Wall clock time and date at job start Tue Mar 31 2020 14:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47117 * 2 1 4 4 H 1.08998 * 110.35083 * 52.85021 * 3 2 1 5 5 O 1.43647 * 110.30557 * 290.70903 * 3 2 1 6 6 C 1.43232 * 109.97038 * 216.65444 * 5 3 2 7 7 C 1.54387 * 107.58955 * 1.71463 * 6 5 3 8 8 C 1.54947 * 110.30865 * 175.00096 * 3 2 1 9 9 H 1.08996 * 111.12693 * 37.39315 * 8 3 2 10 10 C 1.50700 * 111.12048 * 273.27394 * 8 3 2 11 11 O 1.21284 * 120.00307 * 0.02562 * 10 8 3 12 12 N 1.34777 * 119.99631 * 180.02562 * 10 8 3 13 13 C 1.46509 * 119.99800 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47048 * 176.62347 * 13 12 10 15 15 N 1.46505 * 109.47315 * 54.62301 * 14 13 12 16 16 C 1.36946 * 119.99653 * 62.83770 * 15 14 13 17 17 H 1.07997 * 119.99886 * 354.24987 * 16 15 14 18 18 C 1.38808 * 119.99427 * 173.97317 * 16 15 14 19 19 N 1.31620 * 120.00304 * 0.28189 * 18 16 15 20 20 Si 1.86805 * 119.99524 * 180.27756 * 18 16 15 21 21 H 1.48502 * 109.47191 * 90.00323 * 20 18 16 22 22 H 1.48500 * 109.46993 * 210.00352 * 20 18 16 23 23 H 1.48495 * 109.47254 * 330.00040 * 20 18 16 24 24 C 1.52997 * 109.47133 * 174.62072 * 14 13 12 25 25 C 1.52999 * 109.47076 * 179.97438 * 24 14 13 26 26 C 1.52991 * 109.47417 * 300.00477 * 25 24 14 27 27 C 1.53001 * 109.47225 * 60.00225 * 26 25 24 28 28 C 1.52997 * 109.47230 * 294.62660 * 14 13 12 29 29 H 1.08999 * 109.47051 * 60.00621 * 1 2 3 30 30 H 1.09007 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47213 * 300.00171 * 1 2 3 32 32 H 1.09006 * 109.47397 * 240.00023 * 2 1 3 33 33 H 1.08995 * 109.47473 * 119.99622 * 2 1 3 34 34 H 1.09005 * 109.83130 * 121.22512 * 6 5 3 35 35 H 1.08998 * 109.83400 * 242.10810 * 6 5 3 36 36 H 1.09001 * 110.84737 * 263.16449 * 7 6 5 37 37 H 1.09001 * 110.84619 * 139.54356 * 7 6 5 38 38 H 0.97002 * 120.00277 * 359.97438 * 12 10 8 39 39 H 1.08999 * 109.47184 * 56.61871 * 13 12 10 40 40 H 1.08996 * 109.46682 * 296.61779 * 13 12 10 41 41 H 0.96998 * 120.00169 * 242.84343 * 15 14 13 42 42 H 0.97002 * 119.99668 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.47703 * 300.00498 * 24 14 13 44 44 H 1.09006 * 109.46729 * 59.99988 * 24 14 13 45 45 H 1.09001 * 109.46655 * 180.02562 * 25 24 14 46 46 H 1.09000 * 109.46824 * 60.00944 * 25 24 14 47 47 H 1.09000 * 109.47505 * 300.00050 * 26 25 24 48 48 H 1.09004 * 109.47307 * 179.97438 * 26 25 24 49 49 H 1.09000 * 109.47274 * 180.02562 * 27 26 25 50 50 H 1.08992 * 109.47272 * 59.99762 * 27 26 25 51 51 H 1.09006 * 109.46774 * 300.00099 * 28 14 13 52 52 H 1.09003 * 109.47310 * 59.99428 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5845 2.0057 0.8145 5 8 1.7570 2.0714 -1.2602 6 6 2.8319 2.9457 -1.6229 7 6 3.9115 2.8385 -0.5245 8 6 3.5841 1.4671 0.1266 9 1 4.0371 0.6480 -0.4319 10 6 4.0110 1.4362 1.5716 11 8 3.1757 1.3972 2.4500 12 7 5.3211 1.4519 1.8876 13 6 5.7362 1.4213 3.2923 14 6 7.2630 1.3625 3.3718 15 7 7.8349 2.4759 2.6105 16 6 7.5820 3.7669 2.9910 17 1 6.8877 3.9671 3.7937 18 6 8.2223 4.8178 2.3488 19 7 9.0683 4.5737 1.3705 20 14 7.8832 6.5784 2.8731 21 1 8.8418 6.9714 3.9370 22 1 8.0420 7.4819 1.7053 23 1 6.4963 6.6815 3.3936 24 6 7.7019 1.4657 4.8338 25 6 9.2287 1.4063 4.9133 26 6 9.7188 0.0814 4.3259 27 6 9.2799 -0.0218 2.8638 28 6 7.7536 0.0378 2.7842 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.2492 2.6403 -2.5825 35 1 2.4687 3.9713 -1.6874 36 1 3.8092 3.6463 0.2001 37 1 4.9101 2.8319 -0.9614 38 1 5.9892 1.4827 1.1850 39 1 5.3129 0.5416 3.7772 40 1 5.3805 2.3202 3.7958 41 1 8.3926 2.2987 1.8369 42 1 9.5161 5.3081 0.9220 43 1 7.3524 2.4094 5.2524 44 1 7.2764 0.6373 5.4002 45 1 9.5413 1.4794 5.9549 46 1 9.6545 2.2345 4.3469 47 1 9.2930 -0.7469 4.8923 48 1 10.8066 0.0392 4.3822 49 1 9.6287 -0.9659 2.4455 50 1 9.7057 0.8064 2.2974 51 1 7.3281 -0.7906 3.3506 52 1 7.4408 -0.0357 1.7426 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115640678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:22 Heat of formation + Delta-G solvation = -117.281389 kcal Electronic energy + Delta-G solvation = -29788.949441 eV Core-core repulsion = 25979.583671 eV Total energy + Delta-G solvation = -3809.365769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.53431 -40.38855 -39.26770 -35.89800 -35.08171 -34.48961 -33.56457 -32.56893 -31.54991 -30.27498 -29.40052 -26.93900 -25.69697 -24.68927 -23.62723 -23.26890 -21.92783 -21.65030 -21.04288 -19.81030 -19.06417 -18.63534 -17.48588 -16.99360 -16.68116 -16.40593 -16.09709 -15.88116 -15.72490 -15.50863 -15.04015 -14.86907 -14.81231 -14.47807 -14.31855 -14.27334 -13.92862 -13.58050 -13.40004 -13.25068 -13.15024 -12.90721 -12.82986 -12.70473 -12.59609 -12.51109 -12.40670 -12.05903 -11.93619 -11.87602 -11.77335 -11.67436 -11.62684 -11.31154 -11.09417 -10.93107 -10.70153 -10.67290 -10.46924 -9.90558 -8.89483 -7.87224 -5.11062 1.43364 1.47537 1.51464 1.61910 2.26682 2.58496 2.77389 3.42955 3.46059 3.59711 3.74140 3.82876 3.93614 4.01903 4.06955 4.14123 4.14551 4.20525 4.22419 4.40662 4.42496 4.48678 4.53131 4.67679 4.76075 4.77698 4.78004 4.82282 4.82416 4.85059 4.91848 4.97227 5.00524 5.03289 5.07952 5.09135 5.18764 5.22802 5.26489 5.40043 5.46181 5.49984 5.51677 5.58303 5.62225 5.69685 5.81441 5.99891 6.35853 6.65066 7.28270 7.45271 8.17562 8.44372 9.34875 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011249 B = 0.004296 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.445686 B = 6515.523543 C = 8088.728899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C 0.102 3.898 4 H 0.057 0.943 5 O -0.389 6.389 6 C 0.053 3.947 7 C -0.142 4.142 8 C -0.135 4.135 9 H 0.135 0.865 10 C 0.520 3.480 11 O -0.586 6.586 12 N -0.692 5.692 13 C 0.122 3.878 14 C 0.190 3.810 15 N -0.707 5.707 16 C -0.205 4.205 17 H 0.059 0.941 18 C -0.057 4.057 19 N -0.956 5.956 20 Si 0.941 3.059 21 H -0.295 1.295 22 H -0.299 1.299 23 H -0.285 1.285 24 C -0.114 4.114 25 C -0.106 4.106 26 C -0.108 4.108 27 C -0.112 4.112 28 C -0.107 4.107 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.407 0.593 39 H 0.066 0.934 40 H 0.030 0.970 41 H 0.378 0.622 42 H 0.246 0.754 43 H 0.037 0.963 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.041 0.959 47 H 0.073 0.927 48 H 0.058 0.942 49 H 0.074 0.926 50 H 0.044 0.956 51 H 0.082 0.918 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.890 -12.713 -3.150 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C 0.045 3.955 4 H 0.075 0.925 5 O -0.309 6.309 6 C -0.023 4.023 7 C -0.180 4.180 8 C -0.157 4.157 9 H 0.153 0.847 10 C 0.306 3.694 11 O -0.467 6.467 12 N -0.341 5.341 13 C -0.005 4.005 14 C 0.099 3.901 15 N -0.348 5.348 16 C -0.338 4.338 17 H 0.077 0.923 18 C -0.250 4.250 19 N -0.608 5.608 20 Si 0.773 3.227 21 H -0.223 1.223 22 H -0.226 1.226 23 H -0.210 1.210 24 C -0.153 4.153 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.150 4.150 28 C -0.145 4.145 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.244 0.756 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.212 0.788 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.092 0.908 48 H 0.077 0.923 49 H 0.093 0.907 50 H 0.062 0.938 51 H 0.101 0.899 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.691 -12.619 -2.550 14.996 hybrid contribution 0.733 1.975 0.094 2.109 sum -6.958 -10.644 -2.456 12.951 Atomic orbital electron populations 1.21672 0.94675 1.02281 1.01584 1.21616 0.97451 0.93362 1.02835 1.22754 0.91637 0.95264 0.85891 0.92510 1.88377 1.43552 1.60934 1.38021 1.23218 0.86331 0.94746 0.97992 1.23060 1.01763 0.94985 0.98159 1.23014 0.98236 1.01304 0.93108 0.84724 1.20493 0.82469 0.75477 0.90945 1.90649 1.52416 1.52403 1.51253 1.45751 1.06654 1.72405 1.09339 1.21738 0.97254 0.99619 0.81857 1.20016 0.89091 0.88765 0.92225 1.42454 1.59250 1.00280 1.32825 1.19146 1.17343 0.84425 1.12861 0.92328 1.25070 1.00288 0.99659 1.00027 1.69735 1.33416 1.30546 1.27077 0.85632 0.77149 0.83253 0.76635 1.22280 1.22600 1.21042 1.21776 0.96515 1.00412 0.96639 1.21298 0.95400 0.98115 0.99569 1.21450 1.00111 0.96959 0.96002 1.21426 0.95353 1.01286 0.96913 1.21650 0.96239 0.95634 1.00945 0.92488 0.91143 0.93654 0.89977 0.91090 0.88746 0.90813 0.92221 0.87809 0.75611 0.91553 0.95202 0.78825 0.94463 0.94445 0.91027 0.92633 0.94058 0.90818 0.92334 0.90695 0.93756 0.89948 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.85 71.98 0.71 -2.29 16 2 C -0.12 -2.59 5.66 30.60 0.17 -2.41 16 3 C 0.10 2.73 2.55 31.26 0.08 2.81 16 4 H 0.06 1.83 7.38 -2.39 -0.02 1.81 16 5 O -0.39 -10.19 10.81 -148.98 -1.61 -11.80 16 6 C 0.05 1.19 7.79 72.45 0.56 1.75 16 7 C -0.14 -3.58 6.49 31.86 0.21 -3.37 16 8 C -0.14 -3.46 2.90 -10.08 -0.03 -3.49 16 9 H 0.13 2.72 8.06 -2.39 -0.02 2.70 16 10 C 0.52 16.83 7.15 87.66 0.63 17.45 16 11 O -0.59 -22.95 15.72 -3.04 -0.05 -23.00 16 12 N -0.69 -22.03 5.09 -463.04 -2.36 -24.39 16 13 C 0.12 4.16 4.37 86.38 0.38 4.54 16 14 C 0.19 6.26 0.41 3.60 0.00 6.26 16 15 N -0.71 -29.45 3.40 -303.34 -1.03 -30.48 16 16 C -0.21 -10.16 8.70 84.03 0.73 -9.42 16 17 H 0.06 3.00 6.77 -2.91 -0.02 2.98 16 18 C -0.06 -3.05 5.50 84.86 0.47 -2.58 16 19 N -0.96 -53.32 13.07 21.65 0.28 -53.04 16 20 Si 0.94 44.97 29.55 68.60 2.03 47.00 16 21 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 23 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 24 C -0.11 -3.70 4.52 30.59 0.14 -3.56 16 25 C -0.11 -3.39 5.76 30.59 0.18 -3.21 16 26 C -0.11 -2.78 5.92 30.59 0.18 -2.60 16 27 C -0.11 -2.98 5.75 30.58 0.18 -2.81 16 28 C -0.11 -2.81 4.64 30.58 0.14 -2.67 16 29 H 0.06 1.20 7.99 -2.39 -0.02 1.18 16 30 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.80 8.03 -2.39 -0.02 1.78 16 37 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.41 12.40 7.39 -92.71 -0.69 11.71 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.03 1.22 7.50 -2.39 -0.02 1.20 16 41 H 0.38 16.98 6.63 -92.71 -0.61 16.37 16 42 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 43 H 0.04 1.39 7.23 -2.39 -0.02 1.38 16 44 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.04 1.67 7.60 -2.39 -0.02 1.65 16 47 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 48 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 49 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.04 1.46 6.92 -2.39 -0.02 1.45 16 51 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 52 H 0.06 1.61 7.28 -2.39 -0.02 1.59 16 Total: -1.00 -61.13 398.02 1.58 -59.55 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: -0.40 Total: 41.78 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 4.72 Total: -5.61 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -3.11 Total: -107.91 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -1.66 Total: -34.80 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -61.13 1.58 -59.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115640678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.729 kcal (2) G-P(sol) polarization free energy of solvation -61.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds