Wall clock time and date at job start Tue Mar 31 2020 14:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47213 * 2 1 4 4 H 1.09005 * 109.48383 * 54.97731 * 3 2 1 5 5 O 1.42912 * 109.49001 * 294.95033 * 3 2 1 6 6 C 1.42907 * 114.09447 * 178.85049 * 5 3 2 7 7 C 1.53094 * 109.41334 * 61.15956 * 6 5 3 8 8 C 1.53172 * 109.16672 * 302.39111 * 7 6 5 9 9 C 1.53089 * 109.48286 * 175.00451 * 3 2 1 10 10 H 1.08994 * 109.52648 * 57.63217 * 9 3 2 11 11 C 1.50702 * 109.52284 * 297.50925 * 9 3 2 12 12 O 1.21286 * 119.99567 * 337.33265 * 11 9 3 13 13 N 1.34773 * 120.00539 * 157.33832 * 11 9 3 14 14 C 1.46932 * 120.62641 * 355.03550 * 13 11 9 15 15 C 1.53198 * 108.77201 * 233.58897 * 14 13 11 16 16 C 1.53033 * 109.31119 * 305.36345 * 15 14 13 17 17 C 1.53005 * 109.45802 * 181.38753 * 16 15 14 18 18 N 1.46494 * 109.47205 * 174.97428 * 17 16 15 19 19 C 1.36942 * 120.00026 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00093 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99938 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99639 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00230 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46910 * 90.00128 * 23 21 19 25 25 H 1.48496 * 109.47206 * 210.00112 * 23 21 19 26 26 H 1.48502 * 109.46956 * 330.00484 * 23 21 19 27 27 C 1.53038 * 109.52747 * 61.37944 * 16 15 14 28 28 C 1.46925 * 120.63512 * 175.01754 * 13 11 9 29 29 H 1.08997 * 109.47190 * 59.99605 * 1 2 3 30 30 H 1.08998 * 109.46761 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46796 * 299.99519 * 1 2 3 32 32 H 1.09004 * 109.47156 * 240.00078 * 2 1 3 33 33 H 1.08997 * 109.47190 * 120.00395 * 2 1 3 34 34 H 1.08998 * 109.47573 * 181.14009 * 6 5 3 35 35 H 1.08998 * 109.48152 * 301.16778 * 6 5 3 36 36 H 1.09008 * 109.51946 * 62.29344 * 7 6 5 37 37 H 1.08995 * 109.52100 * 182.47715 * 7 6 5 38 38 H 1.09001 * 109.53566 * 297.11153 * 8 7 6 39 39 H 1.08994 * 109.54509 * 176.84989 * 8 7 6 40 40 H 1.08998 * 109.58257 * 113.80367 * 14 13 11 41 41 H 1.08993 * 109.70422 * 353.44360 * 14 13 11 42 42 H 1.09000 * 109.49008 * 185.41795 * 15 14 13 43 43 H 1.08996 * 109.49699 * 65.32346 * 15 14 13 44 44 H 1.08996 * 109.46539 * 301.35842 * 16 15 14 45 45 H 1.09006 * 109.46873 * 54.97413 * 17 16 15 46 46 H 1.09000 * 109.47139 * 294.97464 * 17 16 15 47 47 H 0.96994 * 120.00259 * 0.02562 * 18 17 16 48 48 H 0.97000 * 119.99765 * 179.97438 * 22 21 19 49 49 H 1.09005 * 109.50094 * 58.57263 * 27 16 15 50 50 H 1.08999 * 109.50065 * 178.66910 * 27 16 15 51 51 H 1.08997 * 109.58785 * 246.20345 * 28 13 11 52 52 H 1.09005 * 109.58286 * 6.48232 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6052 1.9818 0.8415 5 8 1.6632 2.0814 -1.2215 6 6 2.0699 3.4482 -1.3146 7 6 3.5969 3.5308 -1.2416 8 6 4.0734 2.8884 0.0647 9 6 3.5657 1.4445 0.1257 10 1 3.9995 0.8701 -0.6928 11 6 3.9636 0.8260 1.4411 12 8 3.1745 0.7990 2.3617 13 7 5.1962 0.3030 1.5945 14 6 6.1252 0.2302 0.4585 15 6 6.6150 -1.2142 0.3140 16 6 7.2104 -1.6820 1.6438 17 6 7.7321 -3.1125 1.4934 18 7 8.4087 -3.5178 2.7279 19 6 8.9598 -4.7675 2.8281 20 1 8.8959 -5.4541 1.9969 21 6 9.6005 -5.1517 3.9981 22 7 10.1305 -6.3527 4.0941 23 14 9.7117 -3.9640 5.4355 24 1 8.5303 -4.1424 6.3175 25 1 10.9510 -4.2354 6.2071 26 1 9.7418 -2.5700 4.9245 27 6 6.1318 -1.6442 2.7287 28 6 5.6367 -0.2048 2.9009 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.7281 3.8654 -2.2618 35 1 1.6353 4.0137 -0.4903 36 1 4.0313 2.9994 -2.0885 37 1 3.9068 4.5755 -1.2681 38 1 3.6792 3.4497 0.9119 39 1 5.1628 2.8937 0.0974 40 1 6.9753 0.8880 0.6389 41 1 5.6140 0.5357 -0.4544 42 1 7.3774 -1.2636 -0.4635 43 1 5.7773 -1.8571 0.0440 44 1 8.0321 -1.0237 1.9255 45 1 8.4356 -3.1572 0.6620 46 1 6.8968 -3.7854 1.2992 47 1 8.4658 -2.9014 3.4746 48 1 10.5785 -6.6210 4.9115 49 1 5.2986 -2.2832 2.4359 50 1 6.5501 -2.0000 3.6703 51 1 6.4469 0.4176 3.2806 52 1 4.8016 -0.1847 3.6012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205435823.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:47 Heat of formation + Delta-G solvation = -110.138124 kcal Electronic energy + Delta-G solvation = -29136.413843 eV Core-core repulsion = 25327.357829 eV Total energy + Delta-G solvation = -3809.056014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.87481 -40.11330 -38.81530 -36.72928 -35.07175 -34.85239 -34.31597 -32.69674 -32.21115 -30.88462 -28.51403 -26.37410 -25.87659 -25.12224 -24.02276 -23.19127 -22.39090 -21.92807 -21.11032 -20.04673 -19.61796 -18.48109 -17.42522 -17.12265 -16.65472 -16.45911 -16.35265 -15.95925 -15.72164 -15.43900 -15.19736 -15.09684 -14.81905 -14.70366 -14.41970 -14.26623 -14.21699 -14.05517 -13.86171 -13.58317 -13.32719 -13.05236 -13.02238 -12.81383 -12.69217 -12.36547 -12.27171 -12.19981 -12.10467 -11.92015 -11.83971 -11.79174 -11.68567 -11.48270 -11.40984 -11.21324 -10.98035 -10.71614 -10.39742 -9.68014 -9.29909 -8.04162 -5.37297 1.35579 1.39903 1.47012 1.53060 1.91596 2.46982 2.78828 3.27365 3.39567 3.52047 3.58007 3.70924 3.80133 3.82387 3.95138 3.99206 4.07787 4.12454 4.17283 4.20205 4.26910 4.33941 4.42965 4.46633 4.54563 4.57756 4.70099 4.71972 4.73365 4.82625 4.85236 4.87922 4.88722 4.93391 4.96373 5.01536 5.06349 5.07471 5.07981 5.12739 5.20167 5.25400 5.31641 5.36545 5.49621 5.53841 5.74685 6.20208 6.24406 6.37974 7.07232 7.10224 7.83849 8.02881 9.17610 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022940 B = 0.002622 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.289026 B =10678.324988 C =10876.975893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C 0.115 3.885 4 H 0.051 0.949 5 O -0.385 6.385 6 C 0.048 3.952 7 C -0.146 4.146 8 C -0.109 4.109 9 C -0.134 4.134 10 H 0.118 0.882 11 C 0.521 3.479 12 O -0.581 6.581 13 N -0.605 5.605 14 C 0.105 3.895 15 C -0.122 4.122 16 C -0.087 4.087 17 C 0.159 3.841 18 N -0.757 5.757 19 C -0.235 4.235 20 H 0.054 0.946 21 C -0.066 4.066 22 N -0.985 5.985 23 Si 0.955 3.045 24 H -0.280 1.280 25 H -0.295 1.295 26 H -0.247 1.247 27 C -0.121 4.121 28 C 0.116 3.884 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.113 0.887 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.029 0.971 46 H 0.015 0.985 47 H 0.366 0.634 48 H 0.258 0.742 49 H 0.053 0.947 50 H 0.062 0.938 51 H 0.082 0.918 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.430 26.021 -13.782 33.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C 0.057 3.943 4 H 0.069 0.931 5 O -0.304 6.304 6 C -0.028 4.028 7 C -0.184 4.184 8 C -0.147 4.147 9 C -0.155 4.155 10 H 0.136 0.864 11 C 0.311 3.689 12 O -0.462 6.462 13 N -0.337 5.337 14 C -0.016 4.016 15 C -0.160 4.160 16 C -0.106 4.106 17 C 0.033 3.967 18 N -0.403 5.403 19 C -0.366 4.366 20 H 0.072 0.928 21 C -0.257 4.257 22 N -0.636 5.636 23 Si 0.781 3.219 24 H -0.206 1.206 25 H -0.222 1.222 26 H -0.172 1.172 27 C -0.159 4.159 28 C -0.007 4.007 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.047 0.953 46 H 0.033 0.967 47 H 0.200 0.800 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.100 0.900 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.888 25.716 -13.542 33.123 hybrid contribution 0.529 -0.286 1.619 1.727 sum -15.359 25.431 -11.923 32.012 Atomic orbital electron populations 1.21640 0.94566 1.01925 1.01872 1.21564 0.97625 0.94285 1.02161 1.21730 0.91252 0.94409 0.86918 0.93139 1.87940 1.78636 1.25901 1.37945 1.22845 0.94741 0.82079 1.03139 1.22172 0.96081 1.02930 0.97196 1.21574 1.02301 0.91723 0.99126 1.22040 0.98547 0.99509 0.95392 0.86379 1.20835 0.80855 0.77246 0.90006 1.90677 1.51424 1.59729 1.44341 1.48232 1.14275 1.59759 1.11448 1.22070 0.93557 0.97033 0.88959 1.21882 1.01408 0.96176 0.96539 1.21268 0.97476 0.95561 0.96293 1.20835 0.94018 0.94052 0.87806 1.42733 1.68355 1.13837 1.15385 1.19049 1.27252 0.90974 0.99311 0.92778 1.25539 1.00741 0.98399 1.01049 1.69891 1.44184 1.20978 1.28524 0.85415 0.77048 0.79958 0.79436 1.20603 1.22194 1.17152 1.21839 0.98358 0.96153 0.99589 1.21543 0.99986 0.94079 0.85088 0.91749 0.92177 0.93471 0.90744 0.92038 0.86883 0.93307 0.89798 0.88420 0.92295 0.89193 0.89093 0.87105 0.88388 0.91844 0.90181 0.95344 0.96654 0.80027 0.93341 0.92832 0.91965 0.90000 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.81 71.98 0.71 -1.96 16 2 C -0.12 -2.42 5.46 30.59 0.17 -2.25 16 3 C 0.12 2.20 1.79 30.62 0.05 2.26 16 4 H 0.05 1.16 7.80 -2.38 -0.02 1.14 16 5 O -0.39 -6.66 9.95 -148.98 -1.48 -8.14 16 6 C 0.05 0.54 6.84 72.01 0.49 1.03 16 7 C -0.15 -1.19 6.14 30.68 0.19 -1.00 16 8 C -0.11 -1.28 5.29 30.71 0.16 -1.12 16 9 C -0.13 -2.15 1.43 -11.45 -0.02 -2.17 16 10 H 0.12 1.54 6.16 -2.39 -0.01 1.52 16 11 C 0.52 11.71 6.03 87.66 0.53 12.23 16 12 O -0.58 -17.76 14.47 -3.05 -0.04 -17.81 16 13 N -0.60 -12.15 2.97 -818.89 -2.43 -14.58 16 14 C 0.11 1.45 6.11 86.36 0.53 1.98 16 15 C -0.12 -2.20 5.36 30.67 0.16 -2.04 16 16 C -0.09 -2.25 2.19 -10.77 -0.02 -2.27 16 17 C 0.16 5.77 5.65 86.38 0.49 6.25 16 18 N -0.76 -34.93 5.12 -343.44 -1.76 -36.69 16 19 C -0.23 -13.51 10.47 84.03 0.88 -12.63 16 20 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 21 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 22 N -0.99 -63.78 13.97 21.65 0.30 -63.48 16 23 Si 0.95 45.44 27.73 68.60 1.90 47.35 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.25 -10.41 6.52 99.48 0.65 -9.76 16 27 C -0.12 -3.30 5.25 30.67 0.16 -3.14 16 28 C 0.12 2.72 6.44 86.36 0.56 3.27 16 29 H 0.06 1.14 7.82 -2.39 -0.02 1.12 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.51 6.48 -2.39 -0.02 1.50 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 0.80 7.94 -2.39 -0.02 0.78 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 41 H 0.11 1.01 5.43 -2.39 -0.01 1.00 16 42 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.37 15.97 4.71 -92.71 -0.44 15.54 16 48 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 49 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 50 H 0.06 1.92 7.15 -2.39 -0.02 1.90 16 51 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.07 2.03 7.00 -2.38 -0.02 2.01 16 Total: -1.00 -74.47 391.82 2.38 -72.09 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.39 Total: 26.26 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.50 Total: -5.01 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -3.89 Total: -114.74 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -1.53 Total: -25.95 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.35 kcal Total: -74.47 2.38 -72.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205435823.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.044 kcal (2) G-P(sol) polarization free energy of solvation -74.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds