Wall clock time and date at job start Tue Mar 31 2020 14:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46808 * 2 1 4 4 H 1.09001 * 109.47446 * 55.00527 * 3 2 1 5 5 C 1.53000 * 109.47543 * 294.99877 * 3 2 1 6 6 C 1.53006 * 109.46941 * 175.00345 * 3 2 1 7 7 C 1.50702 * 109.47192 * 185.00062 * 6 3 2 8 8 O 1.21284 * 119.99706 * 359.97438 * 7 6 3 9 9 N 1.34772 * 119.99904 * 179.97438 * 7 6 3 10 10 C 1.46932 * 120.62931 * 180.02562 * 9 7 6 11 11 C 1.53194 * 108.77260 * 233.62952 * 10 9 7 12 12 C 1.53040 * 109.31086 * 305.36302 * 11 10 9 13 13 O 1.42900 * 109.45623 * 181.38573 * 12 11 10 14 14 C 1.42906 * 113.99862 * 149.97332 * 13 12 11 15 15 C 1.53495 * 114.20623 * 149.99957 * 14 13 12 16 16 N 1.47066 * 87.98658 * 87.51851 * 15 14 13 17 17 C 1.36937 * 136.06113 * 206.85859 * 16 15 14 18 18 H 1.07995 * 120.00001 * 0.02562 * 17 16 15 19 19 C 1.38817 * 120.00320 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99557 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99975 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47441 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47001 * 120.00359 * 21 19 17 24 24 H 1.48499 * 109.47209 * 240.00202 * 21 19 17 25 25 C 1.47067 * 87.88528 * 27.11900 * 16 15 14 26 26 C 1.53039 * 109.52686 * 61.37655 * 12 11 10 27 27 C 1.46925 * 120.63399 * 0.02562 * 9 7 6 28 28 H 1.08996 * 109.46856 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46789 * 300.00019 * 1 2 3 30 30 H 1.08999 * 109.46922 * 59.99611 * 1 2 3 31 31 H 1.09003 * 109.46945 * 240.00667 * 2 1 3 32 32 H 1.08994 * 109.47160 * 119.99949 * 2 1 3 33 33 H 1.08996 * 109.47450 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.47280 * 300.00751 * 5 3 2 35 35 H 1.09006 * 109.46764 * 60.00253 * 5 3 2 36 36 H 1.08995 * 109.47286 * 64.99844 * 6 3 2 37 37 H 1.09004 * 109.46796 * 304.99969 * 6 3 2 38 38 H 1.09000 * 109.58484 * 113.84244 * 10 9 7 39 39 H 1.09000 * 109.58294 * 353.41551 * 10 9 7 40 40 H 1.08997 * 109.49422 * 185.41194 * 11 10 9 41 41 H 1.09000 * 109.52216 * 65.33283 * 11 10 9 42 42 H 1.08994 * 109.46090 * 301.35949 * 12 11 10 43 43 H 1.08994 * 113.27987 * 16.93304 * 14 13 12 44 44 H 1.09005 * 113.46950 * 332.74417 * 15 14 13 45 45 H 1.08994 * 113.52293 * 202.30901 * 15 14 13 46 46 H 0.96999 * 119.99537 * 179.97438 * 20 19 17 47 47 H 1.09007 * 113.46858 * 87.65629 * 25 16 15 48 48 H 1.08993 * 113.47208 * 218.09965 * 25 16 15 49 49 H 1.09001 * 109.50197 * 58.57594 * 26 12 11 50 50 H 1.09001 * 109.49527 * 178.67347 * 26 12 11 51 51 H 1.09001 * 109.58822 * 246.16215 * 27 9 7 52 52 H 1.09006 * 109.58346 * 6.43724 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 1.6353 2.1267 -1.3073 6 6 3.5649 1.4444 0.1256 7 6 4.0570 2.8634 0.2492 8 8 3.2660 3.7828 0.2374 9 7 5.3761 3.1108 0.3728 10 6 5.8711 4.4889 0.4947 11 6 6.9399 4.7254 -0.5769 12 6 8.0260 3.6543 -0.4536 13 8 9.0411 3.8909 -1.4311 14 6 10.3436 3.4580 -1.0330 15 6 11.2446 3.0213 -2.1964 16 7 11.6647 4.4244 -2.3294 17 6 12.1312 5.2225 -3.3397 18 1 12.2603 4.8171 -4.3323 19 6 12.4371 6.5530 -3.0882 20 7 12.2793 7.0472 -1.8786 21 14 13.0728 7.6418 -4.4666 22 1 13.1594 6.8522 -5.7212 23 1 12.1439 8.7835 -4.6638 24 1 14.4198 8.1555 -4.1105 25 6 11.3697 4.5915 -0.8983 26 6 7.4098 2.2723 -0.6829 27 6 6.3465 2.0077 0.3881 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.9989 3.1542 -1.3075 34 1 2.0698 1.5876 -2.1492 35 1 0.5489 2.1253 -1.3969 36 1 4.0030 0.9837 -0.7597 37 1 3.8571 0.8801 1.0113 38 1 6.3062 4.6346 1.4834 39 1 5.0469 5.1873 0.3493 40 1 7.3836 5.7111 -0.4368 41 1 6.4837 4.6689 -1.5652 42 1 8.4650 3.6953 0.5432 43 1 10.3285 2.7625 -0.1939 44 1 10.6907 2.6505 -3.0589 45 1 12.0513 2.3534 -1.8948 46 1 12.4935 7.9768 -1.7028 47 1 12.2097 4.3419 -0.2499 48 1 10.9224 5.5557 -0.6570 49 1 6.9487 2.2387 -1.6700 50 1 8.1879 1.5118 -0.6183 51 1 6.8203 1.9515 1.3681 52 1 5.8356 1.0687 0.1749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105705082.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:09 Heat of formation + Delta-G solvation = -57.341354 kcal Electronic energy + Delta-G solvation = -28289.804389 eV Core-core repulsion = 24483.037814 eV Total energy + Delta-G solvation = -3806.766574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.39421 -40.34149 -38.81561 -37.25992 -36.57496 -34.17708 -33.05423 -32.13099 -31.28351 -29.56019 -28.60881 -26.35734 -25.98975 -25.04328 -24.79668 -23.96992 -21.98563 -21.16148 -20.81122 -19.83814 -18.86036 -18.24103 -17.44320 -17.01978 -16.93104 -16.56754 -15.99372 -15.86338 -15.67836 -15.40725 -15.21517 -15.08931 -14.78330 -14.60721 -14.41320 -13.97972 -13.95292 -13.56672 -13.33077 -13.25850 -13.19266 -12.85132 -12.81320 -12.77942 -12.65841 -12.47354 -12.26042 -12.19121 -12.16667 -11.84622 -11.67478 -11.60885 -11.50379 -11.46639 -11.36897 -11.15969 -10.92998 -10.63238 -10.13451 -9.68360 -8.89700 -7.89970 -5.21601 1.42263 1.44492 1.54295 1.65999 2.01881 2.46739 2.69551 3.32259 3.50971 3.53386 3.70285 3.84064 3.87288 3.93508 4.01354 4.06155 4.14355 4.26319 4.27671 4.32251 4.44485 4.47315 4.54215 4.62988 4.67902 4.70290 4.74520 4.79157 4.79883 4.85479 4.86561 4.86720 4.93235 4.97861 5.01338 5.14410 5.17056 5.19819 5.20720 5.26802 5.28602 5.33952 5.37192 5.50784 5.52536 5.57228 5.61574 5.96324 6.44558 6.62311 6.92215 7.21700 7.61323 8.62716 9.27989 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.024303 B = 0.002215 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.838789 B =12637.385670 C =12893.633289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.075 4.075 4 H 0.058 0.942 5 C -0.153 4.153 6 C -0.131 4.131 7 C 0.507 3.493 8 O -0.582 6.582 9 N -0.615 5.615 10 C 0.123 3.877 11 C -0.126 4.126 12 C 0.083 3.917 13 O -0.374 6.374 14 C 0.065 3.935 15 C 0.112 3.888 16 N -0.640 5.640 17 C -0.222 4.222 18 H 0.082 0.918 19 C -0.074 4.074 20 N -0.954 5.954 21 Si 0.979 3.021 22 H -0.264 1.264 23 H -0.294 1.294 24 H -0.289 1.289 25 C 0.127 3.873 26 C -0.148 4.148 27 C 0.111 3.889 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.115 0.885 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.246 0.754 47 H 0.033 0.967 48 H 0.034 0.966 49 H 0.060 0.940 50 H 0.099 0.901 51 H 0.094 0.906 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.333 -19.379 9.105 28.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.094 4.094 4 H 0.077 0.923 5 C -0.210 4.210 6 C -0.170 4.170 7 C 0.298 3.702 8 O -0.463 6.463 9 N -0.348 5.348 10 C 0.000 4.000 11 C -0.165 4.165 12 C 0.026 3.974 13 O -0.293 6.293 14 C 0.007 3.993 15 C -0.013 4.013 16 N -0.367 5.367 17 C -0.350 4.350 18 H 0.100 0.900 19 C -0.266 4.266 20 N -0.604 5.604 21 Si 0.807 3.193 22 H -0.189 1.189 23 H -0.222 1.222 24 H -0.216 1.216 25 C 0.001 3.999 26 C -0.187 4.187 27 C -0.011 4.011 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.132 0.868 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.052 0.948 49 H 0.078 0.922 50 H 0.117 0.883 51 H 0.112 0.888 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.668 -18.547 8.739 28.411 hybrid contribution 0.836 1.493 -0.670 1.838 sum -18.832 -17.055 8.069 26.657 Atomic orbital electron populations 1.21828 0.95974 1.01925 1.01609 1.21557 0.95988 0.94584 1.03010 1.20901 0.93258 0.96944 0.98249 0.92312 1.21958 1.01308 1.00609 0.97144 1.21875 0.97164 0.91828 1.06183 1.21432 0.81339 0.92906 0.74530 1.90650 1.55261 1.48365 1.52009 1.48355 1.06523 1.07743 1.72181 1.21422 0.96217 0.83903 0.98466 1.21888 0.95787 0.99264 0.99512 1.22291 0.87954 0.94940 0.92261 1.88023 1.16035 1.82861 1.42391 1.23607 0.82569 0.95776 0.97392 1.22889 0.94578 0.87152 0.96650 1.45798 1.77135 1.07458 1.06279 1.19333 1.34936 0.91333 0.89436 0.90039 1.25645 1.03333 0.98352 0.99273 1.70033 1.55659 1.13681 1.20992 0.84996 0.77083 0.78492 0.78717 1.18872 1.22171 1.21641 1.22660 0.94009 0.97550 0.85716 1.22412 0.99424 0.96903 0.99933 1.22003 0.89491 0.89815 0.99795 0.91857 0.93219 0.93015 0.91052 0.90570 0.93851 0.92601 0.92503 0.87028 0.86006 0.89612 0.90377 0.91694 0.92973 0.90713 0.86796 0.93507 0.91197 0.94492 0.94951 0.94757 0.92157 0.88281 0.88803 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.67 71.98 0.70 -0.95 16 2 C -0.11 -1.11 5.40 30.60 0.17 -0.94 16 3 C -0.07 -1.09 2.04 -10.79 -0.02 -1.11 16 4 H 0.06 1.08 7.96 -2.39 -0.02 1.06 16 5 C -0.15 -2.79 8.69 71.98 0.63 -2.17 16 6 C -0.13 -1.62 3.52 29.85 0.11 -1.51 16 7 C 0.51 10.67 7.42 87.66 0.65 11.32 16 8 O -0.58 -17.29 13.38 -3.04 -0.04 -17.33 16 9 N -0.61 -11.69 2.97 -818.82 -2.43 -14.12 16 10 C 0.12 2.80 6.43 86.36 0.56 3.35 16 11 C -0.13 -3.50 5.73 30.67 0.18 -3.32 16 12 C 0.08 2.16 2.46 30.62 0.08 2.24 16 13 O -0.37 -13.99 10.04 -148.98 -1.50 -15.49 16 14 C 0.07 2.33 4.50 30.93 0.14 2.47 16 15 C 0.11 4.48 8.52 83.18 0.71 5.19 16 16 N -0.64 -34.24 3.78 -739.05 -2.80 -37.03 16 17 C -0.22 -13.10 10.75 84.03 0.90 -12.20 16 18 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 19 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 20 N -0.95 -60.16 11.51 21.65 0.25 -59.91 16 21 Si 0.98 47.82 29.55 68.60 2.03 49.85 16 22 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 C 0.13 6.10 7.24 83.18 0.60 6.70 16 26 C -0.15 -2.66 5.69 30.68 0.17 -2.48 16 27 C 0.11 1.33 6.34 86.37 0.55 1.88 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.60 6.56 -2.39 -0.02 0.59 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.53 16 33 H 0.04 1.07 5.95 -2.39 -0.01 1.06 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.96 6.57 -2.38 -0.02 0.95 16 36 H 0.11 1.03 7.69 -2.39 -0.02 1.01 16 37 H 0.12 0.81 7.94 -2.38 -0.02 0.79 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 2.07 7.00 -2.39 -0.02 2.05 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.72 7.71 -2.39 -0.02 1.71 16 43 H 0.11 2.90 7.76 -2.39 -0.02 2.88 16 44 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 48 H 0.03 1.92 7.12 -2.39 -0.02 1.90 16 49 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.12 0.73 5.93 -2.38 -0.01 0.71 16 Total: -1.00 -79.73 400.77 2.95 -76.78 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.87 Total: 12.71 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 6.57 Total: 4.54 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -4.98 Total: -111.07 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -1.54 Total: -32.81 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -79.73 2.95 -76.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105705082.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.443 kcal (2) G-P(sol) polarization free energy of solvation -79.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds