Wall clock time and date at job start Tue Mar 31 2020 14:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47396 * 2 1 4 4 H 1.08998 * 110.67542 * 52.03198 * 3 2 1 5 5 O 1.44425 * 110.64942 * 289.06750 * 3 2 1 6 6 C 1.43751 * 106.99657 * 201.48100 * 5 3 2 7 7 C 1.54096 * 107.29539 * 26.48976 * 6 5 3 8 8 C 1.54810 * 104.18619 * 357.96883 * 7 6 5 9 9 H 1.09004 * 110.90858 * 97.35749 * 8 7 6 10 10 C 1.50709 * 110.90793 * 220.91854 * 8 7 6 11 11 O 1.21280 * 119.99738 * 115.67083 * 10 8 7 12 12 N 1.34774 * 119.99774 * 295.67714 * 10 8 7 13 13 C 1.48143 * 127.84171 * 359.97438 * 12 10 8 14 14 C 1.54393 * 104.61731 * 219.58760 * 13 12 10 15 15 H 1.08996 * 110.33960 * 95.00200 * 14 13 12 16 16 C 1.52998 * 110.34236 * 217.15613 * 14 13 12 17 17 C 1.54291 * 104.96016 * 336.13392 * 14 13 12 18 18 C 1.53000 * 110.34102 * 241.12991 * 17 14 13 19 19 C 1.52994 * 110.34016 * 118.86937 * 17 14 13 20 20 N 1.46504 * 109.46808 * 183.00567 * 19 17 14 21 21 C 1.36935 * 119.99771 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00367 * 0.02562 * 21 20 19 23 23 C 1.38817 * 120.00027 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99987 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99724 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47431 * 90.00087 * 25 23 21 27 27 H 1.48506 * 109.46884 * 210.00165 * 25 23 21 28 28 H 1.48505 * 109.47192 * 329.99651 * 25 23 21 29 29 C 1.48146 * 127.83284 * 179.97438 * 12 10 8 30 30 H 1.08999 * 109.47773 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46824 * 300.00438 * 1 2 3 32 32 H 1.09007 * 109.47089 * 60.00017 * 1 2 3 33 33 H 1.09001 * 109.47123 * 240.00021 * 2 1 3 34 34 H 1.08998 * 109.47019 * 120.00227 * 2 1 3 35 35 H 1.09005 * 109.87796 * 267.06135 * 6 5 3 36 36 H 1.08997 * 109.87531 * 145.91603 * 6 5 3 37 37 H 1.08996 * 110.48842 * 239.29278 * 7 6 5 38 38 H 1.08998 * 110.48846 * 116.64236 * 7 6 5 39 39 H 1.09001 * 110.40952 * 338.37248 * 13 12 10 40 40 H 1.09000 * 110.40414 * 100.80359 * 13 12 10 41 41 H 1.09005 * 109.46758 * 58.54751 * 16 14 13 42 42 H 1.08999 * 109.47005 * 178.54601 * 16 14 13 43 43 H 1.08996 * 109.47298 * 298.54946 * 16 14 13 44 44 H 1.08998 * 109.47121 * 176.98818 * 18 17 14 45 45 H 1.09001 * 109.47149 * 296.99141 * 18 17 14 46 46 H 1.08998 * 109.47288 * 56.98966 * 18 17 14 47 47 H 1.09000 * 109.47615 * 303.00742 * 19 17 14 48 48 H 1.09005 * 109.47213 * 63.01238 * 19 17 14 49 49 H 0.96996 * 119.99823 * 0.02562 * 20 19 17 50 50 H 0.96997 * 119.99533 * 179.97438 * 24 23 21 51 51 H 1.09008 * 110.40723 * 259.19651 * 29 12 10 52 52 H 1.09000 * 110.41329 * 21.62260 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5768 2.0145 0.8040 5 8 1.7936 2.0698 -1.2773 6 6 2.7084 3.1732 -1.3870 7 6 3.9342 2.8404 -0.5145 8 6 3.5844 1.4753 0.1264 9 1 4.0379 0.6560 -0.4316 10 6 4.0066 1.4361 1.5726 11 8 3.1711 1.3326 2.4456 12 7 5.3126 1.5162 1.8956 13 6 6.4693 1.6450 0.9791 14 6 7.5574 0.7393 1.5953 15 1 7.5346 -0.2479 1.1339 16 6 8.9386 1.3744 1.4225 17 6 7.1932 0.6407 3.0914 18 6 8.3231 1.2091 3.9523 19 6 6.9102 -0.8130 3.4751 20 7 6.4973 -0.8758 4.8793 21 6 6.1893 -2.0823 5.4491 22 1 6.2512 -2.9876 4.8634 23 6 5.7976 -2.1419 6.7795 24 7 5.5020 -3.3016 7.3272 25 14 5.6899 -0.5760 7.7923 26 1 4.3251 -0.0030 7.6743 27 1 5.9749 -0.8869 9.2162 28 1 6.6844 0.4067 7.2917 29 6 5.9171 1.4955 3.2480 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 2.2335 4.0857 -1.0265 36 1 3.0155 3.2981 -2.4254 37 1 4.0717 3.5994 0.2556 38 1 4.8291 2.7544 -1.1308 39 1 6.2044 1.2956 -0.0188 40 1 6.8117 2.6792 0.9422 41 1 8.9500 2.3545 1.8994 42 1 9.6921 0.7367 1.8846 43 1 9.1575 1.4846 0.3604 44 1 8.0293 1.1817 5.0016 45 1 9.2234 0.6111 3.8113 46 1 8.5215 2.2395 3.6574 47 1 6.1134 -1.2069 2.8441 48 1 7.8126 -1.4082 3.3348 49 1 6.4414 -0.0627 5.4052 50 1 5.2287 -3.3432 8.2570 51 1 6.1732 2.5064 3.5654 52 1 5.2354 1.0334 3.9621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182150379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:09 Heat of formation + Delta-G solvation = -72.148039 kcal Electronic energy + Delta-G solvation = -29741.327476 eV Core-core repulsion = 25933.918836 eV Total energy + Delta-G solvation = -3807.408640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.82969 -39.62848 -37.92414 -34.98071 -33.70760 -33.44303 -32.40893 -31.65094 -30.02254 -28.69823 -27.20275 -26.14712 -25.79837 -23.86817 -23.16338 -22.25502 -21.21504 -20.95487 -19.31903 -18.60930 -17.89219 -17.13441 -16.36648 -16.25473 -15.59915 -15.59134 -14.98443 -14.68137 -14.52068 -14.12251 -13.89896 -13.81775 -13.67250 -13.45455 -13.31994 -13.17090 -12.91231 -12.65133 -12.31973 -12.13251 -12.07487 -11.81974 -11.72680 -11.63580 -11.57256 -11.43661 -11.29382 -11.07791 -10.93140 -10.89112 -10.80977 -10.58635 -10.38102 -10.23713 -10.00224 -9.93224 -9.68399 -9.53350 -8.87467 -8.68521 -7.20157 -5.73948 -3.09074 2.61003 2.87201 3.37862 3.42942 3.47854 3.58639 4.18000 4.32249 4.38954 4.46254 4.60403 4.61994 4.69358 4.78442 4.93014 4.95563 5.09632 5.14119 5.21226 5.24263 5.27014 5.33597 5.35043 5.42963 5.44206 5.47416 5.57762 5.59963 5.61199 5.69261 5.72564 5.73327 5.81311 5.82725 5.92223 5.98621 5.99702 6.08227 6.08964 6.18555 6.26827 6.27341 6.37889 6.51183 6.63896 6.68452 6.73912 7.57114 8.01444 8.16900 8.44885 9.23597 9.96036 10.15362 11.44705 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011690 B = 0.004122 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.637328 B = 6791.788526 C = 8387.634992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.098 3.902 4 H 0.085 0.915 5 O -0.372 6.372 6 C 0.049 3.951 7 C -0.144 4.144 8 C -0.138 4.138 9 H 0.111 0.889 10 C 0.543 3.457 11 O -0.528 6.528 12 N -0.617 5.617 13 C 0.105 3.895 14 C -0.098 4.098 15 H 0.084 0.916 16 C -0.142 4.142 17 C -0.080 4.080 18 C -0.135 4.135 19 C 0.174 3.826 20 N -0.752 5.752 21 C -0.242 4.242 22 H 0.089 0.911 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.880 3.120 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.278 1.278 29 C 0.110 3.890 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.025 0.975 48 H 0.029 0.971 49 H 0.360 0.640 50 H 0.259 0.741 51 H 0.066 0.934 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.668 15.296 -20.267 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.041 3.959 4 H 0.102 0.898 5 O -0.291 6.291 6 C -0.028 4.028 7 C -0.182 4.182 8 C -0.159 4.159 9 H 0.129 0.871 10 C 0.331 3.669 11 O -0.403 6.403 12 N -0.351 5.351 13 C -0.018 4.018 14 C -0.117 4.117 15 H 0.103 0.897 16 C -0.199 4.199 17 C -0.082 4.082 18 C -0.193 4.193 19 C 0.047 3.953 20 N -0.399 5.399 21 C -0.372 4.372 22 H 0.107 0.893 23 C -0.189 4.189 24 N -0.582 5.582 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.204 1.204 29 C -0.012 4.012 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.043 0.957 48 H 0.047 0.953 49 H 0.194 0.806 50 H 0.069 0.931 51 H 0.084 0.916 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.880 14.922 -19.945 24.925 hybrid contribution 0.234 1.077 0.993 1.483 sum 1.115 15.999 -18.952 24.828 Atomic orbital electron populations 1.21695 0.95042 1.01725 1.02032 1.21553 0.97041 0.93726 1.03055 1.23046 0.91157 0.95484 0.86227 0.89752 1.88900 1.58313 1.44908 1.36975 1.23102 0.88962 0.90406 1.00309 1.22940 0.99715 0.95900 0.99693 1.22889 0.98918 1.00046 0.94063 0.87131 1.19759 0.80654 0.76230 0.90254 1.90767 1.50020 1.49147 1.50399 1.48869 1.04764 1.72400 1.09038 1.22532 0.85741 0.99755 0.93750 1.22140 0.94521 0.99675 0.95397 0.89735 1.21893 0.95847 1.01086 1.01109 1.21772 0.94656 0.97479 0.94270 1.21890 0.97665 0.99747 0.99953 1.20623 0.97164 0.90957 0.86551 1.42726 1.83081 1.06403 1.07655 1.19026 1.37719 0.85930 0.94533 0.89324 1.24638 1.01406 0.96147 0.96746 1.69697 1.52399 1.22841 1.13295 0.86613 0.78045 0.84074 0.80199 1.20922 1.21680 1.20382 1.22556 0.94604 0.99216 0.84851 0.92572 0.92597 0.92388 0.91296 0.89854 0.92246 0.89621 0.90266 0.89637 0.90582 0.91028 0.92103 0.91688 0.92915 0.92121 0.91766 0.92744 0.95694 0.95331 0.80615 0.93087 0.91597 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.86 37.15 0.37 -1.29 16 2 C -0.12 -1.41 5.69 -26.73 -0.15 -1.56 16 3 C 0.10 1.20 2.36 -25.68 -0.06 1.14 16 4 H 0.08 1.17 7.48 -51.93 -0.39 0.78 16 5 O -0.37 -4.29 11.09 -35.23 -0.39 -4.68 16 6 C 0.05 0.42 7.70 37.73 0.29 0.71 16 7 C -0.14 -1.18 5.67 -25.21 -0.14 -1.33 16 8 C -0.14 -1.53 2.14 -89.76 -0.19 -1.72 16 9 H 0.11 1.11 7.87 -51.93 -0.41 0.70 16 10 C 0.54 8.05 7.15 -10.98 -0.08 7.98 16 11 O -0.53 -10.19 16.03 5.56 0.09 -10.10 16 12 N -0.62 -8.28 3.32 -169.30 -0.56 -8.84 16 13 C 0.11 1.00 5.82 -2.41 -0.01 0.98 16 14 C -0.10 -1.03 3.30 -89.21 -0.29 -1.32 16 15 H 0.08 0.93 7.71 -51.93 -0.40 0.53 16 16 C -0.14 -1.16 7.93 37.16 0.29 -0.87 16 17 C -0.08 -1.14 0.73 -153.10 -0.11 -1.26 16 18 C -0.14 -1.78 7.09 37.16 0.26 -1.52 16 19 C 0.17 3.33 4.96 -4.04 -0.02 3.31 16 20 N -0.75 -17.95 4.58 -59.91 -0.27 -18.22 16 21 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 22 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.95 13.97 55.49 0.78 -29.18 16 25 Si 0.88 22.65 27.74 -169.99 -4.71 17.94 16 26 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 29 C 0.11 1.68 5.87 -2.41 -0.01 1.67 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 38 H 0.08 0.51 7.79 -51.93 -0.40 0.11 16 39 H 0.08 0.58 6.82 -51.93 -0.35 0.23 16 40 H 0.07 0.56 7.86 -51.93 -0.41 0.15 16 41 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 42 H 0.06 0.57 7.07 -51.93 -0.37 0.20 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.95 7.01 -51.93 -0.36 0.58 16 45 H 0.06 0.81 7.07 -51.93 -0.37 0.44 16 46 H 0.05 0.57 6.54 -51.93 -0.34 0.23 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.36 8.41 3.85 -40.82 -0.16 8.25 16 50 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 51 H 0.07 0.90 7.86 -51.92 -0.41 0.49 16 52 H 0.10 1.87 6.72 -51.93 -0.35 1.52 16 LS Contribution 393.47 15.07 5.93 5.93 Total: -1.00 -34.54 393.47 -8.55 -43.09 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -9.28 Total: 6.20 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.12 Total: -2.13 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.06 Total: -56.24 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.30 Total: -14.79 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.71 Total: 17.94 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.54 -8.55 -43.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182150379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.057 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds