Wall clock time and date at job start Tue Mar 31 2020 15:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47306 * 2 1 4 4 H 1.09000 * 109.47542 * 185.20599 * 3 2 1 5 5 C 1.50694 * 109.47486 * 305.20713 * 3 2 1 6 6 H 1.08008 * 120.00264 * 119.99297 * 5 3 2 7 7 C 1.37876 * 120.00193 * 300.27587 * 5 3 2 8 8 N 1.31518 * 120.00522 * 179.72459 * 7 5 3 9 9 Si 1.86801 * 119.99777 * 359.71925 * 7 5 3 10 10 H 1.48504 * 109.47294 * 89.99988 * 9 7 5 11 11 H 1.48498 * 109.47191 * 210.00355 * 9 7 5 12 12 H 1.48504 * 109.46950 * 330.00451 * 9 7 5 13 13 N 1.46905 * 109.46901 * 65.20525 * 3 2 1 14 14 C 1.46903 * 110.99812 * 86.56025 * 13 3 2 15 15 H 1.08999 * 110.44549 * 321.20360 * 14 13 3 16 16 C 1.54668 * 110.49379 * 83.77167 * 14 13 3 17 17 C 1.55921 * 104.47931 * 119.57515 * 16 14 13 18 18 H 1.09003 * 115.73658 * 159.85564 * 17 16 14 19 19 C 1.56903 * 100.76891 * 33.90553 * 17 16 14 20 20 C 1.56076 * 110.49971 * 198.62719 * 14 13 3 21 21 H 1.09000 * 116.36570 * 78.04173 * 20 14 13 22 22 C 1.59067 * 103.24092 * 308.23616 * 20 14 13 23 23 N 1.47786 * 105.01680 * 289.18153 * 22 20 14 24 24 C 1.34779 * 126.65726 * 181.27730 * 23 22 20 25 25 O 1.21514 * 119.99545 * 179.97438 * 24 23 22 26 26 O 1.34633 * 120.00227 * 359.97438 * 24 23 22 27 27 C 1.45195 * 117.00020 * 180.02562 * 26 24 23 28 28 C 1.53001 * 109.47359 * 59.99751 * 27 26 24 29 29 C 1.53001 * 109.47054 * 179.97438 * 27 26 24 30 30 C 1.52997 * 109.47151 * 299.99565 * 27 26 24 31 31 H 1.09004 * 109.46823 * 303.09818 * 1 2 3 32 32 H 1.09003 * 109.47545 * 63.09817 * 1 2 3 33 33 H 1.09004 * 109.47254 * 183.09959 * 1 2 3 34 34 H 1.09010 * 109.46820 * 240.00503 * 2 1 3 35 35 H 1.08992 * 109.47594 * 120.00677 * 2 1 3 36 36 H 0.96996 * 119.99803 * 180.02562 * 8 7 5 37 37 H 1.00903 * 110.99687 * 322.60834 * 13 3 2 38 38 H 1.08997 * 110.43213 * 238.31857 * 16 14 13 39 39 H 1.08994 * 110.43442 * 0.82688 * 16 14 13 40 40 H 1.09000 * 112.19868 * 62.12455 * 19 17 16 41 41 H 1.09005 * 112.19980 * 189.10568 * 19 17 16 42 42 H 1.08998 * 110.09324 * 170.47069 * 22 20 14 43 43 H 1.09000 * 110.70731 * 48.20226 * 22 20 14 44 44 H 1.09001 * 109.46976 * 59.99735 * 28 27 26 45 45 H 1.08998 * 109.47268 * 180.02562 * 28 27 26 46 46 H 1.09001 * 109.46918 * 300.00032 * 28 27 26 47 47 H 1.09001 * 109.47036 * 59.99617 * 29 27 26 48 48 H 1.08998 * 109.47098 * 179.97438 * 29 27 26 49 49 H 1.09000 * 109.47686 * 299.99992 * 29 27 26 50 50 H 1.09001 * 109.47031 * 60.00026 * 30 27 26 51 51 H 1.08998 * 109.47197 * 180.02562 * 30 27 26 52 52 H 1.09001 * 109.46780 * 300.00286 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0932 5 6 1.4352 2.1892 -1.1608 6 1 0.8261 3.0631 -0.9825 7 6 1.6546 1.7534 -2.4504 8 7 1.1223 2.4019 -3.4633 9 14 2.7080 0.2420 -2.7590 10 1 1.8481 -0.9688 -2.7608 11 1 3.3847 0.3704 -4.0745 12 1 3.7285 0.1226 -1.6868 13 7 1.6556 2.0977 1.2574 14 6 2.6528 1.8489 2.3070 15 1 3.0240 0.8260 2.2447 16 6 3.8207 2.8566 2.1941 17 6 3.8096 3.6201 3.5536 18 1 4.7377 4.1259 3.8200 19 6 3.3437 2.4804 4.5261 20 6 2.0427 2.1241 3.7169 21 1 1.3927 1.3490 4.1228 22 6 1.4280 3.5838 3.5693 23 7 2.5964 4.4852 3.4907 24 6 2.5707 5.8285 3.3834 25 8 3.6112 6.4536 3.3280 26 8 1.3921 6.4777 3.3376 27 6 1.4404 7.9242 3.2211 28 6 2.1715 8.3080 1.9331 29 6 0.0156 8.4806 3.1834 30 6 2.1847 8.5081 4.4235 31 1 -0.3633 0.5612 0.8610 32 1 -0.3634 0.4650 -0.9164 33 1 -0.3634 -1.0262 0.0556 34 1 1.8932 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8898 36 1 1.2764 2.0951 -4.3704 37 1 0.7375 1.8017 1.5534 38 1 4.7659 2.3304 2.0610 39 1 3.6490 3.5472 1.3685 40 1 4.0489 1.6497 4.5549 41 1 3.1182 2.8569 5.5238 42 1 0.8225 3.8252 4.4429 43 1 0.8301 3.6601 2.6611 44 1 1.6412 7.8920 1.0764 45 1 2.2081 9.3939 1.8459 46 1 3.1865 7.9116 1.9595 47 1 -0.5056 8.2071 4.1008 48 1 0.0519 9.5665 3.0964 49 1 -0.5145 8.0646 2.3266 50 1 3.1997 8.1116 4.4499 51 1 2.2206 9.5940 4.3363 52 1 1.6638 8.2346 5.3410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255151910.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:57 Heat of formation + Delta-G solvation = -51.952099 kcal Electronic energy + Delta-G solvation = -30070.811717 eV Core-core repulsion = 26264.278838 eV Total energy + Delta-G solvation = -3806.532879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.87806 -39.73884 -36.81917 -36.13928 -34.03779 -32.75940 -31.76567 -30.49396 -29.44318 -27.39292 -27.29251 -27.25503 -25.74605 -24.43677 -23.21057 -22.14735 -20.45673 -19.91157 -19.42206 -18.38725 -17.61350 -16.67080 -16.36153 -16.06717 -15.61081 -15.41272 -15.03346 -14.48693 -14.21598 -13.97521 -13.68168 -13.54248 -13.22083 -13.03746 -12.61512 -12.53135 -12.46841 -12.31627 -12.19286 -11.85423 -11.78323 -11.73435 -11.62765 -11.43178 -11.28928 -11.19688 -11.14697 -10.98399 -10.90787 -10.70848 -10.49153 -10.43185 -10.22793 -10.16333 -9.86156 -9.78561 -9.36875 -9.10706 -8.52632 -8.38479 -7.42632 -6.02902 -3.98427 2.27278 3.11899 3.25408 3.34757 3.38089 4.01887 4.39869 4.41432 4.53870 4.64849 4.77393 4.81742 4.95765 5.04899 5.13073 5.27559 5.27858 5.45779 5.46930 5.56674 5.60476 5.64240 5.67911 5.71713 5.78789 5.82489 5.84558 5.90460 5.93239 5.94850 5.95351 6.01100 6.07090 6.15328 6.21088 6.30018 6.31935 6.41309 6.46717 6.52458 6.62536 6.69394 6.79787 6.85770 6.99881 7.22655 7.74466 7.78681 7.92714 8.31911 8.59244 8.71255 9.09129 9.60274 11.10659 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.004029 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.209809 B = 6948.734299 C = 7952.318787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.158 4.158 3 C 0.187 3.813 4 H 0.032 0.968 5 C -0.487 4.487 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.271 1.271 13 N -0.661 5.661 14 C 0.083 3.917 15 H 0.042 0.958 16 C -0.129 4.129 17 C 0.150 3.850 18 H 0.115 0.885 19 C -0.134 4.134 20 C -0.114 4.114 21 H 0.114 0.886 22 C 0.116 3.884 23 N -0.594 5.594 24 C 0.673 3.327 25 O -0.579 6.579 26 O -0.359 6.359 27 C 0.137 3.863 28 C -0.184 4.184 29 C -0.140 4.140 30 C -0.181 4.181 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.048 0.952 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.331 0.669 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.087 0.913 51 H 0.067 0.933 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 4.142 18.003 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.197 4.197 3 C 0.078 3.922 4 H 0.050 0.950 5 C -0.525 4.525 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.540 5.540 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.293 5.293 14 C -0.028 4.028 15 H 0.060 0.940 16 C -0.168 4.168 17 C 0.048 3.952 18 H 0.133 0.867 19 C -0.173 4.173 20 C -0.133 4.133 21 H 0.132 0.868 22 C -0.007 4.007 23 N -0.335 5.335 24 C 0.428 3.572 25 O -0.470 6.470 26 O -0.274 6.274 27 C 0.100 3.900 28 C -0.241 4.241 29 C -0.197 4.197 30 C -0.238 4.238 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.151 0.849 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.106 0.894 51 H 0.086 0.914 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.312 5.152 17.568 18.355 hybrid contribution 0.378 -1.853 -0.272 1.910 sum 1.690 3.299 17.295 17.688 Atomic orbital electron populations 1.21592 0.95759 0.98725 1.02981 1.22495 0.97235 1.01127 0.98845 1.19691 0.95902 0.88077 0.88560 0.95009 1.20877 1.31065 1.12525 0.88067 0.90151 1.24888 0.95531 0.96550 0.96227 1.69881 1.45028 1.40290 0.98828 0.86988 0.81171 0.83952 0.76814 1.20737 1.22548 1.19627 1.60839 1.03574 1.62183 1.02675 1.22593 0.93627 0.96419 0.90185 0.94013 1.23127 0.97674 0.98570 0.97407 1.23550 0.87772 0.87944 0.95938 0.86687 1.23835 0.97542 0.98085 0.97816 1.24625 0.96742 0.96048 0.95907 0.86845 1.22980 0.87703 0.87627 1.02349 1.47622 1.09553 1.01649 1.74646 1.17436 0.82186 0.81538 0.76016 1.90857 1.33240 1.65666 1.57195 1.86325 1.31980 1.22806 1.86276 1.21997 0.96815 0.75014 0.96202 1.22511 1.03369 1.01879 0.96345 1.21846 0.93855 1.00660 1.03376 1.22507 1.03100 1.01328 0.96904 0.93752 0.90572 0.95281 0.93416 0.94963 0.92796 0.84884 0.91413 0.89130 0.89457 0.90666 0.92521 0.88437 0.91714 0.91539 0.89393 0.91753 0.90411 0.91188 0.89439 0.91437 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.39 37.15 0.35 -2.19 16 2 C -0.16 -3.21 5.21 -26.74 -0.14 -3.35 16 3 C 0.19 4.13 1.78 -68.87 -0.12 4.01 16 4 H 0.03 0.76 6.69 -51.93 -0.35 0.41 16 5 C -0.49 -13.12 7.99 -34.44 -0.28 -13.39 16 6 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 7 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 8 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 9 Si 0.88 21.66 24.32 -169.99 -4.13 17.53 16 10 H -0.28 -6.73 6.91 56.52 0.39 -6.34 16 11 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 13 N -0.66 -12.19 4.53 -98.32 -0.45 -12.64 16 14 C 0.08 1.24 2.68 -65.19 -0.17 1.06 16 15 H 0.04 0.63 7.31 -51.93 -0.38 0.26 16 16 C -0.13 -1.99 5.82 -24.29 -0.14 -2.13 16 17 C 0.15 2.00 5.03 -62.80 -0.32 1.69 16 18 H 0.12 1.50 8.04 -51.93 -0.42 1.08 16 19 C -0.13 -1.40 6.63 -22.28 -0.15 -1.54 16 20 C -0.11 -1.33 5.09 -83.26 -0.42 -1.75 16 21 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 22 C 0.12 1.57 6.25 0.04 0.00 1.57 16 23 N -0.59 -9.01 2.94 -160.81 -0.47 -9.48 16 24 C 0.67 11.37 7.97 54.06 0.43 11.80 16 25 O -0.58 -10.61 12.20 -19.28 -0.24 -10.84 16 26 O -0.36 -5.69 9.55 -40.31 -0.38 -6.07 16 27 C 0.14 1.80 1.13 -90.62 -0.10 1.69 16 28 C -0.18 -2.53 8.37 37.16 0.31 -2.22 16 29 C -0.14 -1.45 8.85 37.16 0.33 -1.12 16 30 C -0.18 -2.14 8.37 37.16 0.31 -1.83 16 31 H 0.04 0.75 6.33 -51.93 -0.33 0.42 16 32 H 0.08 1.69 7.15 -51.93 -0.37 1.31 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 1.06 3.40 -51.92 -0.18 0.88 16 35 H 0.03 0.57 7.49 -51.93 -0.39 0.19 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.33 5.73 5.97 -39.29 -0.23 5.49 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.77 7.96 -51.93 -0.41 1.35 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 1.55 6.58 -51.93 -0.34 1.21 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.42 5.88 -51.93 -0.31 1.12 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.09 1.23 5.88 -51.93 -0.31 0.93 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -31.05 384.90 -8.41 -39.47 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -9.11 Total: 8.57 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -0.21 Total: -5.86 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.14 Total: -48.58 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.62 Total: -16.92 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.13 Total: 17.53 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.05 -8.41 -39.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151910.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.487 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds