Wall clock time and date at job start Tue Mar 31 2020 14:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47213 * 2 1 4 4 H 1.09005 * 109.48383 * 54.97731 * 3 2 1 5 5 O 1.42912 * 109.49001 * 294.95033 * 3 2 1 6 6 C 1.42907 * 114.09447 * 178.85049 * 5 3 2 7 7 C 1.53094 * 109.41334 * 61.15956 * 6 5 3 8 8 C 1.53172 * 109.16672 * 302.39111 * 7 6 5 9 9 C 1.53089 * 109.48286 * 175.00451 * 3 2 1 10 10 H 1.08994 * 109.52648 * 57.63217 * 9 3 2 11 11 C 1.50702 * 109.52284 * 297.50925 * 9 3 2 12 12 O 1.21286 * 119.99567 * 337.33265 * 11 9 3 13 13 N 1.34773 * 120.00539 * 157.33832 * 11 9 3 14 14 C 1.46932 * 120.62641 * 355.03550 * 13 11 9 15 15 C 1.53198 * 108.77201 * 233.58897 * 14 13 11 16 16 C 1.53033 * 109.31119 * 305.36345 * 15 14 13 17 17 C 1.53005 * 109.45802 * 181.38753 * 16 15 14 18 18 N 1.46494 * 109.47205 * 174.97428 * 17 16 15 19 19 C 1.36942 * 120.00026 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00093 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99938 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99639 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00230 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46910 * 90.00128 * 23 21 19 25 25 H 1.48496 * 109.47206 * 210.00112 * 23 21 19 26 26 H 1.48502 * 109.46956 * 330.00484 * 23 21 19 27 27 C 1.53038 * 109.52747 * 61.37944 * 16 15 14 28 28 C 1.46925 * 120.63512 * 175.01754 * 13 11 9 29 29 H 1.08997 * 109.47190 * 59.99605 * 1 2 3 30 30 H 1.08998 * 109.46761 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46796 * 299.99519 * 1 2 3 32 32 H 1.09004 * 109.47156 * 240.00078 * 2 1 3 33 33 H 1.08997 * 109.47190 * 120.00395 * 2 1 3 34 34 H 1.08998 * 109.47573 * 181.14009 * 6 5 3 35 35 H 1.08998 * 109.48152 * 301.16778 * 6 5 3 36 36 H 1.09008 * 109.51946 * 62.29344 * 7 6 5 37 37 H 1.08995 * 109.52100 * 182.47715 * 7 6 5 38 38 H 1.09001 * 109.53566 * 297.11153 * 8 7 6 39 39 H 1.08994 * 109.54509 * 176.84989 * 8 7 6 40 40 H 1.08998 * 109.58257 * 113.80367 * 14 13 11 41 41 H 1.08993 * 109.70422 * 353.44360 * 14 13 11 42 42 H 1.09000 * 109.49008 * 185.41795 * 15 14 13 43 43 H 1.08996 * 109.49699 * 65.32346 * 15 14 13 44 44 H 1.08996 * 109.46539 * 301.35842 * 16 15 14 45 45 H 1.09006 * 109.46873 * 54.97413 * 17 16 15 46 46 H 1.09000 * 109.47139 * 294.97464 * 17 16 15 47 47 H 0.96994 * 120.00259 * 0.02562 * 18 17 16 48 48 H 0.97000 * 119.99765 * 179.97438 * 22 21 19 49 49 H 1.09005 * 109.50094 * 58.57263 * 27 16 15 50 50 H 1.08999 * 109.50065 * 178.66910 * 27 16 15 51 51 H 1.08997 * 109.58785 * 246.20345 * 28 13 11 52 52 H 1.09005 * 109.58286 * 6.48232 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6052 1.9818 0.8415 5 8 1.6632 2.0814 -1.2215 6 6 2.0699 3.4482 -1.3146 7 6 3.5969 3.5308 -1.2416 8 6 4.0734 2.8884 0.0647 9 6 3.5657 1.4445 0.1257 10 1 3.9995 0.8701 -0.6928 11 6 3.9636 0.8260 1.4411 12 8 3.1745 0.7990 2.3617 13 7 5.1962 0.3030 1.5945 14 6 6.1252 0.2302 0.4585 15 6 6.6150 -1.2142 0.3140 16 6 7.2104 -1.6820 1.6438 17 6 7.7321 -3.1125 1.4934 18 7 8.4087 -3.5178 2.7279 19 6 8.9598 -4.7675 2.8281 20 1 8.8959 -5.4541 1.9969 21 6 9.6005 -5.1517 3.9981 22 7 10.1305 -6.3527 4.0941 23 14 9.7117 -3.9640 5.4355 24 1 8.5303 -4.1424 6.3175 25 1 10.9510 -4.2354 6.2071 26 1 9.7418 -2.5700 4.9245 27 6 6.1318 -1.6442 2.7287 28 6 5.6367 -0.2048 2.9009 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.7281 3.8654 -2.2618 35 1 1.6353 4.0137 -0.4903 36 1 4.0313 2.9994 -2.0885 37 1 3.9068 4.5755 -1.2681 38 1 3.6792 3.4497 0.9119 39 1 5.1628 2.8937 0.0974 40 1 6.9753 0.8880 0.6389 41 1 5.6140 0.5357 -0.4544 42 1 7.3774 -1.2636 -0.4635 43 1 5.7773 -1.8571 0.0440 44 1 8.0321 -1.0237 1.9255 45 1 8.4356 -3.1572 0.6620 46 1 6.8968 -3.7854 1.2992 47 1 8.4658 -2.9014 3.4746 48 1 10.5785 -6.6210 4.9115 49 1 5.2986 -2.2832 2.4359 50 1 6.5501 -2.0000 3.6703 51 1 6.4469 0.4176 3.2806 52 1 4.8016 -0.1847 3.6012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205435823.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:48 Heat of formation + Delta-G solvation = -89.255958 kcal Electronic energy + Delta-G solvation = -29135.508325 eV Core-core repulsion = 25327.357829 eV Total energy + Delta-G solvation = -3808.150495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.04454 -39.30080 -37.75706 -35.21548 -34.31567 -34.05870 -32.81188 -31.32353 -30.88784 -30.11526 -27.11732 -25.74459 -24.90760 -23.74060 -23.07464 -21.74777 -21.56880 -21.07096 -20.12567 -19.08005 -17.88900 -17.38884 -16.69502 -16.31735 -15.68246 -15.55925 -14.99191 -14.70464 -14.55362 -14.45515 -14.13416 -14.02134 -13.88903 -13.62208 -13.54860 -13.30931 -13.12160 -12.90315 -12.58246 -12.39368 -12.31165 -12.01972 -11.93082 -11.66907 -11.60397 -11.43861 -11.28752 -11.17892 -11.01985 -10.91416 -10.58713 -10.57204 -10.43464 -10.31584 -10.07541 -9.90750 -9.66850 -9.58497 -8.90663 -8.74565 -7.23762 -5.77759 -3.13117 2.41865 2.77249 3.35465 3.37964 3.43920 3.44882 4.11877 4.25397 4.36547 4.44828 4.56987 4.57877 4.62976 4.81553 4.83312 4.87860 4.92066 5.02284 5.07646 5.09701 5.19665 5.21581 5.27457 5.34146 5.38838 5.41544 5.43711 5.49932 5.53917 5.56500 5.63014 5.70266 5.74059 5.78388 5.79761 5.86234 5.93360 5.97111 5.97862 6.10588 6.15069 6.20903 6.35437 6.50468 6.65552 6.77604 6.89218 7.24270 7.98715 7.99546 8.41426 9.20537 9.92876 10.12694 11.40816 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.002622 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.289026 B =10678.324988 C =10876.975893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C 0.111 3.889 4 H 0.071 0.929 5 O -0.374 6.374 6 C 0.058 3.942 7 C -0.154 4.154 8 C -0.111 4.111 9 C -0.141 4.141 10 H 0.103 0.897 11 C 0.524 3.476 12 O -0.541 6.541 13 N -0.605 5.605 14 C 0.104 3.896 15 C -0.127 4.127 16 C -0.098 4.098 17 C 0.163 3.837 18 N -0.755 5.755 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.125 4.125 28 C 0.109 3.891 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.027 0.973 46 H 0.026 0.974 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.068 0.932 50 H 0.080 0.920 51 H 0.066 0.934 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.598 22.697 -12.373 30.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C 0.053 3.947 4 H 0.088 0.912 5 O -0.293 6.293 6 C -0.019 4.019 7 C -0.191 4.191 8 C -0.149 4.149 9 C -0.162 4.162 10 H 0.121 0.879 11 C 0.312 3.688 12 O -0.419 6.419 13 N -0.339 5.339 14 C -0.018 4.018 15 C -0.166 4.166 16 C -0.117 4.117 17 C 0.036 3.964 18 N -0.401 5.401 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.164 4.164 28 C -0.013 4.013 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.044 0.956 46 H 0.044 0.956 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.086 0.914 50 H 0.098 0.902 51 H 0.084 0.916 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.043 22.345 -12.079 30.043 hybrid contribution 0.641 0.816 1.278 1.647 sum -15.402 23.161 -10.801 29.838 Atomic orbital electron populations 1.21666 0.95005 1.01597 1.02022 1.21598 0.97134 0.93868 1.02984 1.21908 0.90624 0.94999 0.87183 0.91152 1.87959 1.78217 1.24454 1.38645 1.22589 0.93652 0.83455 1.02188 1.22195 0.97172 1.01763 0.97998 1.21534 1.01469 0.93293 0.98591 1.22051 0.99176 0.98193 0.96829 0.87919 1.20331 0.81228 0.77756 0.89488 1.90692 1.50258 1.58173 1.42767 1.48150 1.14027 1.60378 1.11311 1.21872 0.93106 0.98052 0.88809 1.21909 1.01234 0.95120 0.98291 1.21361 0.97358 0.98695 0.94281 1.20641 0.94797 0.91210 0.89770 1.42724 1.68458 1.15479 1.13465 1.19063 1.28099 0.89647 1.00535 0.89276 1.24678 1.00402 0.96416 0.97731 1.69702 1.42460 1.18486 1.27619 0.86558 0.77456 0.80968 0.83612 1.21014 1.21720 1.20372 1.21929 0.98862 0.95170 1.00399 1.21712 1.00187 0.95017 0.84353 0.92148 0.92717 0.92854 0.91403 0.89924 0.88701 0.93141 0.90652 0.90378 0.91107 0.90728 0.91175 0.89732 0.90302 0.91233 0.91046 0.95558 0.95565 0.80690 0.93062 0.91353 0.90153 0.91586 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.81 37.16 0.36 -1.01 16 2 C -0.12 -1.22 5.46 -26.73 -0.15 -1.37 16 3 C 0.11 1.11 1.79 -26.69 -0.05 1.06 16 4 H 0.07 0.79 7.80 -51.93 -0.40 0.39 16 5 O -0.37 -3.57 9.95 -35.23 -0.35 -3.92 16 6 C 0.06 0.39 6.84 37.21 0.25 0.65 16 7 C -0.15 -0.90 6.14 -26.59 -0.16 -1.06 16 8 C -0.11 -0.82 5.29 -26.55 -0.14 -0.96 16 9 C -0.14 -1.29 1.43 -91.63 -0.13 -1.42 16 10 H 0.10 0.85 6.16 -51.93 -0.32 0.53 16 11 C 0.52 6.23 6.03 -10.99 -0.07 6.16 16 12 O -0.54 -8.21 14.47 5.55 0.08 -8.13 16 13 N -0.61 -6.77 2.97 -172.76 -0.51 -7.28 16 14 C 0.10 0.93 6.11 -3.70 -0.02 0.91 16 15 C -0.13 -1.35 5.36 -26.61 -0.14 -1.49 16 16 C -0.10 -1.37 2.19 -90.58 -0.20 -1.57 16 17 C 0.16 3.03 5.65 -4.04 -0.02 3.00 16 18 N -0.76 -17.66 5.12 -59.91 -0.31 -17.97 16 19 C -0.24 -6.90 10.47 -15.06 -0.16 -7.05 16 20 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 22 N -0.93 -29.47 13.97 55.49 0.78 -28.70 16 23 Si 0.88 22.04 27.73 -169.99 -4.71 17.33 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.45 6.52 56.52 0.37 -6.09 16 27 C -0.13 -1.77 5.25 -26.61 -0.14 -1.91 16 28 C 0.11 1.36 6.44 -3.71 -0.02 1.34 16 29 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.99 6.48 -51.93 -0.34 0.65 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.49 7.94 -51.93 -0.41 0.08 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.59 5.43 -51.93 -0.28 0.31 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.36 8.18 4.71 -40.82 -0.19 7.98 16 48 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 49 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 50 H 0.08 1.27 7.15 -51.93 -0.37 0.90 16 51 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.09 1.24 7.00 -51.93 -0.36 0.87 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -33.16 391.82 -9.45 -42.61 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -9.44 Total: 4.88 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -0.88 Total: -4.72 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.05 Total: -53.95 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.27 Total: -12.05 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.16 -9.45 -42.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205435823.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.651 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds