Wall clock time and date at job start Tue Mar 31 2020 14:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 H 1.08998 * 109.48089 * 305.02359 * 3 2 1 5 5 O 1.42903 * 109.49116 * 65.04933 * 3 2 1 6 6 C 1.42902 * 114.10091 * 181.14828 * 5 3 2 7 7 C 1.53093 * 109.41265 * 298.84072 * 6 5 3 8 8 C 1.53183 * 109.16118 * 57.61080 * 7 6 5 9 9 C 1.53089 * 109.48248 * 185.00022 * 3 2 1 10 10 H 1.09004 * 109.51955 * 302.36570 * 9 3 2 11 11 C 1.50695 * 109.52618 * 62.48839 * 9 3 2 12 12 O 1.21284 * 119.99919 * 0.02562 * 11 9 3 13 13 N 1.34779 * 120.00484 * 180.02562 * 11 9 3 14 14 C 1.46491 * 120.00028 * 184.94058 * 13 11 9 15 15 C 1.53005 * 109.47019 * 184.93817 * 14 13 11 16 16 C 1.53003 * 109.47109 * 185.22673 * 15 14 13 17 17 C 1.52996 * 115.54950 * 294.71435 * 16 15 14 18 18 N 1.46502 * 109.47414 * 294.84045 * 17 16 15 19 19 C 1.36938 * 120.00214 * 184.94585 * 18 17 16 20 20 H 1.07997 * 119.99822 * 354.73162 * 19 18 17 21 21 C 1.38812 * 120.00040 * 174.72929 * 19 18 17 22 22 N 1.31622 * 119.99771 * 184.56996 * 21 19 18 23 23 Si 1.86797 * 119.99894 * 4.57305 * 21 19 18 24 24 H 1.48496 * 109.47233 * 94.32974 * 23 21 19 25 25 H 1.48503 * 109.46879 * 214.33007 * 23 21 19 26 26 H 1.48501 * 109.47222 * 334.32298 * 23 21 19 27 27 C 1.52999 * 117.49758 * 80.38823 * 16 15 14 28 28 C 1.53000 * 117.49555 * 149.04780 * 16 15 14 29 29 H 1.09000 * 109.47221 * 300.00097 * 1 2 3 30 30 H 1.08999 * 109.46960 * 60.00029 * 1 2 3 31 31 H 1.09007 * 109.47235 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47221 * 239.99903 * 2 1 3 33 33 H 1.08999 * 109.46960 * 119.99971 * 2 1 3 34 34 H 1.08998 * 109.48028 * 58.82377 * 6 5 3 35 35 H 1.08999 * 109.48367 * 178.86165 * 6 5 3 36 36 H 1.09004 * 109.52047 * 177.51279 * 7 6 5 37 37 H 1.09002 * 109.52341 * 297.69986 * 7 6 5 38 38 H 1.08995 * 109.53999 * 183.15402 * 8 7 6 39 39 H 1.08995 * 109.54783 * 62.88342 * 8 7 6 40 40 H 0.96996 * 119.99479 * 4.93623 * 13 11 9 41 41 H 1.09002 * 109.47276 * 64.94102 * 14 13 11 42 42 H 1.08998 * 109.47160 * 304.93375 * 14 13 11 43 43 H 1.08998 * 109.47193 * 65.22550 * 15 14 13 44 44 H 1.09003 * 109.47061 * 305.22464 * 15 14 13 45 45 H 1.09006 * 109.46857 * 54.83770 * 17 16 15 46 46 H 1.08993 * 109.47377 * 174.83309 * 17 16 15 47 47 H 0.96997 * 119.99664 * 4.93570 * 18 17 16 48 48 H 0.97001 * 119.99775 * 180.02562 * 22 21 19 49 49 H 1.09003 * 117.49498 * 214.99771 * 27 16 15 50 50 H 1.08992 * 117.50118 * 0.02562 * 27 16 15 51 51 H 1.08993 * 117.50269 * 359.97327 * 28 16 15 52 52 H 1.09005 * 117.49639 * 144.97511 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 -0.8415 5 8 1.6632 2.0815 1.2214 6 6 2.0698 3.4482 1.3146 7 6 3.5968 3.5309 1.2417 8 6 4.0733 2.8885 -0.0648 9 6 3.5657 1.4446 -0.1258 10 1 3.9994 0.8701 0.6928 11 6 3.9635 0.8261 -1.4411 12 8 3.1112 0.4232 -2.2042 13 7 5.2664 0.7206 -1.7697 14 6 5.6501 0.2197 -3.0917 15 6 7.1724 0.0832 -3.1632 16 6 7.5827 -0.3146 -4.5825 17 6 7.1115 -1.6953 -5.0431 18 7 7.7575 -2.7284 -4.2296 19 6 7.5665 -4.0517 -4.5254 20 1 6.8738 -4.3366 -5.3033 21 6 8.2635 -5.0269 -3.8253 22 7 8.1486 -6.2923 -4.1689 23 14 9.3643 -4.5434 -2.3958 24 1 8.6042 -4.6571 -1.1252 25 1 10.5422 -5.4466 -2.3505 26 1 9.8219 -3.1421 -2.5752 27 6 7.6547 0.7945 -5.6340 28 6 8.9423 0.1727 -5.0875 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6354 4.0137 0.4903 35 1 1.7281 3.8654 2.2618 36 1 3.9067 4.5756 1.2682 37 1 4.0312 2.9995 2.0885 38 1 5.1627 2.8937 -0.0974 39 1 3.6791 3.4497 -0.9120 40 1 5.9498 0.9764 -1.1307 41 1 5.3117 0.9180 -3.8572 42 1 5.1899 -0.7541 -3.2590 43 1 7.5019 -0.6831 -2.4615 44 1 7.6351 1.0357 -2.9047 45 1 6.0297 -1.7667 -4.9291 46 1 7.3766 -1.8390 -6.0905 47 1 8.3205 -2.4749 -3.4816 48 1 8.6354 -6.9738 -3.6794 49 1 7.3664 0.5404 -6.6540 50 1 7.4102 1.8075 -5.3146 51 1 9.5442 0.7769 -4.4088 52 1 9.5012 -0.4907 -5.7477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165420460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:10 Heat of formation + Delta-G solvation = -89.288948 kcal Electronic energy + Delta-G solvation = -28428.087177 eV Core-core repulsion = 24619.935251 eV Total energy + Delta-G solvation = -3808.151926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.61535 -39.93869 -39.33636 -36.25597 -35.88303 -34.84529 -34.67972 -33.23880 -31.62741 -30.53584 -28.12405 -26.32109 -25.83707 -24.30883 -24.11251 -22.99930 -22.32174 -22.03354 -21.13503 -20.37366 -19.25664 -18.35627 -17.56095 -17.02523 -16.80555 -16.61573 -16.39432 -16.26103 -15.81542 -15.46646 -15.27654 -15.26231 -14.91775 -14.68646 -14.46359 -14.26176 -14.12098 -13.93589 -13.85853 -13.51991 -13.15172 -13.09067 -12.86620 -12.69618 -12.49843 -12.30394 -12.29408 -12.20746 -12.15102 -11.94008 -11.86302 -11.80255 -11.69897 -11.23725 -11.16648 -10.94772 -10.78086 -10.60904 -10.37460 -10.08035 -9.28910 -8.04533 -5.37665 1.34348 1.39970 1.47610 1.56823 2.08240 2.47080 2.81169 2.87389 3.26493 3.48458 3.66012 3.67820 3.71207 3.80046 3.90469 3.99018 4.04063 4.08593 4.10733 4.18565 4.22902 4.34531 4.40664 4.45022 4.48348 4.55151 4.61460 4.72812 4.80805 4.84303 4.88502 4.88825 4.90139 4.95933 5.00084 5.07023 5.08646 5.11802 5.15386 5.22279 5.23396 5.30642 5.31816 5.34802 5.38132 5.49853 5.73938 6.19749 6.26132 6.51775 7.07103 7.22489 7.83116 8.05750 9.17346 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.002911 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.528003 B = 9614.890322 C =10536.097917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.118 3.882 4 H 0.052 0.948 5 O -0.388 6.388 6 C 0.047 3.953 7 C -0.148 4.148 8 C -0.110 4.110 9 C -0.133 4.133 10 H 0.114 0.886 11 C 0.515 3.485 12 O -0.575 6.575 13 N -0.714 5.714 14 C 0.129 3.871 15 C -0.078 4.078 16 C -0.146 4.146 17 C 0.189 3.811 18 N -0.749 5.749 19 C -0.237 4.237 20 H 0.049 0.951 21 C -0.066 4.066 22 N -0.986 5.986 23 Si 0.960 3.040 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.243 1.243 27 C -0.148 4.148 28 C -0.164 4.164 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.415 0.585 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.016 0.984 46 H 0.019 0.981 47 H 0.369 0.631 48 H 0.258 0.742 49 H 0.091 0.909 50 H 0.120 0.880 51 H 0.115 0.885 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 28.379 12.417 31.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C 0.060 3.940 4 H 0.070 0.930 5 O -0.308 6.308 6 C -0.029 4.029 7 C -0.186 4.186 8 C -0.147 4.147 9 C -0.155 4.155 10 H 0.132 0.868 11 C 0.303 3.697 12 O -0.455 6.455 13 N -0.366 5.366 14 C 0.006 3.994 15 C -0.115 4.115 16 C -0.147 4.147 17 C 0.063 3.937 18 N -0.395 5.395 19 C -0.368 4.368 20 H 0.067 0.933 21 C -0.258 4.258 22 N -0.636 5.636 23 Si 0.786 3.214 24 H -0.207 1.207 25 H -0.221 1.221 26 H -0.168 1.168 27 C -0.186 4.186 28 C -0.201 4.201 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.252 0.748 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.121 0.879 45 H 0.034 0.966 46 H 0.037 0.963 47 H 0.203 0.797 48 H 0.067 0.933 49 H 0.110 0.890 50 H 0.138 0.862 51 H 0.133 0.867 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.101 27.852 11.865 31.096 hybrid contribution 0.855 -0.780 0.364 1.213 sum -6.246 27.072 12.229 30.355 Atomic orbital electron populations 1.21623 0.94725 1.01709 1.01753 1.21726 0.97531 0.94662 1.02590 1.21680 0.91294 0.94251 0.86768 0.93015 1.87946 1.78685 1.25988 1.38143 1.22856 0.94849 0.82062 1.03157 1.22181 0.96005 1.02992 0.97375 1.21627 1.02520 0.91499 0.99087 1.21990 0.98627 0.99719 0.95115 0.86786 1.20862 0.82430 0.77931 0.88523 1.90684 1.50939 1.49955 1.53912 1.45899 1.07364 1.66057 1.17330 1.21168 0.95475 0.98567 0.84239 1.21150 0.93502 1.02632 0.94235 1.21446 1.03048 0.94322 0.95891 1.20220 0.94548 0.85842 0.93068 1.42610 1.59240 1.01535 1.36158 1.19019 1.18948 0.83316 1.15562 0.93343 1.25585 1.01992 0.94955 1.03224 1.69917 1.48382 1.00903 1.44398 0.85328 0.78172 0.78648 0.79225 1.20653 1.22098 1.16751 1.23087 1.00439 0.97265 0.97763 1.23047 0.90304 1.03063 1.03647 0.91907 0.93326 0.92521 0.90701 0.91672 0.92997 0.87113 0.88201 0.90353 0.88681 0.91617 0.74823 0.91262 0.94375 0.92087 0.87852 0.96643 0.96341 0.79735 0.93312 0.89033 0.86160 0.86685 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.81 71.98 0.71 -2.36 16 2 C -0.13 -3.08 5.41 30.59 0.17 -2.91 16 3 C 0.12 2.50 1.78 30.62 0.05 2.55 16 4 H 0.05 1.22 8.04 -2.39 -0.02 1.20 16 5 O -0.39 -7.45 9.94 -148.98 -1.48 -8.94 16 6 C 0.05 0.57 6.84 72.01 0.49 1.06 16 7 C -0.15 -1.29 6.14 30.69 0.19 -1.10 16 8 C -0.11 -1.23 5.20 30.72 0.16 -1.07 16 9 C -0.13 -2.34 2.23 -11.45 -0.03 -2.36 16 10 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 11 C 0.52 12.36 6.83 87.66 0.60 12.95 16 12 O -0.58 -19.01 13.82 -3.04 -0.04 -19.05 16 13 N -0.71 -14.38 5.44 -463.07 -2.52 -16.90 16 14 C 0.13 3.24 5.43 86.38 0.47 3.71 16 15 C -0.08 -1.75 5.13 30.60 0.16 -1.59 16 16 C -0.15 -3.97 1.56 -52.18 -0.08 -4.05 16 17 C 0.19 7.40 5.94 86.38 0.51 7.92 16 18 N -0.75 -35.51 5.32 -343.46 -1.83 -37.33 16 19 C -0.24 -14.01 10.47 84.03 0.88 -13.13 16 20 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 21 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 22 N -0.99 -64.67 13.97 21.65 0.30 -64.36 16 23 Si 0.96 45.58 27.92 68.60 1.92 47.50 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.24 -10.11 6.27 99.48 0.62 -9.49 16 27 C -0.15 -3.09 9.94 30.62 0.30 -2.79 16 28 C -0.16 -3.85 9.94 30.62 0.30 -3.55 16 29 H 0.06 1.28 7.83 -2.39 -0.02 1.26 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.07 2.21 5.65 -2.39 -0.01 2.19 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 0.68 7.82 -2.39 -0.02 0.67 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.41 5.45 8.15 -92.71 -0.76 4.69 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.04 1.29 7.20 -2.39 -0.02 1.27 16 43 H 0.06 1.58 7.49 -2.39 -0.02 1.57 16 44 H 0.10 1.55 8.09 -2.39 -0.02 1.53 16 45 H 0.02 0.65 7.11 -2.38 -0.02 0.64 16 46 H 0.02 0.76 8.09 -2.39 -0.02 0.74 16 47 H 0.37 16.34 4.78 -92.71 -0.44 15.90 16 48 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 49 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 52 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -77.12 405.63 1.31 -75.81 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -0.39 Total: 33.52 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.35 Total: -10.25 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -4.04 Total: -118.60 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -1.52 Total: -27.98 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.92 Total: 47.50 kcal Total: -77.12 1.31 -75.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165420460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.478 kcal (2) G-P(sol) polarization free energy of solvation -77.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds