Wall clock time and date at job start Tue Mar 31 2020 14:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46849 * 2 1 4 4 H 1.09004 * 110.43384 * 58.24902 * 3 2 1 5 5 C 1.54802 * 110.49063 * 295.69753 * 3 2 1 6 6 C 1.55004 * 102.09504 * 220.44373 * 5 3 2 7 7 O 1.44382 * 103.48738 * 37.02418 * 6 5 3 8 8 C 1.43743 * 106.97424 * 319.94024 * 7 6 5 9 9 H 1.09004 * 109.88059 * 267.08943 * 8 7 6 10 10 C 1.50700 * 109.87803 * 145.94430 * 8 7 6 11 11 O 1.21280 * 119.99914 * 343.66295 * 10 8 7 12 12 N 1.34775 * 120.00064 * 163.67241 * 10 8 7 13 13 C 1.48113 * 127.03708 * 4.46267 * 12 10 8 14 14 C 1.54590 * 103.42269 * 219.28847 * 13 12 10 15 15 H 1.09005 * 110.58279 * 81.16899 * 14 13 12 16 16 C 1.53006 * 110.99080 * 204.36950 * 14 13 12 17 17 C 1.54612 * 102.91345 * 322.86163 * 14 13 12 18 18 H 1.09000 * 110.41891 * 262.76437 * 17 14 13 19 19 C 1.53004 * 110.33055 * 140.59183 * 17 14 13 20 20 C 1.52998 * 109.47505 * 177.93000 * 19 17 14 21 21 N 1.46492 * 109.47231 * 179.97438 * 20 19 17 22 22 C 1.36935 * 120.00202 * 179.97438 * 21 20 19 23 23 H 1.08006 * 120.00026 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00336 * 180.02562 * 22 21 20 25 25 N 1.31612 * 119.99945 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99974 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47265 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47216 * 119.99979 * 26 24 22 29 29 H 1.48498 * 109.47178 * 239.99890 * 26 24 22 30 30 C 1.47489 * 127.02981 * 184.77392 * 12 10 8 31 31 H 1.08996 * 109.47631 * 59.99777 * 1 2 3 32 32 H 1.09002 * 109.47099 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47193 * 299.99464 * 1 2 3 34 34 H 1.09002 * 109.47193 * 240.00536 * 2 1 3 35 35 H 1.08996 * 109.47631 * 120.00223 * 2 1 3 36 36 H 1.09003 * 110.90844 * 102.24643 * 5 3 2 37 37 H 1.09001 * 110.94075 * 338.65718 * 5 3 2 38 38 H 1.08998 * 110.61506 * 278.52454 * 6 5 3 39 39 H 1.08993 * 110.75342 * 155.59058 * 6 5 3 40 40 H 1.09008 * 110.66106 * 337.76512 * 13 12 10 41 41 H 1.09001 * 110.66655 * 100.88074 * 13 12 10 42 42 H 1.08996 * 109.47624 * 173.65094 * 16 14 13 43 43 H 1.09005 * 109.46690 * 293.65413 * 16 14 13 44 44 H 1.09003 * 109.47047 * 53.64486 * 16 14 13 45 45 H 1.09003 * 109.46540 * 297.92882 * 19 17 14 46 46 H 1.08997 * 109.46909 * 57.92544 * 19 17 14 47 47 H 1.09001 * 109.46790 * 299.99937 * 20 19 17 48 48 H 1.09001 * 109.46966 * 59.99635 * 20 19 17 49 49 H 0.96997 * 119.99965 * 359.97438 * 21 20 19 50 50 H 0.97000 * 120.00272 * 179.97438 * 25 24 22 51 51 H 1.09001 * 109.91451 * 273.87679 * 30 12 10 52 52 H 1.08993 * 109.91613 * 34.96801 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6599 1.9805 0.8686 5 6 1.6276 2.1630 -1.3067 6 6 2.9016 2.9792 -1.6433 7 8 3.9780 2.0997 -1.2529 8 6 3.5805 1.4700 -0.0234 9 1 3.9539 2.0440 0.8246 10 6 4.1190 0.0635 0.0294 11 8 4.5164 -0.4721 -0.9836 12 7 4.1589 -0.5992 1.2023 13 6 3.6346 -0.1352 2.5075 14 6 4.7036 -0.6162 3.5152 15 1 5.5475 0.0734 3.5370 16 6 4.1044 -0.7801 4.9134 17 6 5.1305 -1.9858 2.9386 18 1 4.5976 -2.7929 3.4414 19 6 6.6416 -2.1763 3.0843 20 6 7.0351 -3.5570 2.5554 21 7 8.4820 -3.7391 2.6945 22 6 9.0675 -4.9073 2.2853 23 1 8.4626 -5.6944 1.8597 24 6 10.4385 -5.0801 2.4175 25 7 11.1757 -4.1208 2.9357 26 14 11.2373 -6.6736 1.8587 27 1 10.1978 -7.5844 1.3154 28 1 12.2403 -6.3810 0.8035 29 1 11.9086 -7.3223 3.0135 30 6 4.7392 -1.9323 1.4500 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 0.7770 2.8227 -1.1354 37 1 1.4069 1.4436 -2.0952 38 1 2.9305 3.9019 -1.0637 39 1 2.9508 3.1959 -2.7103 40 1 3.5526 0.9517 2.5245 41 1 2.6712 -0.5979 2.7216 42 1 4.8459 -1.2254 5.5767 43 1 3.8111 0.1961 5.2997 44 1 3.2291 -1.4275 4.8600 45 1 7.1615 -1.4068 2.5135 46 1 6.9180 -2.0976 4.1358 47 1 6.5152 -4.3264 3.1263 48 1 6.7587 -3.6356 1.5040 49 1 9.0253 -3.0321 3.0763 50 1 12.1337 -4.2416 3.0284 51 1 4.0016 -2.7047 1.2320 52 1 5.6214 -2.0750 0.8260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104312712.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:45 Heat of formation + Delta-G solvation = -79.089027 kcal Electronic energy + Delta-G solvation = -28930.804943 eV Core-core repulsion = 25123.095319 eV Total energy + Delta-G solvation = -3807.709624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.05723 -39.39253 -37.63386 -35.32380 -34.91821 -33.18633 -32.08651 -30.77026 -30.36998 -29.58951 -26.96578 -26.54383 -24.65015 -23.81988 -23.07644 -22.50754 -21.28252 -20.62262 -19.88119 -19.10771 -17.45063 -17.01158 -16.93411 -16.60263 -15.83909 -15.26105 -14.93909 -14.84331 -14.59803 -14.45405 -14.16236 -13.89978 -13.64084 -13.42182 -13.25844 -13.05185 -12.83263 -12.82179 -12.51469 -12.43832 -12.17314 -11.91977 -11.86463 -11.66592 -11.47790 -11.38483 -11.16232 -11.07558 -11.00244 -10.88075 -10.82339 -10.52623 -10.41049 -10.30737 -10.26701 -9.90676 -9.62339 -9.54259 -8.82189 -8.73433 -6.86361 -5.71569 -2.99852 2.45996 2.70086 3.47349 3.52806 3.55238 3.67955 3.97002 4.14789 4.25839 4.36006 4.50463 4.58715 4.69461 4.72671 4.78856 4.79849 4.95714 4.98790 5.03836 5.11452 5.18213 5.21964 5.23650 5.33755 5.34403 5.41655 5.45222 5.50822 5.53858 5.61791 5.63835 5.69474 5.73282 5.80591 5.80981 5.90987 5.94988 5.99251 6.01502 6.06552 6.16812 6.32228 6.40917 6.46059 6.50891 6.89264 6.94134 7.43936 7.75556 8.12142 8.47650 9.58577 10.17335 10.51630 11.51659 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.002633 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.556281 B =10631.493254 C =11329.626160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C -0.108 4.108 4 H 0.092 0.908 5 C -0.148 4.148 6 C 0.044 3.956 7 O -0.347 6.347 8 C 0.066 3.934 9 H 0.090 0.910 10 C 0.538 3.462 11 O -0.518 6.518 12 N -0.620 5.620 13 C 0.101 3.899 14 C -0.104 4.104 15 H 0.085 0.915 16 C -0.140 4.140 17 C -0.090 4.090 18 H 0.087 0.913 19 C -0.117 4.117 20 C 0.151 3.849 21 N -0.734 5.734 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.292 1.292 30 C 0.109 3.891 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.017 0.983 48 H 0.019 0.981 49 H 0.383 0.617 50 H 0.254 0.746 51 H 0.065 0.935 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.281 16.466 -0.359 31.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.127 4.127 4 H 0.110 0.890 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.265 6.265 8 C 0.005 3.995 9 H 0.107 0.893 10 C 0.325 3.675 11 O -0.392 6.392 12 N -0.356 5.356 13 C -0.022 4.022 14 C -0.123 4.123 15 H 0.104 0.896 16 C -0.198 4.198 17 C -0.110 4.110 18 H 0.105 0.895 19 C -0.155 4.155 20 C 0.024 3.976 21 N -0.378 5.378 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.212 4.212 25 N -0.584 5.584 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.013 4.013 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.035 0.965 48 H 0.037 0.963 49 H 0.216 0.784 50 H 0.064 0.936 51 H 0.083 0.917 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.847 16.019 -1.234 30.433 hybrid contribution 0.574 -0.548 0.023 0.794 sum -25.272 15.471 -1.211 29.657 Atomic orbital electron populations 1.21741 0.95081 1.01922 1.01745 1.21879 0.96633 0.94831 1.03722 1.22539 0.92566 0.98127 0.99490 0.88977 1.23241 0.98527 0.99547 0.97271 1.23634 0.85393 0.92876 1.01379 1.89024 1.39922 1.58635 1.38899 1.22696 0.94857 0.92174 0.89819 0.89280 1.19836 0.78497 0.87000 0.82124 1.90753 1.46946 1.68543 1.32959 1.48766 1.59231 1.19691 1.07962 1.22638 0.97315 0.99768 0.82460 1.22309 0.98022 0.97491 0.94482 0.89623 1.21733 1.01047 1.01651 0.95370 1.22149 0.97772 0.97035 0.94045 0.89481 1.21796 0.92754 0.99170 1.01789 1.20700 0.86808 0.92972 0.97151 1.42368 1.01491 1.18478 1.75459 1.19292 0.90825 0.93537 1.33162 0.91154 1.24746 0.96310 0.98119 1.02001 1.69669 1.05240 1.32540 1.50903 0.86112 0.79298 0.82975 0.77822 1.20541 1.21857 1.21901 1.22236 0.99139 0.83188 0.96743 0.92622 0.92502 0.92685 0.91054 0.90520 0.89823 0.89943 0.91880 0.88487 0.90530 0.90589 0.91681 0.92582 0.92412 0.91841 0.91510 0.96469 0.96315 0.78357 0.93611 0.91673 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.74 37.15 0.36 -0.57 16 2 C -0.13 -1.12 4.12 -26.73 -0.11 -1.23 16 3 C -0.11 -0.82 3.01 -89.09 -0.27 -1.09 16 4 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 5 C -0.15 -1.01 5.76 -24.72 -0.14 -1.16 16 6 C 0.04 0.35 7.72 38.22 0.30 0.65 16 7 O -0.35 -4.51 10.79 -54.24 -0.59 -5.10 16 8 C 0.07 0.72 3.10 -27.31 -0.08 0.63 16 9 H 0.09 0.80 7.22 -51.93 -0.37 0.42 16 10 C 0.54 7.65 5.10 -10.99 -0.06 7.60 16 11 O -0.52 -9.93 16.89 -13.45 -0.23 -10.16 16 12 N -0.62 -7.44 2.55 -169.98 -0.43 -7.88 16 13 C 0.10 0.83 5.28 -2.32 -0.01 0.82 16 14 C -0.10 -0.96 3.18 -88.93 -0.28 -1.24 16 15 H 0.09 0.87 7.87 -51.93 -0.41 0.46 16 16 C -0.14 -1.04 9.17 37.16 0.34 -0.70 16 17 C -0.09 -1.08 2.61 -89.24 -0.23 -1.31 16 18 H 0.09 0.96 7.86 -51.93 -0.41 0.56 16 19 C -0.12 -1.86 4.53 -26.73 -0.12 -1.99 16 20 C 0.15 3.10 6.08 -4.05 -0.02 3.08 16 21 N -0.73 -19.36 5.60 -59.91 -0.34 -19.69 16 22 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 23 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 24 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 25 N -0.93 -29.13 13.06 55.49 0.72 -28.40 16 26 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 30 C 0.11 1.46 6.14 -2.97 -0.02 1.44 16 31 H 0.05 0.33 7.35 -51.93 -0.38 -0.05 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.81 7.49 -51.93 -0.39 0.42 16 35 H 0.08 0.66 4.74 -51.93 -0.25 0.41 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.64 7.78 -51.93 -0.40 0.24 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.49 6.78 -51.92 -0.35 0.14 16 41 H 0.08 0.51 7.19 -51.93 -0.37 0.14 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.39 8.11 -51.93 -0.42 -0.04 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.02 0.40 6.88 -51.93 -0.36 0.04 16 49 H 0.38 10.57 7.67 -40.82 -0.31 10.26 16 50 H 0.25 7.61 8.31 -40.82 -0.34 7.28 16 51 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.09 1.45 6.69 -51.93 -0.35 1.10 16 LS Contribution 398.22 15.07 6.00 6.00 Total: -1.00 -35.86 398.22 -9.87 -45.73 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -9.39 Total: 4.11 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.60 Total: -2.71 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.04 Total: -55.97 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.81 Total: -15.25 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.86 -9.87 -45.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104312712.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.358 kcal (2) G-P(sol) polarization free energy of solvation -35.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds