 4.132 28 C -0.098 4.098 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.413 0.587 38 H 0.031 0.969 39 H 0.005 0.995 40 H 0.254 0.746 41 H 0.023 0.977 42 H 0.045 0.955 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.114 0.886 46 H 0.064 0.936 47 H 0.094 0.906 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.050 0.950 51 H 0.086 0.914 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.733 9.231 -15.325 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C -0.124 4.124 4 H 0.130 0.870 5 C -0.194 4.194 6 C 0.291 3.709 7 O -0.470 6.470 8 N -0.363 5.363 9 C 0.031 3.969 10 H 0.076 0.924 11 C 0.033 3.967 12 N -0.331 5.331 13 C -0.479 4.479 14 H 0.067 0.933 15 C -0.269 4.269 16 N -0.582 5.582 17 Si 0.928 3.072 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.193 1.193 21 C 0.031 3.969 22 C -0.065 4.065 23 C -0.173 4.173 24 C -0.017 4.017 25 O -0.316 6.316 26 C -0.007 4.007 27 C -0.170 4.170 28 C -0.136 4.136 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.250 0.750 38 H 0.049 0.951 39 H 0.023 0.977 40 H 0.064 0.936 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.085 0.915 45 H 0.132 0.868 46 H 0.082 0.918 47 H 0.112 0.888 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.105 0.895 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.352 7.178 -14.424 18.629 hybrid contribution 0.314 1.127 0.116 1.176 sum -9.038 8.305 -14.308 18.851 Atomic orbital electron populations 1.21790 0.92779 1.02491 1.03038 1.21328 0.97482 0.94334 1.01438 1.21406 0.88511 0.99675 1.02844 0.86994 1.21818 1.03661 1.00394 0.93477 1.21595 0.91723 0.83128 0.74452 1.90717 1.71716 1.33505 1.51099 1.45943 1.07074 1.09089 1.74176 1.21354 0.79820 0.99180 0.96577 0.92445 1.21004 0.84258 0.97762 0.93707 1.44151 1.02311 1.23967 1.62655 1.20101 0.97568 1.17088 1.13155 0.93346 1.26974 0.99103 1.07742 0.93056 1.70893 1.30300 1.17258 1.39706 0.83019 0.75756 0.72763 0.75643 1.21703 1.21789 1.19314 1.21198 0.95855 0.88440 0.91391 1.20940 0.94623 0.95630 0.95321 1.22136 1.01599 0.96765 0.96815 1.22786 0.99216 0.88030 0.91674 1.87876 1.68340 1.14479 1.60923 1.22530 0.98207 0.87181 0.92757 1.22036 1.00500 0.98464 0.96011 1.21752 0.94685 0.95750 1.01422 0.92301 0.91997 0.90446 0.92651 0.94376 0.88803 0.90575 0.92993 0.74986 0.95084 0.97691 0.93646 0.95918 0.93669 0.89028 0.91501 0.86794 0.91798 0.88789 0.92736 0.92834 0.93131 0.89519 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.67 71.98 0.70 -1.71 16 2 C -0.11 -2.69 4.75 30.59 0.15 -2.54 16 3 C -0.10 -2.38 2.72 -11.54 -0.03 -2.41 16 4 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 5 C -0.14 -2.05 8.84 71.98 0.64 -1.42 16 6 C 0.50 17.19 7.12 87.66 0.62 17.81 16 7 O -0.59 -27.47 15.58 -3.01 -0.05 -27.52 16 8 N -0.71 -21.50 4.97 -442.15 -2.20 -23.70 16 9 C 0.14 5.12 2.27 45.08 0.10 5.23 16 10 H 0.06 2.56 5.72 -2.38 -0.01 2.54 16 11 C 0.16 7.79 4.26 86.36 0.37 8.16 16 12 N -0.61 -30.78 2.35 -698.33 -1.64 -32.42 16 13 C -0.35 -20.31 9.49 84.03 0.80 -19.52 16 14 H 0.05 2.83 7.94 -2.91 -0.02 2.81 16 15 C -0.07 -4.32 4.69 84.86 0.40 -3.92 16 16 N -0.94 -59.98 12.41 21.65 0.27 -59.71 16 17 Si 1.10 55.12 29.98 68.60 2.06 57.18 16 18 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 19 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 C 0.16 6.34 5.24 86.48 0.45 6.79 16 22 C -0.06 -1.95 0.52 -51.96 -0.03 -1.98 16 23 C -0.13 -3.14 4.92 30.66 0.15 -2.99 16 24 C 0.06 1.18 6.57 72.02 0.47 1.66 16 25 O -0.40 -10.41 10.76 -148.98 -1.60 -12.02 16 26 C 0.07 1.92 6.57 72.02 0.47 2.40 16 27 C -0.13 -4.49 4.48 30.66 0.14 -4.35 16 28 C -0.10 -2.77 3.63 30.60 0.11 -2.66 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.08 0.97 6.57 -2.39 -0.02 0.95 16 32 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.04 1.19 7.95 -2.39 -0.02 1.17 16 34 H 0.09 0.97 6.56 -2.39 -0.02 0.96 16 35 H 0.08 0.89 7.56 -2.38 -0.02 0.87 16 36 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.41 8.83 8.02 -92.70 -0.74 8.08 16 38 H 0.03 1.85 6.30 -2.39 -0.02 1.83 16 39 H 0.01 0.26 7.86 -2.39 -0.02 0.24 16 40 H 0.25 16.32 6.69 -92.71 -0.62 15.70 16 41 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 42 H 0.04 1.91 7.93 -2.39 -0.02 1.89 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 1.11 6.59 -2.39 -0.02 1.09 16 47 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 48 H 0.05 1.42 6.64 -2.38 -0.02 1.41 16 49 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.05 2.11 5.92 -2.38 -0.01 2.10 16 51 H 0.09 2.00 5.03 -2.39 -0.01 1.99 16 52 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -79.06 384.12 2.65 -76.40 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.31 Total: 23.24 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 5.51 Total: -1.45 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -3.57 Total: -115.83 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.65 Total: -39.54 kcal Atomic # 14 Polarization: 55.12 SS G_CDS: 2.06 Total: 57.18 kcal Total: -79.06 2.65 -76.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099565519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.072 kcal (2) G-P(sol) polarization free energy of solvation -79.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds