Wall clock time and date at job start Tue Mar 31 2020 14:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46849 * 2 1 4 4 H 1.09004 * 110.43384 * 58.24902 * 3 2 1 5 5 C 1.54802 * 110.49063 * 295.69753 * 3 2 1 6 6 C 1.55004 * 102.09504 * 220.44373 * 5 3 2 7 7 O 1.44382 * 103.48738 * 37.02418 * 6 5 3 8 8 C 1.43743 * 106.97424 * 319.94024 * 7 6 5 9 9 H 1.09004 * 109.88059 * 267.08943 * 8 7 6 10 10 C 1.50700 * 109.87803 * 145.94430 * 8 7 6 11 11 O 1.21280 * 119.99914 * 343.66295 * 10 8 7 12 12 N 1.34775 * 120.00064 * 163.67241 * 10 8 7 13 13 C 1.48113 * 127.03708 * 4.46267 * 12 10 8 14 14 C 1.54590 * 103.42269 * 219.28847 * 13 12 10 15 15 H 1.09005 * 110.58279 * 81.16899 * 14 13 12 16 16 C 1.53006 * 110.99080 * 204.36950 * 14 13 12 17 17 C 1.54612 * 102.91345 * 322.86163 * 14 13 12 18 18 H 1.09000 * 110.41891 * 262.76437 * 17 14 13 19 19 C 1.53004 * 110.33055 * 140.59183 * 17 14 13 20 20 C 1.52998 * 109.47505 * 177.93000 * 19 17 14 21 21 N 1.46492 * 109.47231 * 179.97438 * 20 19 17 22 22 C 1.36935 * 120.00202 * 179.97438 * 21 20 19 23 23 H 1.08006 * 120.00026 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00336 * 180.02562 * 22 21 20 25 25 N 1.31612 * 119.99945 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99974 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47265 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47216 * 119.99979 * 26 24 22 29 29 H 1.48498 * 109.47178 * 239.99890 * 26 24 22 30 30 C 1.47489 * 127.02981 * 184.77392 * 12 10 8 31 31 H 1.08996 * 109.47631 * 59.99777 * 1 2 3 32 32 H 1.09002 * 109.47099 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47193 * 299.99464 * 1 2 3 34 34 H 1.09002 * 109.47193 * 240.00536 * 2 1 3 35 35 H 1.08996 * 109.47631 * 120.00223 * 2 1 3 36 36 H 1.09003 * 110.90844 * 102.24643 * 5 3 2 37 37 H 1.09001 * 110.94075 * 338.65718 * 5 3 2 38 38 H 1.08998 * 110.61506 * 278.52454 * 6 5 3 39 39 H 1.08993 * 110.75342 * 155.59058 * 6 5 3 40 40 H 1.09008 * 110.66106 * 337.76512 * 13 12 10 41 41 H 1.09001 * 110.66655 * 100.88074 * 13 12 10 42 42 H 1.08996 * 109.47624 * 173.65094 * 16 14 13 43 43 H 1.09005 * 109.46690 * 293.65413 * 16 14 13 44 44 H 1.09003 * 109.47047 * 53.64486 * 16 14 13 45 45 H 1.09003 * 109.46540 * 297.92882 * 19 17 14 46 46 H 1.08997 * 109.46909 * 57.92544 * 19 17 14 47 47 H 1.09001 * 109.46790 * 299.99937 * 20 19 17 48 48 H 1.09001 * 109.46966 * 59.99635 * 20 19 17 49 49 H 0.96997 * 119.99965 * 359.97438 * 21 20 19 50 50 H 0.97000 * 120.00272 * 179.97438 * 25 24 22 51 51 H 1.09001 * 109.91451 * 273.87679 * 30 12 10 52 52 H 1.08993 * 109.91613 * 34.96801 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6599 1.9805 0.8686 5 6 1.6276 2.1630 -1.3067 6 6 2.9016 2.9792 -1.6433 7 8 3.9780 2.0997 -1.2529 8 6 3.5805 1.4700 -0.0234 9 1 3.9539 2.0440 0.8246 10 6 4.1190 0.0635 0.0294 11 8 4.5164 -0.4721 -0.9836 12 7 4.1589 -0.5992 1.2023 13 6 3.6346 -0.1352 2.5075 14 6 4.7036 -0.6162 3.5152 15 1 5.5475 0.0734 3.5370 16 6 4.1044 -0.7801 4.9134 17 6 5.1305 -1.9858 2.9386 18 1 4.5976 -2.7929 3.4414 19 6 6.6416 -2.1763 3.0843 20 6 7.0351 -3.5570 2.5554 21 7 8.4820 -3.7391 2.6945 22 6 9.0675 -4.9073 2.2853 23 1 8.4626 -5.6944 1.8597 24 6 10.4385 -5.0801 2.4175 25 7 11.1757 -4.1208 2.9357 26 14 11.2373 -6.6736 1.8587 27 1 10.1978 -7.5844 1.3154 28 1 12.2403 -6.3810 0.8035 29 1 11.9086 -7.3223 3.0135 30 6 4.7392 -1.9323 1.4500 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 0.7770 2.8227 -1.1354 37 1 1.4069 1.4436 -2.0952 38 1 2.9305 3.9019 -1.0637 39 1 2.9508 3.1959 -2.7103 40 1 3.5526 0.9517 2.5245 41 1 2.6712 -0.5979 2.7216 42 1 4.8459 -1.2254 5.5767 43 1 3.8111 0.1961 5.2997 44 1 3.2291 -1.4275 4.8600 45 1 7.1615 -1.4068 2.5135 46 1 6.9180 -2.0976 4.1358 47 1 6.5152 -4.3264 3.1263 48 1 6.7587 -3.6356 1.5040 49 1 9.0253 -3.0321 3.0763 50 1 12.1337 -4.2416 3.0284 51 1 4.0016 -2.7047 1.2320 52 1 5.6214 -2.0750 0.8260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104312712.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:44 Heat of formation + Delta-G solvation = -102.317539 kcal Electronic energy + Delta-G solvation = -28931.812207 eV Core-core repulsion = 25123.095319 eV Total energy + Delta-G solvation = -3808.716888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.94121 -40.25936 -38.73562 -36.91667 -35.84125 -34.54223 -33.46711 -31.94012 -31.27151 -30.60535 -28.34448 -27.25509 -26.10616 -24.78316 -24.09031 -23.67422 -22.25534 -21.66773 -20.87676 -20.01652 -19.18559 -18.26823 -17.76458 -17.49032 -16.83185 -16.63310 -16.08272 -15.77996 -15.62728 -15.54070 -15.39478 -15.20546 -14.88626 -14.61000 -14.31264 -14.27139 -13.78495 -13.53589 -13.47510 -13.25385 -13.07060 -13.04503 -12.89441 -12.73324 -12.61426 -12.46325 -12.32578 -12.20529 -12.09612 -12.08237 -11.92515 -11.67568 -11.63467 -11.56580 -11.40004 -11.25166 -11.11842 -10.96853 -10.51001 -9.75966 -9.04497 -7.99543 -5.28960 1.43542 1.45155 1.45515 1.55564 1.75930 2.52554 2.97132 3.26373 3.33933 3.40999 3.54508 3.63840 3.65803 3.70065 3.96588 4.11618 4.13145 4.24099 4.26731 4.30602 4.36562 4.40689 4.43939 4.48446 4.51175 4.58933 4.66768 4.70024 4.75113 4.76308 4.79796 4.82189 4.88634 4.95636 4.97422 4.98809 5.10643 5.15497 5.16841 5.23078 5.26022 5.29576 5.35041 5.40439 5.42657 5.45680 5.58914 5.80427 6.23459 6.47910 7.07904 7.28821 8.04906 8.28040 9.24508 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.002633 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.556281 B =10631.493254 C =11329.626160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C -0.100 4.100 4 H 0.134 0.866 5 C -0.143 4.143 6 C 0.036 3.964 7 O -0.393 6.393 8 C 0.065 3.935 9 H 0.115 0.885 10 C 0.528 3.472 11 O -0.586 6.586 12 N -0.617 5.617 13 C 0.101 3.899 14 C -0.097 4.097 15 H 0.075 0.925 16 C -0.135 4.135 17 C -0.080 4.080 18 H 0.105 0.895 19 C -0.102 4.102 20 C 0.150 3.850 21 N -0.749 5.749 22 C -0.249 4.249 23 H 0.074 0.926 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.976 3.024 27 H -0.267 1.267 28 H -0.293 1.293 29 H -0.287 1.287 30 C 0.108 3.892 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.027 0.973 48 H 0.008 0.992 49 H 0.373 0.627 50 H 0.252 0.748 51 H 0.071 0.929 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.410 17.839 1.566 34.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C -0.119 4.119 4 H 0.151 0.849 5 C -0.180 4.180 6 C -0.040 4.040 7 O -0.312 6.312 8 C 0.004 3.996 9 H 0.132 0.868 10 C 0.318 3.682 11 O -0.466 6.466 12 N -0.351 5.351 13 C -0.020 4.020 14 C -0.116 4.116 15 H 0.094 0.906 16 C -0.193 4.193 17 C -0.100 4.100 18 H 0.123 0.877 19 C -0.140 4.140 20 C 0.023 3.977 21 N -0.392 5.392 22 C -0.380 4.380 23 H 0.092 0.908 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.804 3.196 27 H -0.191 1.191 28 H -0.220 1.220 29 H -0.214 1.214 30 C -0.015 4.015 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.136 0.864 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.090 0.910 47 H 0.045 0.955 48 H 0.026 0.974 49 H 0.205 0.795 50 H 0.061 0.939 51 H 0.090 0.910 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -29.039 17.401 0.729 33.862 hybrid contribution 1.533 -0.977 -0.614 1.919 sum -27.507 16.424 0.115 32.037 Atomic orbital electron populations 1.21709 0.93133 1.02030 1.03059 1.21818 0.98222 0.95181 1.01577 1.22644 0.89914 0.97891 1.01455 0.84854 1.23245 0.99037 0.99410 0.96353 1.23915 0.84757 0.93289 1.02041 1.88982 1.42367 1.59770 1.40092 1.22909 0.97083 0.89604 0.89962 0.86793 1.20707 0.77483 0.88374 0.81625 1.90706 1.50144 1.70263 1.35467 1.48851 1.58308 1.18926 1.09019 1.22965 0.97698 1.01881 0.79464 1.22281 0.98269 0.95006 0.96071 0.90621 1.21711 1.01047 1.03195 0.93313 1.22083 0.94704 0.99878 0.93297 0.87661 1.21637 0.95633 0.95572 1.01201 1.20881 0.83906 0.96027 0.96854 1.42621 1.03726 1.17536 1.75283 1.19690 0.91391 0.94409 1.32551 0.90846 1.25627 0.96941 1.01679 1.02707 1.69823 1.05278 1.34603 1.52395 0.85037 0.78224 0.79096 0.77199 1.19093 1.22038 1.21407 1.22128 0.97706 0.84699 0.97008 0.92245 0.93112 0.90326 0.95332 0.90644 0.86361 0.91844 0.89251 0.88449 0.87566 0.87839 0.92778 0.90425 0.91007 0.93851 0.90956 0.95516 0.97381 0.79544 0.93878 0.91046 0.94083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.74 71.98 0.70 -0.72 16 2 C -0.13 -2.01 4.12 30.59 0.13 -1.88 16 3 C -0.10 -1.23 3.01 -9.80 -0.03 -1.26 16 4 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 5 C -0.14 -1.62 5.76 31.89 0.18 -1.44 16 6 C 0.04 0.52 7.72 72.67 0.56 1.08 16 7 O -0.39 -10.30 10.79 -130.81 -1.41 -11.71 16 8 C 0.07 1.34 3.10 30.22 0.09 1.43 16 9 H 0.11 1.70 7.22 -2.38 -0.02 1.69 16 10 C 0.53 15.51 5.10 87.66 0.45 15.96 16 11 O -0.59 -24.47 16.89 15.14 0.26 -24.22 16 12 N -0.62 -14.60 2.55 -810.08 -2.06 -16.67 16 13 C 0.10 1.31 5.28 86.61 0.46 1.77 16 14 C -0.10 -1.55 3.18 -9.70 -0.03 -1.58 16 15 H 0.08 1.40 7.87 -2.38 -0.02 1.38 16 16 C -0.14 -1.48 9.17 71.98 0.66 -0.82 16 17 C -0.08 -1.85 2.61 -9.90 -0.03 -1.87 16 18 H 0.11 2.10 7.86 -2.39 -0.02 2.08 16 19 C -0.10 -3.33 4.53 30.60 0.14 -3.19 16 20 C 0.15 6.33 6.08 86.38 0.53 6.85 16 21 N -0.75 -40.78 5.60 -343.46 -1.92 -42.70 16 22 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16 23 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 24 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 25 N -0.97 -61.82 13.06 21.65 0.28 -61.54 16 26 Si 0.98 48.14 29.55 68.60 2.03 50.17 16 27 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 28 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 29 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 30 C 0.11 2.98 6.14 86.53 0.53 3.51 16 31 H 0.06 0.55 7.35 -2.39 -0.02 0.54 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.03 0.68 7.49 -2.39 -0.02 0.66 16 35 H 0.08 1.14 4.74 -2.39 -0.01 1.13 16 36 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.96 7.78 -2.39 -0.02 0.94 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.11 0.83 6.78 -2.38 -0.02 0.82 16 41 H 0.10 0.88 7.19 -2.39 -0.02 0.87 16 42 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.07 0.62 8.11 -2.39 -0.02 0.60 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.01 0.37 6.88 -2.39 -0.02 0.35 16 49 H 0.37 21.40 7.67 -92.71 -0.71 20.69 16 50 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 51 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 52 H 0.04 1.51 6.69 -2.39 -0.02 1.49 16 Total: -1.00 -84.27 398.22 2.99 -81.28 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.18 Total: 25.66 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.64 Total: -0.27 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -3.70 Total: -120.91 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -1.16 Total: -35.93 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -84.27 2.99 -81.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104312712.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.035 kcal (2) G-P(sol) polarization free energy of solvation -84.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds