Wall clock time and date at job start Tue Mar 31 2020 15:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47041 * 2 1 4 4 H 1.09005 * 109.46863 * 177.96621 * 3 2 1 5 5 C 1.50707 * 109.47118 * 57.96881 * 3 2 1 6 6 H 1.08000 * 119.99573 * 239.99383 * 5 3 2 7 7 C 1.37872 * 119.99926 * 59.99843 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99889 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47302 * 59.99672 * 9 7 5 11 11 H 1.48496 * 109.47247 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46987 * 299.99502 * 9 7 5 13 13 N 1.46902 * 109.47436 * 297.96473 * 3 2 1 14 14 C 1.46894 * 111.00291 * 273.75217 * 13 3 2 15 15 C 1.52997 * 109.47460 * 174.97972 * 14 13 3 16 16 H 1.08998 * 115.51070 * 330.41398 * 15 14 13 17 17 C 1.52997 * 117.44694 * 185.00361 * 15 14 13 18 18 H 1.09001 * 119.53979 * 5.70747 * 17 15 14 19 19 C 1.54382 * 118.12602 * 160.80861 * 17 15 14 20 20 N 1.48150 * 104.61880 * 39.45262 * 19 17 15 21 21 C 1.34775 * 127.84242 * 219.56456 * 20 19 17 22 22 O 1.21507 * 119.99681 * 0.02562 * 21 20 19 23 23 O 1.34632 * 119.99984 * 180.02562 * 21 20 19 24 24 C 1.45200 * 116.99615 * 180.02562 * 23 21 20 25 25 C 1.52994 * 109.47417 * 60.00155 * 24 23 21 26 26 C 1.53002 * 109.47105 * 180.02562 * 24 23 21 27 27 C 1.53001 * 109.47208 * 299.99524 * 24 23 21 28 28 C 1.48148 * 104.31989 * 39.59010 * 20 19 17 29 29 C 1.52998 * 117.44393 * 115.75902 * 15 14 13 30 30 H 1.08994 * 119.53850 * 355.88118 * 29 15 14 31 31 H 1.09006 * 109.46773 * 294.44853 * 1 2 3 32 32 H 1.09003 * 109.46875 * 54.44812 * 1 2 3 33 33 H 1.08994 * 109.47304 * 174.44943 * 1 2 3 34 34 H 1.08998 * 109.47083 * 239.99923 * 2 1 3 35 35 H 1.09003 * 109.47326 * 120.00372 * 2 1 3 36 36 H 0.96998 * 119.99996 * 180.02562 * 8 7 5 37 37 H 1.00898 * 110.99877 * 149.79688 * 13 3 2 38 38 H 1.09004 * 109.46915 * 54.97582 * 14 13 3 39 39 H 1.09005 * 109.46985 * 294.98062 * 14 13 3 40 40 H 1.08998 * 110.41104 * 158.24155 * 19 17 15 41 41 H 1.09000 * 110.40911 * 280.67199 * 19 17 15 42 42 H 1.09003 * 109.47242 * 59.99816 * 25 24 23 43 43 H 1.09000 * 109.47416 * 180.02562 * 25 24 23 44 44 H 1.09004 * 109.46846 * 299.99686 * 25 24 23 45 45 H 1.09005 * 109.47628 * 59.99575 * 26 24 23 46 46 H 1.09003 * 109.47578 * 180.02562 * 26 24 23 47 47 H 1.09003 * 109.46745 * 299.99688 * 26 24 23 48 48 H 1.09004 * 109.46959 * 60.00373 * 27 24 23 49 49 H 1.09000 * 109.47239 * 179.97438 * 27 24 23 50 50 H 1.08993 * 109.47461 * 300.00490 * 27 24 23 51 51 H 1.09006 * 110.40463 * 201.63124 * 28 20 19 52 52 H 1.08994 * 110.41253 * 79.19435 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4426 0.0365 5 6 1.4969 2.1673 1.2046 6 1 0.8799 3.0441 1.0743 7 6 1.7879 1.7111 2.4727 8 7 2.5397 0.6437 2.6312 9 14 1.1141 2.6091 3.9657 10 1 -0.3700 2.6083 3.9158 11 1 1.5688 1.9240 5.2023 12 1 1.6087 4.0093 3.9660 13 7 1.5909 2.1207 -1.2233 14 6 2.5281 1.8858 -2.3298 15 6 1.9660 2.5001 -3.6133 16 1 0.8786 2.5368 -3.6792 17 6 2.7431 2.2598 -4.9092 18 1 3.6054 1.5932 -4.9030 19 6 2.0032 2.4603 -6.2493 20 7 1.1575 3.6575 -6.0340 21 6 -0.1034 3.8669 -6.4616 22 8 -0.6759 3.0113 -7.1070 23 8 -0.7284 5.0240 -6.1737 24 6 -2.0854 5.1804 -6.6660 25 6 -2.9706 4.0783 -6.0805 26 6 -2.6267 6.5478 -6.2440 27 6 -2.0888 5.0802 -8.1927 28 6 2.0124 4.5726 -5.2425 29 6 2.7492 3.6525 -4.2453 30 1 3.6315 4.0439 -3.7390 31 1 -0.3633 0.4254 0.9356 32 1 -0.3633 0.5975 -0.8361 33 1 -0.3633 -1.0228 -0.0994 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.7441 0.3226 3.5234 37 1 1.4616 3.1083 -1.0624 38 1 2.6639 0.8133 -2.4694 39 1 3.4882 2.3463 -2.0967 40 1 2.7163 2.6385 -7.0542 41 1 1.3832 1.5926 -6.4747 42 1 -2.9682 4.1497 -4.9929 43 1 -3.9892 4.1954 -6.4505 44 1 -2.5848 3.1042 -6.3816 45 1 -1.9960 7.3329 -6.6614 46 1 -3.6456 6.6651 -6.6132 47 1 -2.6242 6.6197 -5.1564 48 1 -1.7031 4.1061 -8.4937 49 1 -3.1076 5.1971 -8.5623 50 1 -1.4583 5.8653 -8.6098 51 1 1.3993 5.2985 -4.7082 52 1 2.7269 5.0806 -5.8900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255151521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:23 Heat of formation + Delta-G solvation = -63.606122 kcal Electronic energy + Delta-G solvation = -28627.375551 eV Core-core repulsion = 24820.337316 eV Total energy + Delta-G solvation = -3807.038235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.00658 -40.70140 -38.21650 -37.71224 -35.52827 -34.83222 -33.80364 -32.31023 -29.57502 -29.13991 -28.36574 -28.28811 -27.50190 -25.38003 -24.68400 -22.97512 -21.43448 -21.05608 -20.85286 -20.25151 -18.97661 -18.39936 -17.61494 -17.50888 -16.91078 -16.41311 -16.01933 -15.90579 -15.46826 -15.32516 -15.07283 -14.96338 -14.49491 -14.39878 -14.28200 -13.94778 -13.77545 -13.37040 -13.35089 -13.27897 -13.12456 -12.88495 -12.85778 -12.84473 -12.73047 -12.52960 -12.45914 -12.44480 -12.35888 -12.23178 -11.95257 -11.60444 -11.39915 -11.33059 -11.13154 -10.88257 -10.70008 -10.63847 -10.51936 -9.91712 -8.97498 -8.09069 -6.21039 1.01482 1.42739 1.44265 1.51258 1.72557 2.42744 2.58134 2.84302 3.18019 3.20909 3.70079 3.75398 3.79783 3.84058 3.94732 4.01309 4.09142 4.41427 4.45174 4.47485 4.54004 4.60961 4.61479 4.61979 4.71173 4.75897 4.76470 4.78798 4.79702 4.83910 4.86253 4.87826 4.90184 4.94064 4.97765 5.11700 5.27283 5.27934 5.28837 5.34118 5.35370 5.43278 5.45960 5.56306 5.71910 5.80585 5.90284 6.27983 6.41400 6.51965 6.82752 7.05019 7.22163 7.47765 8.96013 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.002795 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.079357 B =10015.469260 C =10879.873672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.224 3.776 4 H -0.033 1.033 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.953 3.047 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.683 5.683 14 C 0.100 3.900 15 C -0.115 4.115 16 H 0.079 0.921 17 C -0.163 4.163 18 H 0.147 0.853 19 C 0.153 3.847 20 N -0.616 5.616 21 C 0.670 3.330 22 O -0.594 6.594 23 O -0.367 6.367 24 C 0.124 3.876 25 C -0.181 4.181 26 C -0.135 4.135 27 C -0.176 4.176 28 C 0.135 3.865 29 C -0.163 4.163 30 H 0.141 0.859 31 H 0.031 0.969 32 H 0.049 0.951 33 H 0.033 0.967 34 H 0.020 0.980 35 H 0.057 0.943 36 H 0.261 0.739 37 H 0.332 0.668 38 H 0.058 0.942 39 H 0.024 0.976 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.092 0.908 50 H 0.065 0.935 51 H 0.082 0.918 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 10.865 -21.225 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C 0.116 3.884 4 H -0.016 1.016 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.779 3.221 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.314 5.314 14 C -0.029 4.029 15 C -0.133 4.133 16 H 0.097 0.903 17 C -0.182 4.182 18 H 0.165 0.835 19 C 0.032 3.968 20 N -0.357 5.357 21 C 0.426 3.574 22 O -0.485 6.485 23 O -0.282 6.282 24 C 0.088 3.912 25 C -0.239 4.239 26 C -0.192 4.192 27 C -0.233 4.233 28 C 0.013 3.987 29 C -0.181 4.181 30 H 0.158 0.842 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.149 0.851 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.129 0.871 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.122 0.878 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.110 0.890 50 H 0.084 0.916 51 H 0.100 0.900 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.153 10.055 -21.527 24.120 hybrid contribution 0.513 0.437 1.450 1.599 sum -3.640 10.493 -20.076 22.943 Atomic orbital electron populations 1.21290 0.96298 0.98306 1.00460 1.21311 0.96066 0.97923 0.98348 1.18873 0.91066 0.92090 0.86380 1.01575 1.21427 1.31504 1.12026 0.91398 0.92568 1.25608 0.95340 0.95701 1.01480 1.70011 1.38368 1.24291 1.22921 0.85692 0.78825 0.78835 0.78777 1.19878 1.21176 1.19584 1.60526 1.48300 1.15961 1.06595 1.21316 0.92845 0.99266 0.89495 1.22058 0.97790 1.01131 0.92370 0.90251 1.23709 1.02993 1.00921 0.90611 0.83531 1.21936 0.92155 0.86289 0.96404 1.47585 1.10554 1.21407 1.56146 1.17519 0.80752 0.81048 0.78122 1.90883 1.65734 1.46662 1.45258 1.86314 1.31518 1.36513 1.73813 1.22432 0.76189 0.97872 0.94688 1.22485 1.01017 0.99358 1.01001 1.21884 1.02281 0.92394 1.02662 1.22446 1.04275 1.03184 0.93401 1.22043 0.93118 0.91646 0.91853 1.23838 1.02709 0.90152 1.01445 0.84158 0.95012 0.93159 0.94820 0.96152 0.92434 0.93011 0.85117 0.92314 0.95750 0.87098 0.90866 0.92784 0.88819 0.92189 0.90801 0.87791 0.91796 0.92051 0.88964 0.91596 0.90001 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.86 9.46 71.98 0.68 -4.18 16 2 C -0.10 -4.83 5.58 30.59 0.17 -4.66 16 3 C 0.22 11.23 2.30 44.17 0.10 11.33 16 4 H -0.03 -1.85 7.84 -2.38 -0.02 -1.87 16 5 C -0.53 -28.27 7.34 25.60 0.19 -28.08 16 6 H 0.06 2.98 7.60 -2.91 -0.02 2.96 16 7 C 0.02 0.98 5.30 84.65 0.45 1.43 16 8 N -0.92 -52.42 11.34 21.45 0.24 -52.17 16 9 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 13 N -0.68 -28.52 5.51 -495.44 -2.73 -31.25 16 14 C 0.10 3.43 5.73 86.30 0.49 3.93 16 15 C -0.11 -3.20 5.34 -10.80 -0.06 -3.25 16 16 H 0.08 2.68 8.00 -2.39 -0.02 2.66 16 17 C -0.16 -3.34 6.90 -9.89 -0.07 -3.40 16 18 H 0.15 2.51 8.14 -2.39 -0.02 2.49 16 19 C 0.15 3.07 6.95 86.53 0.60 3.68 16 20 N -0.62 -14.50 2.90 -938.24 -2.72 -17.22 16 21 C 0.67 18.76 8.01 129.79 1.04 19.80 16 22 O -0.59 -19.21 12.15 19.82 0.24 -18.97 16 23 O -0.37 -9.31 9.41 -55.42 -0.52 -9.83 16 24 C 0.12 2.53 1.13 -10.79 -0.01 2.52 16 25 C -0.18 -3.99 8.37 71.98 0.60 -3.39 16 26 C -0.14 -1.89 8.85 71.98 0.64 -1.26 16 27 C -0.18 -3.23 8.37 71.98 0.60 -2.63 16 28 C 0.14 2.53 6.97 86.54 0.60 3.13 16 29 C -0.16 -3.32 6.79 -9.88 -0.07 -3.39 16 30 H 0.14 2.53 8.12 -2.39 -0.02 2.51 16 31 H 0.03 1.55 7.37 -2.38 -0.02 1.53 16 32 H 0.05 2.24 7.50 -2.39 -0.02 2.22 16 33 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.02 0.92 7.43 -2.39 -0.02 0.91 16 35 H 0.06 3.17 6.13 -2.39 -0.01 3.15 16 36 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 37 H 0.33 13.68 8.25 -89.70 -0.74 12.94 16 38 H 0.06 2.11 7.40 -2.39 -0.02 2.10 16 39 H 0.02 0.82 7.94 -2.38 -0.02 0.80 16 40 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.71 7.88 -2.39 -0.02 1.69 16 42 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 44 H 0.06 1.68 5.88 -2.38 -0.01 1.66 16 45 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 46 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.06 1.48 5.88 -2.38 -0.01 1.47 16 49 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.08 1.64 7.87 -2.38 -0.02 1.62 16 52 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -65.50 404.53 2.65 -62.84 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.15 Total: 29.74 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 5.97 Total: -8.42 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -5.21 Total: -100.64 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.28 Total: -28.80 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.50 2.65 -62.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.764 kcal (2) G-P(sol) polarization free energy of solvation -65.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds