Wall clock time and date at job start Tue Mar 31 2020 14:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47117 * 2 1 4 4 H 1.08998 * 110.35083 * 52.85021 * 3 2 1 5 5 O 1.43647 * 110.30557 * 290.70903 * 3 2 1 6 6 C 1.43232 * 109.97038 * 216.65444 * 5 3 2 7 7 C 1.54387 * 107.58955 * 1.71463 * 6 5 3 8 8 C 1.54947 * 110.30865 * 175.00096 * 3 2 1 9 9 H 1.08996 * 111.12693 * 37.39315 * 8 3 2 10 10 C 1.50700 * 111.12048 * 273.27394 * 8 3 2 11 11 O 1.21284 * 120.00307 * 0.02562 * 10 8 3 12 12 N 1.34777 * 119.99631 * 180.02562 * 10 8 3 13 13 C 1.46509 * 119.99800 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47048 * 176.62347 * 13 12 10 15 15 N 1.46505 * 109.47315 * 54.62301 * 14 13 12 16 16 C 1.36946 * 119.99653 * 62.83770 * 15 14 13 17 17 H 1.07997 * 119.99886 * 354.24987 * 16 15 14 18 18 C 1.38808 * 119.99427 * 173.97317 * 16 15 14 19 19 N 1.31620 * 120.00304 * 0.28189 * 18 16 15 20 20 Si 1.86805 * 119.99524 * 180.27756 * 18 16 15 21 21 H 1.48502 * 109.47191 * 90.00323 * 20 18 16 22 22 H 1.48500 * 109.46993 * 210.00352 * 20 18 16 23 23 H 1.48495 * 109.47254 * 330.00040 * 20 18 16 24 24 C 1.52997 * 109.47133 * 174.62072 * 14 13 12 25 25 C 1.52999 * 109.47076 * 179.97438 * 24 14 13 26 26 C 1.52991 * 109.47417 * 300.00477 * 25 24 14 27 27 C 1.53001 * 109.47225 * 60.00225 * 26 25 24 28 28 C 1.52997 * 109.47230 * 294.62660 * 14 13 12 29 29 H 1.08999 * 109.47051 * 60.00621 * 1 2 3 30 30 H 1.09007 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47213 * 300.00171 * 1 2 3 32 32 H 1.09006 * 109.47397 * 240.00023 * 2 1 3 33 33 H 1.08995 * 109.47473 * 119.99622 * 2 1 3 34 34 H 1.09005 * 109.83130 * 121.22512 * 6 5 3 35 35 H 1.08998 * 109.83400 * 242.10810 * 6 5 3 36 36 H 1.09001 * 110.84737 * 263.16449 * 7 6 5 37 37 H 1.09001 * 110.84619 * 139.54356 * 7 6 5 38 38 H 0.97002 * 120.00277 * 359.97438 * 12 10 8 39 39 H 1.08999 * 109.47184 * 56.61871 * 13 12 10 40 40 H 1.08996 * 109.46682 * 296.61779 * 13 12 10 41 41 H 0.96998 * 120.00169 * 242.84343 * 15 14 13 42 42 H 0.97002 * 119.99668 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.47703 * 300.00498 * 24 14 13 44 44 H 1.09006 * 109.46729 * 59.99988 * 24 14 13 45 45 H 1.09001 * 109.46655 * 180.02562 * 25 24 14 46 46 H 1.09000 * 109.46824 * 60.00944 * 25 24 14 47 47 H 1.09000 * 109.47505 * 300.00050 * 26 25 24 48 48 H 1.09004 * 109.47307 * 179.97438 * 26 25 24 49 49 H 1.09000 * 109.47274 * 180.02562 * 27 26 25 50 50 H 1.08992 * 109.47272 * 59.99762 * 27 26 25 51 51 H 1.09006 * 109.46774 * 300.00099 * 28 14 13 52 52 H 1.09003 * 109.47310 * 59.99428 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5845 2.0057 0.8145 5 8 1.7570 2.0714 -1.2602 6 6 2.8319 2.9457 -1.6229 7 6 3.9115 2.8385 -0.5245 8 6 3.5841 1.4671 0.1266 9 1 4.0371 0.6480 -0.4319 10 6 4.0110 1.4362 1.5716 11 8 3.1757 1.3972 2.4500 12 7 5.3211 1.4519 1.8876 13 6 5.7362 1.4213 3.2923 14 6 7.2630 1.3625 3.3718 15 7 7.8349 2.4759 2.6105 16 6 7.5820 3.7669 2.9910 17 1 6.8877 3.9671 3.7937 18 6 8.2223 4.8178 2.3488 19 7 9.0683 4.5737 1.3705 20 14 7.8832 6.5784 2.8731 21 1 8.8418 6.9714 3.9370 22 1 8.0420 7.4819 1.7053 23 1 6.4963 6.6815 3.3936 24 6 7.7019 1.4657 4.8338 25 6 9.2287 1.4063 4.9133 26 6 9.7188 0.0814 4.3259 27 6 9.2799 -0.0218 2.8638 28 6 7.7536 0.0378 2.7842 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.2492 2.6403 -2.5825 35 1 2.4687 3.9713 -1.6874 36 1 3.8092 3.6463 0.2001 37 1 4.9101 2.8319 -0.9614 38 1 5.9892 1.4827 1.1850 39 1 5.3129 0.5416 3.7772 40 1 5.3805 2.3202 3.7958 41 1 8.3926 2.2987 1.8369 42 1 9.5161 5.3081 0.9220 43 1 7.3524 2.4094 5.2524 44 1 7.2764 0.6373 5.4002 45 1 9.5413 1.4794 5.9549 46 1 9.6545 2.2345 4.3469 47 1 9.2930 -0.7469 4.8923 48 1 10.8066 0.0392 4.3822 49 1 9.6287 -0.9659 2.4455 50 1 9.7057 0.8064 2.2974 51 1 7.3281 -0.7906 3.3506 52 1 7.4408 -0.0357 1.7426 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115640678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:23 Heat of formation + Delta-G solvation = -101.421823 kcal Electronic energy + Delta-G solvation = -29788.261718 eV Core-core repulsion = 25979.583671 eV Total energy + Delta-G solvation = -3808.678047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.31061 -39.07763 -37.97499 -34.50821 -33.57507 -33.29996 -32.34386 -31.03768 -30.26879 -28.69843 -28.32053 -25.64173 -23.83046 -23.63506 -22.46020 -22.03043 -20.85191 -20.39872 -19.74392 -18.38011 -17.52941 -17.11645 -16.37536 -15.64249 -15.23564 -15.12508 -14.75466 -14.70897 -14.11986 -14.04636 -13.85031 -13.63120 -13.43118 -13.27424 -13.24511 -12.94098 -12.78158 -12.25759 -11.95584 -11.93103 -11.74730 -11.69867 -11.58853 -11.42155 -11.15250 -10.91941 -10.91439 -10.80909 -10.80285 -10.62983 -10.57302 -10.21191 -10.07291 -9.84845 -9.68133 -9.56059 -9.37151 -9.32438 -8.92051 -8.48215 -7.05455 -5.85323 -3.14183 2.94478 3.37520 3.44694 3.45590 3.54753 3.83587 4.50907 4.52748 4.64008 4.87727 5.09425 5.15193 5.16119 5.18166 5.22632 5.25412 5.34009 5.38409 5.47692 5.53109 5.56844 5.70070 5.72858 5.79438 5.81367 5.85053 5.94728 5.95960 5.99234 6.01178 6.07395 6.08806 6.13335 6.16421 6.23479 6.26960 6.31121 6.42101 6.46730 6.56189 6.76123 6.77700 6.78767 6.94801 7.03329 7.04168 7.17403 7.67033 7.99551 8.32818 8.62021 9.45554 9.98127 10.34921 11.36469 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.004296 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.445686 B = 6515.523543 C = 8088.728899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.101 3.899 4 H 0.085 0.915 5 O -0.381 6.381 6 C 0.054 3.946 7 C -0.143 4.143 8 C -0.143 4.143 9 H 0.107 0.893 10 C 0.521 3.479 11 O -0.553 6.553 12 N -0.696 5.696 13 C 0.115 3.885 14 C 0.191 3.809 15 N -0.709 5.709 16 C -0.230 4.230 17 H 0.068 0.932 18 C -0.007 4.007 19 N -0.930 5.930 20 Si 0.898 3.102 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.283 1.283 24 C -0.114 4.114 25 C -0.109 4.109 26 C -0.112 4.112 27 C -0.115 4.115 28 C -0.113 4.113 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.403 0.597 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.043 0.957 46 H 0.083 0.917 47 H 0.049 0.951 48 H 0.051 0.949 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.058 0.942 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.690 -10.233 -2.623 12.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.044 3.956 4 H 0.103 0.897 5 O -0.300 6.300 6 C -0.023 4.023 7 C -0.181 4.181 8 C -0.165 4.165 9 H 0.125 0.875 10 C 0.306 3.694 11 O -0.432 6.432 12 N -0.345 5.345 13 C -0.011 4.011 14 C 0.099 3.901 15 N -0.351 5.351 16 C -0.361 4.361 17 H 0.086 0.914 18 C -0.203 4.203 19 N -0.579 5.579 20 Si 0.729 3.271 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.209 1.209 24 C -0.154 4.154 25 C -0.147 4.147 26 C -0.150 4.150 27 C -0.153 4.153 28 C -0.151 4.151 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.239 0.761 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.219 0.781 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.102 0.898 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.093 0.907 51 H 0.077 0.923 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.478 -10.122 -2.039 12.749 hybrid contribution 0.724 1.229 -0.154 1.434 sum -6.755 -8.893 -2.193 11.381 Atomic orbital electron populations 1.21689 0.95298 1.01247 1.02183 1.21627 0.96854 0.94673 1.02417 1.22835 0.91677 0.94528 0.86588 0.89697 1.88385 1.42702 1.60625 1.38336 1.23089 0.87114 0.94494 0.97587 1.23088 1.00677 0.96071 0.98290 1.23010 0.98204 1.00179 0.95077 0.87513 1.19990 0.82954 0.76572 0.89876 1.90663 1.51658 1.50994 1.49920 1.45769 1.06417 1.72621 1.09705 1.21883 0.97300 1.00653 0.81310 1.19818 0.89625 0.88481 0.92200 1.42445 1.59518 1.00436 1.32727 1.19064 1.19442 0.82868 1.14695 0.91386 1.24647 0.99153 0.97488 0.98987 1.69642 1.31858 1.30652 1.25716 0.86337 0.77707 0.85561 0.77482 1.21801 1.21943 1.20900 1.21787 0.96096 1.00675 0.96856 1.21371 0.95952 0.98060 0.99319 1.21469 0.99502 0.97884 0.96136 1.21464 0.95658 1.01185 0.96982 1.21677 0.96106 0.96996 1.00330 0.92266 0.92990 0.92680 0.91591 0.90505 0.91182 0.91278 0.89699 0.88820 0.76101 0.92911 0.91841 0.78076 0.93614 0.91789 0.93772 0.93794 0.89818 0.93250 0.93036 0.93310 0.90716 0.92320 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.85 37.16 0.37 -1.25 16 2 C -0.12 -1.42 5.66 -26.73 -0.15 -1.58 16 3 C 0.10 1.39 2.55 -25.70 -0.07 1.33 16 4 H 0.09 1.34 7.38 -51.93 -0.38 0.95 16 5 O -0.38 -5.26 10.81 -35.23 -0.38 -5.65 16 6 C 0.05 0.64 7.79 37.88 0.30 0.94 16 7 C -0.14 -1.87 6.49 -24.78 -0.16 -2.03 16 8 C -0.14 -1.92 2.90 -89.52 -0.26 -2.18 16 9 H 0.11 1.24 8.06 -51.93 -0.42 0.82 16 10 C 0.52 8.57 7.15 -10.99 -0.08 8.49 16 11 O -0.55 -10.77 15.72 5.55 0.09 -10.69 16 12 N -0.70 -11.35 5.09 -60.29 -0.31 -11.65 16 13 C 0.11 2.00 4.37 -4.04 -0.02 1.98 16 14 C 0.19 3.25 0.41 -131.82 -0.05 3.19 16 15 N -0.71 -14.69 3.40 -47.23 -0.16 -14.85 16 16 C -0.23 -5.57 8.70 -15.06 -0.13 -5.70 16 17 H 0.07 1.69 6.77 -52.49 -0.36 1.34 16 18 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 19 N -0.93 -25.43 13.07 55.49 0.73 -24.70 16 20 Si 0.90 21.37 29.55 -169.99 -5.02 16.35 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 C -0.11 -1.92 4.52 -26.73 -0.12 -2.04 16 25 C -0.11 -1.81 5.76 -26.74 -0.15 -1.96 16 26 C -0.11 -1.61 5.92 -26.74 -0.16 -1.77 16 27 C -0.12 -1.68 5.75 -26.75 -0.15 -1.84 16 28 C -0.11 -1.65 4.64 -26.76 -0.12 -1.77 16 29 H 0.06 0.66 7.99 -51.93 -0.42 0.25 16 30 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.40 6.38 7.39 -40.82 -0.30 6.07 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.27 7.50 -51.93 -0.39 0.88 16 41 H 0.38 8.58 6.63 -40.82 -0.27 8.31 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.06 1.19 7.23 -51.93 -0.38 0.81 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.68 7.60 -51.93 -0.39 1.28 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.07 1.27 6.92 -51.93 -0.36 0.91 16 51 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.06 0.80 7.28 -51.93 -0.38 0.42 16 LS Contribution 398.02 15.07 6.00 6.00 Total: -1.00 -27.67 398.02 -9.64 -37.31 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -9.51 Total: 14.34 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.06 Total: -6.46 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.26 Total: -51.20 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.29 Total: -16.33 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -27.67 -9.64 -37.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115640678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.111 kcal (2) G-P(sol) polarization free energy of solvation -27.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds