Wall clock time and date at job start Tue Mar 31 2020 14:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 H 1.08998 * 109.48089 * 305.02359 * 3 2 1 5 5 O 1.42903 * 109.49116 * 65.04933 * 3 2 1 6 6 C 1.42902 * 114.10091 * 181.14828 * 5 3 2 7 7 C 1.53093 * 109.41265 * 298.84072 * 6 5 3 8 8 C 1.53183 * 109.16118 * 57.61080 * 7 6 5 9 9 C 1.53089 * 109.48248 * 185.00022 * 3 2 1 10 10 H 1.09004 * 109.51955 * 302.36570 * 9 3 2 11 11 C 1.50695 * 109.52618 * 62.48839 * 9 3 2 12 12 O 1.21284 * 119.99919 * 0.02562 * 11 9 3 13 13 N 1.34779 * 120.00484 * 180.02562 * 11 9 3 14 14 C 1.46491 * 120.00028 * 184.94058 * 13 11 9 15 15 C 1.53005 * 109.47019 * 184.93817 * 14 13 11 16 16 C 1.53003 * 109.47109 * 185.22673 * 15 14 13 17 17 C 1.52996 * 115.54950 * 294.71435 * 16 15 14 18 18 N 1.46502 * 109.47414 * 294.84045 * 17 16 15 19 19 C 1.36938 * 120.00214 * 184.94585 * 18 17 16 20 20 H 1.07997 * 119.99822 * 354.73162 * 19 18 17 21 21 C 1.38812 * 120.00040 * 174.72929 * 19 18 17 22 22 N 1.31622 * 119.99771 * 184.56996 * 21 19 18 23 23 Si 1.86797 * 119.99894 * 4.57305 * 21 19 18 24 24 H 1.48496 * 109.47233 * 94.32974 * 23 21 19 25 25 H 1.48503 * 109.46879 * 214.33007 * 23 21 19 26 26 H 1.48501 * 109.47222 * 334.32298 * 23 21 19 27 27 C 1.52999 * 117.49758 * 80.38823 * 16 15 14 28 28 C 1.53000 * 117.49555 * 149.04780 * 16 15 14 29 29 H 1.09000 * 109.47221 * 300.00097 * 1 2 3 30 30 H 1.08999 * 109.46960 * 60.00029 * 1 2 3 31 31 H 1.09007 * 109.47235 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47221 * 239.99903 * 2 1 3 33 33 H 1.08999 * 109.46960 * 119.99971 * 2 1 3 34 34 H 1.08998 * 109.48028 * 58.82377 * 6 5 3 35 35 H 1.08999 * 109.48367 * 178.86165 * 6 5 3 36 36 H 1.09004 * 109.52047 * 177.51279 * 7 6 5 37 37 H 1.09002 * 109.52341 * 297.69986 * 7 6 5 38 38 H 1.08995 * 109.53999 * 183.15402 * 8 7 6 39 39 H 1.08995 * 109.54783 * 62.88342 * 8 7 6 40 40 H 0.96996 * 119.99479 * 4.93623 * 13 11 9 41 41 H 1.09002 * 109.47276 * 64.94102 * 14 13 11 42 42 H 1.08998 * 109.47160 * 304.93375 * 14 13 11 43 43 H 1.08998 * 109.47193 * 65.22550 * 15 14 13 44 44 H 1.09003 * 109.47061 * 305.22464 * 15 14 13 45 45 H 1.09006 * 109.46857 * 54.83770 * 17 16 15 46 46 H 1.08993 * 109.47377 * 174.83309 * 17 16 15 47 47 H 0.96997 * 119.99664 * 4.93570 * 18 17 16 48 48 H 0.97001 * 119.99775 * 180.02562 * 22 21 19 49 49 H 1.09003 * 117.49498 * 214.99771 * 27 16 15 50 50 H 1.08992 * 117.50118 * 0.02562 * 27 16 15 51 51 H 1.08993 * 117.50269 * 359.97327 * 28 16 15 52 52 H 1.09005 * 117.49639 * 144.97511 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 -0.8415 5 8 1.6632 2.0815 1.2214 6 6 2.0698 3.4482 1.3146 7 6 3.5968 3.5309 1.2417 8 6 4.0733 2.8885 -0.0648 9 6 3.5657 1.4446 -0.1258 10 1 3.9994 0.8701 0.6928 11 6 3.9635 0.8261 -1.4411 12 8 3.1112 0.4232 -2.2042 13 7 5.2664 0.7206 -1.7697 14 6 5.6501 0.2197 -3.0917 15 6 7.1724 0.0832 -3.1632 16 6 7.5827 -0.3146 -4.5825 17 6 7.1115 -1.6953 -5.0431 18 7 7.7575 -2.7284 -4.2296 19 6 7.5665 -4.0517 -4.5254 20 1 6.8738 -4.3366 -5.3033 21 6 8.2635 -5.0269 -3.8253 22 7 8.1486 -6.2923 -4.1689 23 14 9.3643 -4.5434 -2.3958 24 1 8.6042 -4.6571 -1.1252 25 1 10.5422 -5.4466 -2.3505 26 1 9.8219 -3.1421 -2.5752 27 6 7.6547 0.7945 -5.6340 28 6 8.9423 0.1727 -5.0875 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6354 4.0137 0.4903 35 1 1.7281 3.8654 2.2618 36 1 3.9067 4.5756 1.2682 37 1 4.0312 2.9995 2.0885 38 1 5.1627 2.8937 -0.0974 39 1 3.6791 3.4497 -0.9120 40 1 5.9498 0.9764 -1.1307 41 1 5.3117 0.9180 -3.8572 42 1 5.1899 -0.7541 -3.2590 43 1 7.5019 -0.6831 -2.4615 44 1 7.6351 1.0357 -2.9047 45 1 6.0297 -1.7667 -4.9291 46 1 7.3766 -1.8390 -6.0905 47 1 8.3205 -2.4749 -3.4816 48 1 8.6354 -6.9738 -3.6794 49 1 7.3664 0.5404 -6.6540 50 1 7.4102 1.8075 -5.3146 51 1 9.5442 0.7769 -4.4088 52 1 9.5012 -0.4907 -5.7477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165420460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:11 Heat of formation + Delta-G solvation = -66.985340 kcal Electronic energy + Delta-G solvation = -28427.120020 eV Core-core repulsion = 24619.935251 eV Total energy + Delta-G solvation = -3807.184769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.75682 -38.97381 -38.27742 -35.14022 -34.17250 -34.02622 -33.84817 -31.13862 -30.75451 -29.64553 -26.34856 -25.65441 -24.96003 -23.23306 -22.44202 -21.79674 -21.47294 -21.25162 -20.28948 -18.84897 -17.64992 -17.31929 -16.78425 -16.10775 -15.72123 -15.64543 -15.15370 -14.96865 -14.63982 -14.56507 -14.19350 -14.03761 -13.78910 -13.54398 -13.37450 -13.13808 -13.01657 -12.63274 -12.47065 -12.45789 -12.06857 -11.93551 -11.67030 -11.54971 -11.53277 -11.34483 -11.27057 -11.17242 -10.93491 -10.87081 -10.69883 -10.50570 -10.14371 -9.95670 -9.89857 -9.66497 -9.56976 -9.49457 -9.07012 -8.83442 -7.19776 -5.75942 -3.10569 2.51446 2.98726 3.35679 3.37996 3.44242 3.56547 3.92556 4.22820 4.33530 4.37324 4.54034 4.59195 4.75364 4.84107 4.86528 4.93401 4.95199 5.02085 5.12569 5.14437 5.14791 5.28275 5.33889 5.37309 5.42520 5.45338 5.52379 5.54018 5.57533 5.62435 5.63522 5.77916 5.79191 5.83606 5.84296 6.01247 6.05411 6.09720 6.12350 6.25782 6.28549 6.31228 6.34081 6.43316 6.68227 6.72121 6.95763 7.38635 8.02628 8.12776 8.43673 9.23641 9.95744 10.17080 11.42570 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.002911 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.528003 B = 9614.890322 C =10536.097917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.114 3.886 4 H 0.066 0.934 5 O -0.375 6.375 6 C 0.058 3.942 7 C -0.154 4.154 8 C -0.113 4.113 9 C -0.141 4.141 10 H 0.105 0.895 11 C 0.519 3.481 12 O -0.531 6.531 13 N -0.727 5.727 14 C 0.121 3.879 15 C -0.089 4.089 16 C -0.127 4.127 17 C 0.192 3.808 18 N -0.752 5.752 19 C -0.242 4.242 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.884 3.116 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.276 1.276 27 C -0.172 4.172 28 C -0.167 4.167 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.398 0.602 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.029 0.971 46 H 0.031 0.969 47 H 0.362 0.638 48 H 0.259 0.741 49 H 0.095 0.905 50 H 0.089 0.911 51 H 0.088 0.912 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.156 24.400 10.156 27.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C 0.056 3.944 4 H 0.084 0.916 5 O -0.293 6.293 6 C -0.019 4.019 7 C -0.192 4.192 8 C -0.150 4.150 9 C -0.163 4.163 10 H 0.123 0.877 11 C 0.305 3.695 12 O -0.408 6.408 13 N -0.378 5.378 14 C -0.002 4.002 15 C -0.127 4.127 16 C -0.128 4.128 17 C 0.064 3.936 18 N -0.398 5.398 19 C -0.372 4.372 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.582 5.582 23 Si 0.715 3.285 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.210 4.210 28 C -0.204 4.204 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.232 0.768 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.047 0.953 46 H 0.049 0.951 47 H 0.195 0.805 48 H 0.069 0.931 49 H 0.113 0.887 50 H 0.108 0.892 51 H 0.106 0.894 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.954 23.801 9.595 27.180 hybrid contribution 1.552 0.476 1.183 2.008 sum -7.402 24.277 10.778 27.574 Atomic orbital electron populations 1.21655 0.95316 1.01494 1.01710 1.21783 0.96889 0.93744 1.03875 1.21872 0.90450 0.95216 0.86837 0.91583 1.87973 1.78214 1.24313 1.38838 1.22579 0.93605 0.83622 1.02130 1.22203 0.97240 1.01696 0.98084 1.21579 1.01295 0.93645 0.98521 1.22028 0.99469 0.97933 0.96841 0.87707 1.20315 0.82571 0.78642 0.87962 1.90694 1.49670 1.48129 1.52304 1.46044 1.07217 1.66863 1.17695 1.21400 0.95117 1.00599 0.83046 1.21225 0.94195 1.01218 0.96038 1.21627 1.01071 0.96291 0.93799 1.20167 0.95523 0.83692 0.94167 1.42682 1.59032 1.02644 1.35413 1.19060 1.20356 0.80765 1.17035 0.89294 1.24671 0.99609 0.95182 0.99717 1.69717 1.46578 0.99381 1.42494 0.86533 0.80847 0.77416 0.83710 1.21243 1.21764 1.20256 1.22988 1.02241 0.96980 0.98771 1.22978 0.90508 1.03240 1.03658 0.92487 0.92956 0.92782 0.88156 0.91805 0.93194 0.88791 0.90468 0.90688 0.90806 0.91176 0.76848 0.91656 0.90064 0.90549 0.91896 0.95290 0.95092 0.80510 0.93111 0.88699 0.89235 0.89387 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.81 37.16 0.36 -1.17 16 2 C -0.13 -1.47 5.41 -26.73 -0.14 -1.61 16 3 C 0.11 1.23 1.78 -26.69 -0.05 1.18 16 4 H 0.07 0.76 8.04 -51.93 -0.42 0.35 16 5 O -0.37 -3.83 9.94 -35.23 -0.35 -4.18 16 6 C 0.06 0.41 6.84 37.21 0.25 0.67 16 7 C -0.15 -0.94 6.14 -26.59 -0.16 -1.10 16 8 C -0.11 -0.80 5.20 -26.54 -0.14 -0.94 16 9 C -0.14 -1.34 2.23 -91.64 -0.20 -1.55 16 10 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 11 C 0.52 6.38 6.83 -10.99 -0.08 6.31 16 12 O -0.53 -8.48 13.82 5.55 0.08 -8.40 16 13 N -0.73 -7.99 5.44 -60.30 -0.33 -8.32 16 14 C 0.12 1.59 5.43 -4.04 -0.02 1.56 16 15 C -0.09 -1.14 5.13 -26.73 -0.14 -1.27 16 16 C -0.13 -1.86 1.56 -154.51 -0.24 -2.10 16 17 C 0.19 3.69 5.94 -4.04 -0.02 3.66 16 18 N -0.75 -17.71 5.32 -59.91 -0.32 -18.03 16 19 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 20 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -29.60 13.97 55.49 0.78 -28.82 16 23 Si 0.88 22.09 27.92 -169.99 -4.75 17.35 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.40 6.27 56.52 0.35 -6.05 16 27 C -0.17 -2.09 9.94 -26.69 -0.27 -2.35 16 28 C -0.17 -2.24 9.94 -26.69 -0.27 -2.51 16 29 H 0.06 0.58 7.83 -51.93 -0.41 0.18 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 1.39 5.65 -51.93 -0.29 1.09 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.43 7.82 -51.93 -0.41 0.02 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.40 3.29 8.15 -40.82 -0.33 2.96 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.33 7.20 -51.93 -0.37 0.95 16 43 H 0.08 1.10 7.49 -51.93 -0.39 0.71 16 44 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 45 H 0.03 0.58 7.11 -51.93 -0.37 0.21 16 46 H 0.03 0.62 8.09 -51.93 -0.42 0.20 16 47 H 0.36 8.30 4.78 -40.82 -0.20 8.10 16 48 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 49 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 51 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 52 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 405.63 15.07 6.11 6.11 Total: -1.00 -33.39 405.63 -9.69 -43.08 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -9.55 Total: 9.49 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.36 Total: -8.27 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.13 Total: -55.17 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.27 Total: -12.59 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.75 Total: 17.35 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.39 -9.69 -43.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165420460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.910 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds