Wall clock time and date at job start Tue Mar 31 2020 15:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47041 * 2 1 4 4 H 1.09005 * 109.46863 * 177.96621 * 3 2 1 5 5 C 1.50707 * 109.47118 * 57.96881 * 3 2 1 6 6 H 1.08000 * 119.99573 * 239.99383 * 5 3 2 7 7 C 1.37872 * 119.99926 * 59.99843 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99889 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47302 * 59.99672 * 9 7 5 11 11 H 1.48496 * 109.47247 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46987 * 299.99502 * 9 7 5 13 13 N 1.46902 * 109.47436 * 297.96473 * 3 2 1 14 14 C 1.46894 * 111.00291 * 273.75217 * 13 3 2 15 15 C 1.52997 * 109.47460 * 174.97972 * 14 13 3 16 16 H 1.08998 * 115.51070 * 330.41398 * 15 14 13 17 17 C 1.52997 * 117.44694 * 185.00361 * 15 14 13 18 18 H 1.09001 * 119.53979 * 5.70747 * 17 15 14 19 19 C 1.54382 * 118.12602 * 160.80861 * 17 15 14 20 20 N 1.48150 * 104.61880 * 39.45262 * 19 17 15 21 21 C 1.34775 * 127.84242 * 219.56456 * 20 19 17 22 22 O 1.21507 * 119.99681 * 0.02562 * 21 20 19 23 23 O 1.34632 * 119.99984 * 180.02562 * 21 20 19 24 24 C 1.45200 * 116.99615 * 180.02562 * 23 21 20 25 25 C 1.52994 * 109.47417 * 60.00155 * 24 23 21 26 26 C 1.53002 * 109.47105 * 180.02562 * 24 23 21 27 27 C 1.53001 * 109.47208 * 299.99524 * 24 23 21 28 28 C 1.48148 * 104.31989 * 39.59010 * 20 19 17 29 29 C 1.52998 * 117.44393 * 115.75902 * 15 14 13 30 30 H 1.08994 * 119.53850 * 355.88118 * 29 15 14 31 31 H 1.09006 * 109.46773 * 294.44853 * 1 2 3 32 32 H 1.09003 * 109.46875 * 54.44812 * 1 2 3 33 33 H 1.08994 * 109.47304 * 174.44943 * 1 2 3 34 34 H 1.08998 * 109.47083 * 239.99923 * 2 1 3 35 35 H 1.09003 * 109.47326 * 120.00372 * 2 1 3 36 36 H 0.96998 * 119.99996 * 180.02562 * 8 7 5 37 37 H 1.00898 * 110.99877 * 149.79688 * 13 3 2 38 38 H 1.09004 * 109.46915 * 54.97582 * 14 13 3 39 39 H 1.09005 * 109.46985 * 294.98062 * 14 13 3 40 40 H 1.08998 * 110.41104 * 158.24155 * 19 17 15 41 41 H 1.09000 * 110.40911 * 280.67199 * 19 17 15 42 42 H 1.09003 * 109.47242 * 59.99816 * 25 24 23 43 43 H 1.09000 * 109.47416 * 180.02562 * 25 24 23 44 44 H 1.09004 * 109.46846 * 299.99686 * 25 24 23 45 45 H 1.09005 * 109.47628 * 59.99575 * 26 24 23 46 46 H 1.09003 * 109.47578 * 180.02562 * 26 24 23 47 47 H 1.09003 * 109.46745 * 299.99688 * 26 24 23 48 48 H 1.09004 * 109.46959 * 60.00373 * 27 24 23 49 49 H 1.09000 * 109.47239 * 179.97438 * 27 24 23 50 50 H 1.08993 * 109.47461 * 300.00490 * 27 24 23 51 51 H 1.09006 * 110.40463 * 201.63124 * 28 20 19 52 52 H 1.08994 * 110.41253 * 79.19435 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4426 0.0365 5 6 1.4969 2.1673 1.2046 6 1 0.8799 3.0441 1.0743 7 6 1.7879 1.7111 2.4727 8 7 2.5397 0.6437 2.6312 9 14 1.1141 2.6091 3.9657 10 1 -0.3700 2.6083 3.9158 11 1 1.5688 1.9240 5.2023 12 1 1.6087 4.0093 3.9660 13 7 1.5909 2.1207 -1.2233 14 6 2.5281 1.8858 -2.3298 15 6 1.9660 2.5001 -3.6133 16 1 0.8786 2.5368 -3.6792 17 6 2.7431 2.2598 -4.9092 18 1 3.6054 1.5932 -4.9030 19 6 2.0032 2.4603 -6.2493 20 7 1.1575 3.6575 -6.0340 21 6 -0.1034 3.8669 -6.4616 22 8 -0.6759 3.0113 -7.1070 23 8 -0.7284 5.0240 -6.1737 24 6 -2.0854 5.1804 -6.6660 25 6 -2.9706 4.0783 -6.0805 26 6 -2.6267 6.5478 -6.2440 27 6 -2.0888 5.0802 -8.1927 28 6 2.0124 4.5726 -5.2425 29 6 2.7492 3.6525 -4.2453 30 1 3.6315 4.0439 -3.7390 31 1 -0.3633 0.4254 0.9356 32 1 -0.3633 0.5975 -0.8361 33 1 -0.3633 -1.0228 -0.0994 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.7441 0.3226 3.5234 37 1 1.4616 3.1083 -1.0624 38 1 2.6639 0.8133 -2.4694 39 1 3.4882 2.3463 -2.0967 40 1 2.7163 2.6385 -7.0542 41 1 1.3832 1.5926 -6.4747 42 1 -2.9682 4.1497 -4.9929 43 1 -3.9892 4.1954 -6.4505 44 1 -2.5848 3.1042 -6.3816 45 1 -1.9960 7.3329 -6.6614 46 1 -3.6456 6.6651 -6.6132 47 1 -2.6242 6.6197 -5.1564 48 1 -1.7031 4.1061 -8.4937 49 1 -3.1076 5.1971 -8.5623 50 1 -1.4583 5.8653 -8.6098 51 1 1.3993 5.2985 -4.7082 52 1 2.7269 5.0806 -5.8900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255151521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:24 Heat of formation + Delta-G solvation = -47.551814 kcal Electronic energy + Delta-G solvation = -28626.679384 eV Core-core repulsion = 24820.337316 eV Total energy + Delta-G solvation = -3806.342068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.03722 -39.73369 -36.98240 -36.18817 -34.43667 -33.65930 -32.12604 -30.52003 -28.70024 -27.65149 -27.58076 -27.52724 -25.92269 -23.75544 -22.99270 -21.99944 -20.43332 -20.03975 -19.28323 -18.95780 -18.00354 -16.76137 -16.65943 -16.27639 -15.38257 -15.07994 -14.90609 -14.45059 -14.37197 -14.19750 -13.81931 -13.60198 -13.50119 -13.11248 -12.86531 -12.68329 -12.44757 -12.38210 -12.32921 -12.07485 -12.02526 -11.97713 -11.74087 -11.61685 -11.49408 -11.44821 -11.12633 -10.90016 -10.73930 -10.51087 -10.38318 -10.14596 -10.11497 -9.85506 -9.65087 -9.60320 -9.33250 -8.97033 -8.77197 -8.46545 -7.23492 -6.01705 -4.07034 1.91632 2.75797 3.30622 3.35510 3.38143 3.55720 3.72196 4.22371 4.41710 4.53002 4.57684 4.65652 4.71872 4.91527 4.95029 5.23850 5.26653 5.29181 5.31489 5.35853 5.40315 5.48117 5.49184 5.52766 5.59881 5.65644 5.69040 5.75307 5.75841 5.81305 5.84379 6.07807 6.09944 6.13970 6.20386 6.29778 6.34980 6.55591 6.57860 6.73642 6.87734 7.25866 7.32626 7.39094 7.51727 7.75187 7.80493 7.85493 8.23139 8.26967 8.40039 8.67958 9.02197 9.57701 11.04351 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.002795 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.079357 B =10015.469260 C =10879.873672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.217 3.783 4 H -0.001 1.001 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.684 5.684 14 C 0.093 3.907 15 C -0.090 4.090 16 H 0.106 0.894 17 C -0.183 4.183 18 H 0.128 0.872 19 C 0.154 3.846 20 N -0.611 5.611 21 C 0.678 3.322 22 O -0.569 6.569 23 O -0.360 6.360 24 C 0.136 3.864 25 C -0.185 4.185 26 C -0.141 4.141 27 C -0.182 4.182 28 C 0.134 3.866 29 C -0.181 4.181 30 H 0.126 0.874 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.012 0.988 34 H 0.009 0.991 35 H 0.085 0.915 36 H 0.261 0.739 37 H 0.331 0.669 38 H 0.070 0.930 39 H 0.021 0.979 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.087 0.913 49 H 0.069 0.931 50 H 0.058 0.942 51 H 0.086 0.914 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 9.132 -20.025 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.017 0.983 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.315 5.315 14 C -0.037 4.037 15 C -0.109 4.109 16 H 0.124 0.876 17 C -0.203 4.203 18 H 0.146 0.854 19 C 0.033 3.967 20 N -0.352 5.352 21 C 0.434 3.566 22 O -0.458 6.458 23 O -0.275 6.275 24 C 0.100 3.900 25 C -0.242 4.242 26 C -0.198 4.198 27 C -0.240 4.240 28 C 0.011 3.989 29 C -0.200 4.200 30 H 0.144 0.856 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.028 0.972 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.148 0.852 38 H 0.088 0.912 39 H 0.039 0.961 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.088 0.912 50 H 0.077 0.923 51 H 0.105 0.895 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.069 8.305 -20.316 22.322 hybrid contribution 0.499 0.992 1.124 1.580 sum -3.570 9.297 -19.193 21.622 Atomic orbital electron populations 1.21434 0.97511 0.97119 1.01543 1.21422 0.95108 0.98229 0.99241 1.19100 0.93195 0.91617 0.85111 0.98300 1.21152 1.31674 1.11969 0.90381 0.92374 1.24878 0.95080 0.95018 0.98834 1.69879 1.37358 1.23096 1.22476 0.86644 0.79476 0.79724 0.82065 1.20198 1.21364 1.20389 1.60614 1.47317 1.16218 1.07325 1.21395 0.93301 0.99608 0.89430 1.22436 0.99069 0.97390 0.92013 0.87571 1.23645 1.03749 1.00776 0.92081 0.85394 1.21769 0.92067 0.87039 0.95819 1.47421 1.10798 1.20615 1.56395 1.17287 0.80314 0.80955 0.78093 1.90897 1.65025 1.45849 1.44034 1.86308 1.30434 1.37074 1.73691 1.22077 0.77195 0.96705 0.94062 1.22525 0.99588 1.00489 1.01589 1.21861 1.00966 0.94043 1.02910 1.22515 1.02903 1.04509 0.94040 1.21877 0.93009 0.92210 0.91795 1.23787 1.03455 0.90155 1.02573 0.85648 0.92992 0.93467 0.96893 0.97191 0.89716 0.92917 0.85179 0.91185 0.96063 0.90175 0.89380 0.91811 0.91201 0.89379 0.91581 0.90159 0.91247 0.89443 0.91167 0.92321 0.89520 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.46 37.16 0.35 -2.36 16 2 C -0.10 -2.46 5.58 -26.73 -0.15 -2.61 16 3 C 0.22 5.32 2.30 -68.86 -0.16 5.16 16 4 H 0.00 -0.02 7.84 -51.93 -0.41 -0.42 16 5 C -0.51 -13.64 7.34 -34.44 -0.25 -13.89 16 6 H 0.06 1.53 7.60 -52.49 -0.40 1.14 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.01 11.34 55.43 0.63 -24.38 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 13 N -0.68 -14.07 5.51 -107.95 -0.59 -14.67 16 14 C 0.09 1.58 5.73 -3.83 -0.02 1.56 16 15 C -0.09 -1.28 5.34 -90.62 -0.48 -1.77 16 16 H 0.11 1.76 8.00 -51.93 -0.42 1.34 16 17 C -0.18 -2.05 6.90 -89.22 -0.62 -2.67 16 18 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 19 C 0.15 1.68 6.95 -2.41 -0.02 1.67 16 20 N -0.61 -7.54 2.90 -175.08 -0.51 -8.05 16 21 C 0.68 9.53 8.01 54.05 0.43 9.96 16 22 O -0.57 -8.99 12.15 -19.28 -0.23 -9.22 16 23 O -0.36 -4.65 9.41 -40.30 -0.38 -5.03 16 24 C 0.14 1.45 1.13 -90.62 -0.10 1.35 16 25 C -0.18 -2.04 8.37 37.15 0.31 -1.73 16 26 C -0.14 -1.12 8.85 37.16 0.33 -0.80 16 27 C -0.18 -1.78 8.37 37.16 0.31 -1.47 16 28 C 0.13 1.40 6.97 -2.41 -0.02 1.39 16 29 C -0.18 -2.04 6.79 -89.22 -0.61 -2.65 16 30 H 0.13 1.32 8.12 -51.93 -0.42 0.90 16 31 H 0.05 1.27 7.37 -51.93 -0.38 0.89 16 32 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.01 0.22 7.43 -51.93 -0.39 -0.17 16 35 H 0.08 2.28 6.13 -51.93 -0.32 1.96 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.33 6.75 8.25 -39.29 -0.32 6.42 16 38 H 0.07 1.25 7.40 -51.93 -0.38 0.87 16 39 H 0.02 0.36 7.94 -51.93 -0.41 -0.05 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.05 7.88 -51.93 -0.41 0.64 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.19 5.88 -51.93 -0.31 0.88 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.09 1.05 5.88 -51.93 -0.31 0.75 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.09 0.94 7.87 -51.93 -0.41 0.53 16 52 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 404.53 15.07 6.10 6.10 Total: -1.00 -29.47 404.53 -10.25 -39.72 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -9.45 Total: 6.74 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -0.78 Total: -7.23 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.47 Total: -47.10 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.61 Total: -14.25 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.47 -10.25 -39.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.829 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds