Wall clock time and date at job start Tue Mar 31 2020 14:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47396 * 2 1 4 4 H 1.08998 * 110.67542 * 52.03198 * 3 2 1 5 5 O 1.44425 * 110.64942 * 289.06750 * 3 2 1 6 6 C 1.43751 * 106.99657 * 201.48100 * 5 3 2 7 7 C 1.54096 * 107.29539 * 26.48976 * 6 5 3 8 8 C 1.54810 * 104.18619 * 357.96883 * 7 6 5 9 9 H 1.09004 * 110.90858 * 97.35749 * 8 7 6 10 10 C 1.50709 * 110.90793 * 220.91854 * 8 7 6 11 11 O 1.21280 * 119.99738 * 115.67083 * 10 8 7 12 12 N 1.34774 * 119.99774 * 295.67714 * 10 8 7 13 13 C 1.48143 * 127.84171 * 359.97438 * 12 10 8 14 14 C 1.54393 * 104.61731 * 219.58760 * 13 12 10 15 15 H 1.08996 * 110.33960 * 95.00200 * 14 13 12 16 16 C 1.52998 * 110.34236 * 217.15613 * 14 13 12 17 17 C 1.54291 * 104.96016 * 336.13392 * 14 13 12 18 18 C 1.53000 * 110.34102 * 241.12991 * 17 14 13 19 19 C 1.52994 * 110.34016 * 118.86937 * 17 14 13 20 20 N 1.46504 * 109.46808 * 183.00567 * 19 17 14 21 21 C 1.36935 * 119.99771 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00367 * 0.02562 * 21 20 19 23 23 C 1.38817 * 120.00027 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99987 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99724 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47431 * 90.00087 * 25 23 21 27 27 H 1.48506 * 109.46884 * 210.00165 * 25 23 21 28 28 H 1.48505 * 109.47192 * 329.99651 * 25 23 21 29 29 C 1.48146 * 127.83284 * 179.97438 * 12 10 8 30 30 H 1.08999 * 109.47773 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46824 * 300.00438 * 1 2 3 32 32 H 1.09007 * 109.47089 * 60.00017 * 1 2 3 33 33 H 1.09001 * 109.47123 * 240.00021 * 2 1 3 34 34 H 1.08998 * 109.47019 * 120.00227 * 2 1 3 35 35 H 1.09005 * 109.87796 * 267.06135 * 6 5 3 36 36 H 1.08997 * 109.87531 * 145.91603 * 6 5 3 37 37 H 1.08996 * 110.48842 * 239.29278 * 7 6 5 38 38 H 1.08998 * 110.48846 * 116.64236 * 7 6 5 39 39 H 1.09001 * 110.40952 * 338.37248 * 13 12 10 40 40 H 1.09000 * 110.40414 * 100.80359 * 13 12 10 41 41 H 1.09005 * 109.46758 * 58.54751 * 16 14 13 42 42 H 1.08999 * 109.47005 * 178.54601 * 16 14 13 43 43 H 1.08996 * 109.47298 * 298.54946 * 16 14 13 44 44 H 1.08998 * 109.47121 * 176.98818 * 18 17 14 45 45 H 1.09001 * 109.47149 * 296.99141 * 18 17 14 46 46 H 1.08998 * 109.47288 * 56.98966 * 18 17 14 47 47 H 1.09000 * 109.47615 * 303.00742 * 19 17 14 48 48 H 1.09005 * 109.47213 * 63.01238 * 19 17 14 49 49 H 0.96996 * 119.99823 * 0.02562 * 20 19 17 50 50 H 0.96997 * 119.99533 * 179.97438 * 24 23 21 51 51 H 1.09008 * 110.40723 * 259.19651 * 29 12 10 52 52 H 1.09000 * 110.41329 * 21.62260 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5768 2.0145 0.8040 5 8 1.7936 2.0698 -1.2773 6 6 2.7084 3.1732 -1.3870 7 6 3.9342 2.8404 -0.5145 8 6 3.5844 1.4753 0.1264 9 1 4.0379 0.6560 -0.4316 10 6 4.0066 1.4361 1.5726 11 8 3.1711 1.3326 2.4456 12 7 5.3126 1.5162 1.8956 13 6 6.4693 1.6450 0.9791 14 6 7.5574 0.7393 1.5953 15 1 7.5346 -0.2479 1.1339 16 6 8.9386 1.3744 1.4225 17 6 7.1932 0.6407 3.0914 18 6 8.3231 1.2091 3.9523 19 6 6.9102 -0.8130 3.4751 20 7 6.4973 -0.8758 4.8793 21 6 6.1893 -2.0823 5.4491 22 1 6.2512 -2.9876 4.8634 23 6 5.7976 -2.1419 6.7795 24 7 5.5020 -3.3016 7.3272 25 14 5.6899 -0.5760 7.7923 26 1 4.3251 -0.0030 7.6743 27 1 5.9749 -0.8869 9.2162 28 1 6.6844 0.4067 7.2917 29 6 5.9171 1.4955 3.2480 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 2.2335 4.0857 -1.0265 36 1 3.0155 3.2981 -2.4254 37 1 4.0717 3.5994 0.2556 38 1 4.8291 2.7544 -1.1308 39 1 6.2044 1.2956 -0.0188 40 1 6.8117 2.6792 0.9422 41 1 8.9500 2.3545 1.8994 42 1 9.6921 0.7367 1.8846 43 1 9.1575 1.4846 0.3604 44 1 8.0293 1.1817 5.0016 45 1 9.2234 0.6111 3.8113 46 1 8.5215 2.2395 3.6574 47 1 6.1134 -1.2069 2.8441 48 1 7.8126 -1.4082 3.3348 49 1 6.4414 -0.0627 5.4052 50 1 5.2287 -3.3432 8.2570 51 1 6.1732 2.5064 3.5654 52 1 5.2354 1.0334 3.9621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182150379.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:08 Heat of formation + Delta-G solvation = -95.818389 kcal Electronic energy + Delta-G solvation = -29742.353899 eV Core-core repulsion = 25933.918836 eV Total energy + Delta-G solvation = -3808.435064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.84441 -40.59825 -39.05393 -36.67284 -34.85935 -34.54545 -33.46640 -33.23555 -31.44729 -29.52230 -28.30805 -27.60704 -26.70444 -25.05458 -24.58112 -23.24603 -22.20107 -22.12603 -20.39503 -20.16014 -19.32874 -18.30305 -17.34919 -17.21246 -16.70740 -16.60823 -16.40515 -16.19405 -15.66005 -15.36804 -15.22677 -14.85588 -14.65415 -14.63705 -14.53962 -14.33069 -14.05806 -13.96220 -13.58569 -13.22762 -13.12929 -13.06157 -12.93663 -12.69800 -12.65529 -12.60369 -12.45779 -12.27110 -12.14130 -11.92308 -11.90369 -11.83464 -11.67422 -11.61336 -11.35203 -11.18962 -11.05074 -10.95127 -10.63194 -9.77314 -9.33928 -8.08492 -5.40772 1.28172 1.35011 1.39876 1.51054 1.84976 2.42007 2.75616 3.23168 3.31822 3.43140 3.50569 3.53251 3.64558 3.74103 3.92390 3.99217 4.08039 4.14677 4.18142 4.23469 4.30810 4.35405 4.37316 4.46570 4.55855 4.63763 4.70066 4.73063 4.75661 4.79086 4.82598 4.84836 4.88461 4.94513 4.98345 5.01273 5.03931 5.06124 5.11383 5.16009 5.21348 5.30671 5.31420 5.38442 5.43923 5.65535 5.69765 5.86957 6.15866 6.53218 7.02576 7.06570 7.79012 7.97555 9.13515 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011690 B = 0.004122 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.637328 B = 6791.788526 C = 8387.634992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C 0.099 3.901 4 H 0.058 0.942 5 O -0.383 6.383 6 C 0.042 3.958 7 C -0.134 4.134 8 C -0.130 4.130 9 H 0.127 0.873 10 C 0.534 3.466 11 O -0.588 6.588 12 N -0.617 5.617 13 C 0.104 3.896 14 C -0.091 4.091 15 H 0.078 0.922 16 C -0.137 4.137 17 C -0.073 4.073 18 C -0.132 4.132 19 C 0.172 3.828 20 N -0.753 5.753 21 C -0.234 4.234 22 H 0.053 0.947 23 C -0.060 4.060 24 N -0.983 5.983 25 Si 0.947 3.053 26 H -0.289 1.289 27 H -0.288 1.288 28 H -0.245 1.245 29 C 0.107 3.893 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.032 0.968 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.003 0.997 48 H 0.029 0.971 49 H 0.365 0.635 50 H 0.258 0.742 51 H 0.090 0.910 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.011 18.684 -23.185 30.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.041 3.959 4 H 0.076 0.924 5 O -0.303 6.303 6 C -0.035 4.035 7 C -0.172 4.172 8 C -0.152 4.152 9 H 0.145 0.855 10 C 0.324 3.676 11 O -0.468 6.468 12 N -0.349 5.349 13 C -0.017 4.017 14 C -0.111 4.111 15 H 0.096 0.904 16 C -0.194 4.194 17 C -0.074 4.074 18 C -0.189 4.189 19 C 0.046 3.954 20 N -0.399 5.399 21 C -0.365 4.365 22 H 0.071 0.929 23 C -0.252 4.252 24 N -0.634 5.634 25 Si 0.774 3.226 26 H -0.216 1.216 27 H -0.214 1.214 28 H -0.170 1.170 29 C -0.016 4.016 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.140 0.860 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.110 0.890 47 H 0.021 0.979 48 H 0.047 0.953 49 H 0.199 0.801 50 H 0.067 0.933 51 H 0.108 0.892 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.291 18.349 -22.932 29.553 hybrid contribution -0.510 -0.062 1.814 1.886 sum 2.780 18.287 -21.117 28.073 Atomic orbital electron populations 1.21675 0.94576 1.02190 1.01789 1.21517 0.97579 0.94010 1.02313 1.22846 0.92094 0.94894 0.86043 0.92430 1.88882 1.59514 1.45911 1.35974 1.23370 0.88571 0.89461 1.02065 1.22980 1.00979 0.93490 0.99724 1.22863 0.97973 1.02688 0.91653 0.85510 1.20478 0.80600 0.75133 0.91360 1.90738 1.51799 1.51935 1.52351 1.48987 1.05388 1.71293 1.09233 1.22878 0.83444 1.01485 0.93880 1.22139 0.96738 1.00266 0.91948 0.90396 1.21871 0.93418 1.01125 1.02975 1.21683 0.94822 0.93384 0.97551 1.21898 0.97019 1.02046 0.97923 1.20778 0.95931 0.95098 0.83591 1.42723 1.82877 1.04732 1.09584 1.19024 1.36394 0.86706 0.94389 0.92858 1.25451 1.01907 0.99672 0.98172 1.69874 1.54323 1.25493 1.13667 0.85526 0.78341 0.80415 0.78281 1.21552 1.21434 1.16951 1.22481 0.93917 1.00075 0.85135 0.91773 0.93760 0.91618 0.89863 0.92556 0.92027 0.86859 0.90497 0.86022 0.87906 0.87730 0.90862 0.92321 0.90396 0.94889 0.91164 0.89050 0.97922 0.95289 0.80093 0.93290 0.89238 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.86 71.98 0.71 -2.64 16 2 C -0.12 -2.91 5.69 30.59 0.17 -2.74 16 3 C 0.10 2.42 2.36 31.28 0.07 2.49 16 4 H 0.06 1.70 7.48 -2.39 -0.02 1.68 16 5 O -0.38 -8.21 11.09 -148.98 -1.65 -9.87 16 6 C 0.04 0.57 7.70 72.35 0.56 1.13 16 7 C -0.13 -1.69 5.67 31.58 0.18 -1.51 16 8 C -0.13 -2.68 2.14 -10.24 -0.02 -2.70 16 9 H 0.13 2.19 7.87 -2.39 -0.02 2.18 16 10 C 0.53 15.78 7.15 87.66 0.63 16.41 16 11 O -0.59 -24.04 16.03 -3.03 -0.05 -24.09 16 12 N -0.62 -15.51 3.32 -807.92 -2.68 -18.19 16 13 C 0.10 1.49 5.82 86.54 0.50 1.99 16 14 C -0.09 -1.59 3.30 -9.88 -0.03 -1.62 16 15 H 0.08 1.49 7.71 -2.39 -0.02 1.47 16 16 C -0.14 -1.52 7.93 71.98 0.57 -0.95 16 17 C -0.07 -1.96 0.73 -51.27 -0.04 -1.99 16 18 C -0.13 -3.09 7.09 71.98 0.51 -2.58 16 19 C 0.17 6.70 4.96 86.38 0.43 7.13 16 20 N -0.75 -36.83 4.58 -343.45 -1.57 -38.40 16 21 C -0.23 -14.09 10.47 84.03 0.88 -13.21 16 22 H 0.05 3.51 8.06 -2.91 -0.02 3.49 16 23 C -0.06 -3.74 5.50 84.86 0.47 -3.28 16 24 N -0.98 -65.59 13.97 21.65 0.30 -65.29 16 25 Si 0.95 47.89 27.74 68.60 1.90 49.80 16 26 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 27 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 28 H -0.25 -10.96 6.52 99.48 0.65 -10.31 16 29 C 0.11 3.17 5.87 86.54 0.51 3.68 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.40 8.06 -2.38 -0.02 1.38 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.05 7.85 -2.39 -0.02 1.03 16 38 H 0.12 0.69 7.79 -2.39 -0.02 0.67 16 39 H 0.10 0.99 6.82 -2.39 -0.02 0.97 16 40 H 0.10 0.93 7.86 -2.39 -0.02 0.91 16 41 H 0.07 0.67 6.54 -2.38 -0.02 0.66 16 42 H 0.06 0.77 7.07 -2.39 -0.02 0.75 16 43 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.03 0.95 7.01 -2.39 -0.02 0.94 16 45 H 0.07 1.57 7.07 -2.39 -0.02 1.55 16 46 H 0.09 1.49 6.54 -2.39 -0.02 1.47 16 47 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 49 H 0.37 17.14 3.85 -92.71 -0.36 16.79 16 50 H 0.26 16.38 8.31 -92.71 -0.77 15.60 16 51 H 0.09 2.21 7.86 -2.38 -0.02 2.19 16 52 H 0.04 1.78 6.72 -2.39 -0.02 1.76 16 Total: -1.00 -82.56 393.47 2.82 -79.73 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.47 Total: 26.69 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 6.10 Total: -0.39 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -3.95 Total: -121.88 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -1.70 Total: -33.96 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.90 Total: 49.80 kcal Total: -82.56 2.82 -79.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182150379.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.085 kcal (2) G-P(sol) polarization free energy of solvation -82.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds